Gene identification with sequenced T-DNA tags generated by transformation of Arabidopsis cell suspension

Plant Journal

Volumn 13, Issue 5, 1998, Pages 707-716

  Mathur, Jaideep ^a   Szabados, László ^b   Schaefer, Sabine ^a   Grunenberg, Britta ^a   Lossow, Andrea ^a   Jonas Straube, Esther ^a   Schell, Jeff ^a   Koncz, Csaba ^a,b   Koncz Kálmán, Zsuzsanna ^a  

^a MAX PLANCK INSTITUTE FOR PLANT BREEDING RESEARCH   (Germany)

^b INSTITUTE OF EXPERIMENTAL MEDICINE   (Hungary)

Author keywords

[No Author keywords available]

Indexed keywords

AGROBACTERIUM; CHROMOSOME ISOLATION; GENE SEQUENCING; GENETIC TRANSFORMATION; GENOME ANALYSIS; INSERTIONAL MUTAGENESIS; POLYMERASE CHAIN REACTION; SEQUENCE TAGGED SITE;

ARABIDOPSIS; BASE SEQUENCE; DNA PRIMERS; DNA, BACTERIAL; DNA, PLANT; GENES, PLANT; GENETIC VECTORS; GENOME, PLANT; MUTAGENESIS, INSERTIONAL; PLANTS, GENETICALLY MODIFIED; POLYMERASE CHAIN REACTION; RHIZOBIUM; SEQUENCE TAGGED SITES; TRANSFORMATION, GENETIC;

AGROBACTERIUM; ARABIDOPSIS; EMBRYOPHYTA; ZEA MAYS;

EID: 0032033426     PISSN: 09607412     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-313X.1998.00059.x     Document Type: Article

References (51)

1. An, G. (1985) High efficiency transformation of cultured tobacco cells. Plant Physiol. 79, 568-570.
2. Ballinger, D.G. and Benzer, S. (1989) Targeted gene mutations in Drosophila, Proc. Natl Acad. Sci, USA, 86, 9402-9406.
3. Bancroft, I., Jones, J.D. and Dean, C. (1993) Heterologous transposon tagging of the DRL 1 locus in Arabidopsis. Plant Cell, 5, 631-638.
4. Bechtold, N., Ellis, J. and Pelletier, G. (1993) In planta Agrobacterium mediated gene transfer by infiltration of adult Arabidopsis thaliana plants. C. R. Acad. Sci. [III], 316, 1194-1199.
5. Cardon, G., Frey. M., Saedler, H. and Gierl, A. (1993) Mobility of the maize transposable element En/Spm in Arabidopsis thaliana. Plant J. 3, 773-784.
6. Cooke, R., Raynal, M., Laudié, M. et al. (1996) Further progress towards a catalogue of all Arabidopsis genes: analysis of a set of 5000 non-redundant ESTs. Plant J. 9, 101-124.
7. Damm, B.R., Schmidt, R. and Willmitzer, L. (1989) Efficient transformation of Arabidopsis thaliana using direct gene transfer to protoplasts. Mol. Gen. Genet. 217, 6-12.
8. Dellaporta, S.L., Wood, J. and Hicks, J.B. (1983) A plant DNA minipreparation: version II. Plant Mol. Biol. Rep. 1, 19-21.
9. Feldmann, K.A., Malmberg, R. and Dean, C. (1994) Mutagenesis in Arabidopsis. In Arabidopsis (Meyerowitz, E.M. and Somerville, C.R., eds). Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press, pp. 137-172.
10. Forsthoefel, N.R., Wu, Y., Schulz, B., Bennett, M.J. and Feldmann, K.A. (1992) T-DNA insertion mutagenesis in Arabidopsis: prospects and perspectives. Aust. J. Plant Physiol. 19, 353-366.
11. Franzmann, L.H., Yoon, E.S. and Meinke, D.W. (1995) Saturating the genetic map of Arabidopsis thaliana with embryonic mutations. Plant J. 7, 341-350.
12. Gamborg, O.L, Miller, R.A. and Ojima, K. (1968) Nutrient requirements of suspension cultures of soybean root cells. Exp. Cell Res. 50, 151-158.
13. Hayashi, H., Czaja, l., Schell, J. and Walden, R. (1992) Activation of plant gene by T-DNA tagging: auxin independent growth in vitro. Science, 258, 1350-1353.
14. Hiei, Y., Ohta, S., Komari, T. and Kumashiro, T. (1994) Efficient transformation of rice (Oryza sativa L.) mediated by Agrobacterium and sequence analysis of the boundaries of the T-DNA. Plant J. 6, 271-282.
15. Höfte, H., Desprez, T., Amselem, J. et al. (1993) An inventory of 1152 expressed sequence tags obtained by partial sequencing of cDNAs from Arabidopsis thaliana. Plant J. 4, 1051-1061.
16. Horsch, R.B., Fraley, R., Rogers, S., Fry, J., Klee, H., Shah, D., McCormick, S., Niedermeyer, J. and Hoffmann, N. (1987) Agrobacterium-mediated transformation of plants. In Plant Tissue and Cell Culture (Green, C.E., Sommers, D.A., Hackett, W.P. and Biersboer, D.D., eds). New York: Alan Liss Inc., pp. 317-329.
17. Huang, G.M. and Miao, G.-H. (1997) The dawn of the post-genome era, seen from the ocean front. Trends Biotechnol. 15, 200-202.
18. Jefferson, R.A. (1987) Assaying chimeric genes in plants: the GUS gene fusion system. Plant Mol. Biol. Rep. 5, 387-405.
19. Kaiser, K. and Goodwin, S.F. (1990) 'Site-selected' transposon mutagenesis of Drosophila. Proc. Natl Acad. Sci. USA, 87, 1686-1690.
20. Kakimoto, T. (1996) CKI1, a histidine kinase homolog implicated in cytokinin signal transduction. Science, 274, 982-985.
21. Kertbundit, S., De Greve, H., Deboeck, F., Van Montagu, M. and Hernalsteens, J. (1991) In vivo random β-glucoronidase gene fusions in Arabidopsis thaliana. Proc. Natl Acad. Sci. USA, 88, 5212-5216.
22. Knapp, S., Larondelle, Y., Rossberg, M., Furtek, D. and Theres, K. (1994) Transgenic tomato lines coritaining Ds elements at defined genomic positions as tools for targeted transposon tagging. Mol. Gen. Genet. 243, 666-673.
23. Koes, R., Souer, E., van Houwelingen, A. et al. (1995) Targeted gene inactivation in petunia by PCR-based selection of transposon insertion mutants. Proc. Natl Acad. Sci. USA, 92, 8149-8153.
24. Kohchi, K., Fujishige, K. and Ohyama, K. (1995) Construction of equalized cDNA library from Arabidopsis thaliana. Plant J. 8, 771-776.
25. Koncz, C., Martini, N., Mayerhofer, R., Koncz-Kálmán, Z., Körber, H., Rédei, G.P. and Schell, J. (1989) High-frequency T-DNA-mediated gene tagging in plants. Proc. Natl Acad. Sci. USA, 86, 8467-8471.
26. Koncz, C., Martini, N., Szabados, L., Hrouda, M., Bachmair, A. and Schell, J. (1994) Specialized vectors for gene tagging and expression studies. In Plant Molecular Biology Manual, Volume B2 (Gelvin, S.B. and Schilperoort, R.A., eds). Dordrecht, The Netherlands: Kluwer Academic Press, pp. 1-22.
27. Koncz, C. and Rédei, G.P. (1994) Genetic studies with Arabidopsis: a historical view. In Arabidopsis (Meyerowitz, E.M. and Somerville, C.R., eds). Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press, pp. 223-252.
28. Krysan, P.J., Young, J.C., Tax, F. and Sussman, M.R. (1996) Identification of transferred DNA insertions within Arabidopsis genes involved in signal transduction and ion transport. Proc. Natl Acad. Sci. USA, 93, 8145-8150.
29. Long, D., Martin, M., Sundberg, E., Swimburne, J., Puangsomlee, P. and Coupland, G. (1993) The maize transposable element system Ac/Ds as a mutagen in Arabidopsis: identification of an albino mutation induced by Ds insertion. Proc. Natl Acad. Sci. USA, 90, 10370-10374.
30. Mathur, J., Szabados, L and Kortcz, C. (1995) A simple method for isolation, liquid culture, transformation and regeneration of Arabidopsis thaliana protoplasts. Plant Cell Rep. 14, 221-226.
31. McKinney, E.C., Ali, N., Traut, A., Feldmann, K.A., Belostotsky, D.A., McDowell, J.M. and Meagher, R.B. (1995) Sequence-based identification of T-DNA insertion mutations in Arabidopsis: actin mutants act2-1 and act4-1. Plant J. 8, 613-622.
32. Meyerowitz, E.M. (1994) Structure and organization of the Arabidopsis thaliana nuclear genome. In Arabidopsis (Meyerowitz, E.M. and Somerville, C.R., eds). Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press, pp. 21-36.
33. Miao, Z.-H. and Lam, E. (1995) Targeted disruption of the TGA3 locus in Arabidopsis thaliana. Plant J. 7, 359-365.
34. Miklos, G.L.G. and Rubin, G.M. (1996) The role of the genome project in determining gene function: insights from model organisms. Cell, 86, 521-529.
35. Morris, P.C. and Altmann, T. (1994) Tissue culture and transformation, In Arabidopsis (Meyerowitz, E.M. and Somerville, C.R., eds). Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press, pp. 173-222.
36. Murashige, T. and Skoog, F. (1962) A revised medium for rapid growth and bioassays with tobacco tissue cultures. Physiol. Plant. 15, 473-497.
37. Newman, T., de Bruijn, F.J., Green, P. et al. (1994) Genes galore: a summary of methods for accessing results from large-scale partial sequencing of anonymous Arabidopsis cDNA clones. Plant Physiol. 106, 1241-1255.
38. Osborn, B.I., Corr, C.A., Prince, J.P., Hehl, R., Tanksley, S.D., McCormick, S. and Baker, B. (1991) Ac transposition from a T-DNA can generate linked and unlinked clusters of insertions in the tomato genome. Genetics, 129, 833-844.
39. Rushforth, A.M., Saari, B. and Anderson, P. (1993) Site-selected insertion of the transposon Tc1 into a Caenorhabditis elegans myosin light chain gene. Mol. Cell Biol. 13, 902-910.
40. Sambrook, J., Fritsch, E.F. and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press.
41. Sasaki, T., Song, J., Koga-Ban, Y. et al. (1994) Toward cataloguing all rice genes: large-scale sequencing of randomly chosen rice cDNAs from a callus cDNA library. Plant J. 6, 615-624.
42. Schmidt, R., West, J., Love, K., Lenehan, Z., Lister, C., Thompson, H., Bouchez, D. and Dean, C. (1995) Physical map and organization of Arabidopsis thaliana chromosome 4. Science, 270, 480-483.
43. Souer, E., Quattrocchio, F., de Vetten, N., Mol, J. and Koes, R. (1995) A general method to isolate genes tagged by a high copy number transposable element. Plant J. 7, 677-685.
44. Street, H.E. (1973) Cell (suspension) cultures-techniques. In Plant Tissue and Cell Culture (Street, H.., ed.). Oxford: Blackwell, pp. 59-99.
45. Sunderesan, V., Springer, P., Volpe, T., Hawrd, S., Jones, J.D.G., Dean, C., Ma, H. and Martienssen, R. (1995) Patterns of gene action in plant development revealed by enhancer trap and gene trap transposable element. Genes Devel. 9, 1797-1810.
46. Taylor, B. and Powell, A. (1983) isolation of plant DNA and RNA. BRL Focus, 4, 4-6.
47. Topping, J.F., Wei, W. and Lindsey, K. (1991) Functional tagging of regulatory elements in the plant genome. Development, 112, 1009-1019.
48. Vancanneyt, G., Schmidt, R., O'Connor-Sanchez, A., Willmitzer, L. and Rocha-Sosa, M. (1990) Construction of an intron-containing marker gene: splicing of the intron in transgenic plants and its use in monitoring early events of Agrobacterium-mediated plant transformation. Mol. Gen. Genet. 220, 245-250.
49. Zabarovsky, E.R. and Weinberg, G. (1990) High efficiency electroporation of ligated DNA into bacteria. Nucl. Acids Res., 18, 5912.
50. Zachgo, E.A., Wang, M.L., Dewdney, J., Bouchez, D., Camilleri, C., Belmonte, S., Huang, L., Dolan, M. and Goodman, H.M. (1996) A physical map of chromosome 2 of Arabidopsis thaliana. Genome Res. 6, 19-25.
51. Zwaal, R.R., Broeks, A., van Meurs, J., Groenen, J.T.M. and Plasterk, R.H.A. (1993) Target-selected gene inactivation in Caenorhabditis elegans using a frozen transposon insertion mutant bank. Proc. Natl Acad. Sci. USA, 90, 7431-7435.