A binary-BAC system for plant transformation with high-molecular-weight DNA

Gene

Volumn 200, Issue 1-2, 1997, Pages 107-116

  Hamilton, Carol M ^a  

^a Department of Obstetrics Gynecology   (United States)

Author keywords

Agrobacterium; Bacterial artificial chromosome; BIBAC; Binary vector; Virulence genes

Indexed keywords

DNA FRAGMENT;

ARTICLE; BACTERIAL VIRULENCE; CELL NUCLEUS; CLONING VECTOR; ESCHERICHIA COLI; GENE TRANSFER; GENETIC TRANSFORMATION; HUMAN; MOLECULAR WEIGHT; NONHUMAN; PLANT CELL; PLASMID; PRIORITY JOURNAL; RECOMBINANT DNA TECHNOLOGY; RHIZOBIUM; RHIZOBIUM RADIOBACTER; TECHNIQUE; YEAST;

BACTERIAL PROTEINS; CHROMOSOMES, BACTERIAL; DNA REPLICATION; DNA, BACTERIAL; DNA-BINDING PROTEINS; ESCHERICHIA COLI; GENE LIBRARY; GENE TRANSFER TECHNIQUES; GENES, BACTERIAL; GENETIC VECTORS; GENOME, HUMAN; HUMANS; MOLECULAR WEIGHT; PLANTS; PLANTS, GENETICALLY MODIFIED; PLASMIDS; RHIZOBIUM; TRANSCRIPTION FACTORS; VIRULENCE; VIRULENCE FACTORS;

EID: 0030731043     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1119(97)00388-0     Document Type: Article

References (60)

1. Abremski, K., Hoess, R., Sternberg, R., 1983. Studies of the properties of P1 site-specific recombinationevidence for topologically unlinked products following recombination. Cell 32, 1310-1311.
2. Ausubel, F.M., Brent, R., Kingston, R.E., Moore, D.D., Seidman, J.G., Smith, J.A., Struhl, K., 1995. Current Protocols in Molecular Biology. Wiley, New York, NY.
3. Becker, D., Kemper, E., Schell, J., Masterson, R., 1992. New plant binary vectors with selectable markers located proximal to the left T-DNA border. Plant Mol. Biol. 20, 1195-1197.
4. Chen, C.-Y., Wang, L., Winans, S.C., 1991. Characterization of the supervirulent virG gene of the Agrobacterium tumefaciens plasmid pTiBo542. Mol. Gen. Genet. 230, 302-309.
5. Choi, S., Creelman, R.A., Mullet, J.E., Wing, R.A., 1995. Construction and characterization of a bacterial artificial chromosome library of Arabidopsis thaliana. Plant Mol. Biol. Rep. 13, 124-128.
6. Church, G.M., Gilbert, W., 1984. Genomic sequencing. Proc. Natl. Acad. Sci. USA 81, 1991-1995.
7. Constantino, P., Hooykaas, P.J.J., Dendulk-Ras, H., Schilperoot, R.A., 1980. Tumor formation and rhizogenicity of Agrobacterium rhizogenes carrying Ti plasmids. Gene 11, 79-87.
8. Dedonder, R., 1966. Levansucrase from Bacillus subtilis. Methods Enzymol. 8, 500-505.
9. Ditta, G., Stanfield, S., Corbin, D., Helinski, D.R., 1980. Broad host range DNA cloning system for gram-negative bacteria: Construction of a gene bank of Rhizobium meliloti. Proc. Natl. Acad. Sci. USA 77, 7347-7351.
10. Farrand, S.K., Morchoe, S.P., McCutchan, J., 1989. Construction of an Agrobacterium tumefaciens C58 recA mutant. J. Bacteriol. 171, 5314-5321.
11. Feinberg, A.P., Vogelstein, B., 1983. A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity. Anal. Biochem. 132, 6-13.
12. Fulton, T.M., Chunwongse, J., Tanksley, S.D., 1995. Microprep protocol for extraction of DNA from tomato and other herbaceous plants. Plant Mol. Biol. Rep. 13, 207-209.
13. Gay, P., Le Coq, D., Steinmetz, M., Ferrari, E., Hoch, J.A., 1983. Cloning structural genesacB, which codes for exoenzyme levansucrase of Bacillus subtilis: Expression of the gene in Escherichia coli. J. Bacteriol. 153, 1424-1431.
14. Gay, P., Le Coq, D., Steinmetz, T., Berkelman, T., Kado, C., 1985. Positive selection procedure for entrapment of insertion sequence elements in gram-negative bacteria. J. Bacteriol. 164, 918-921.
15. Gruber, M.Y., Crosby, W.L., 1993. Vectors for plant transformation. In: Glick, B.R., Thompson, J.E. (Eds.), Methods in Plant Molecular Biology and Biotechnology. CRC Press, Boca Raton, FL, pp. 89-119.
16. Gruenbaum, Y., Naveh-Many, T., Cedar, H., Razin, A., 1981. Sequence specificity of methylation in higher plant DNA. Nature 292, 861-862.
17. Hamilton, C.M., Frary, A., Lewis, C., Tanksley, S.D., 1996. Stable transfer of intact high molecular weight DNA into plant chromosomes. Proc. Natl. Acad. Sci. USA 93, 9975-9979.
18. Hengen, P.N., Iyer, V.N., 1992. DNA cassettes containing the origin of transfer (oriT) of two broad-host-range transfer systems. BioTechnology 13, 56-62.
19. Hiei, Y., Ohta, S., Komari, T., Kumashiro, T., 1994. Efficient transformation of rice (Oryza sativa L.) mediated by Agrobacterium and sequence analysis of the boundaries of the T-DNA. Plant J. 6, 271-282.
20. Hoekema, A., Hirsch, P.R., Hooykaas, P.J.J., Schilperoort, R.A., 1983. A binary plant vector strategy based on separation of vir-and T-region of the Agrobacterium tumefaciens Ti plasmid. Nature 303, 179-180.
21. Hood, E.E., Gelvin, S.B., Melchers, L.S., Hoekema, A., 1993. New Agrobacterium helper plasmids for gene transfer to plants. Transgen. Res. 2, 208-218.
22. Hooykaas, P.J.J., Mozo, T., 1994. Agrobacterium molecular genetics. In: Gelvin, S.B., Schilperoort, R.A. (Eds.), Plant Molecular Biology Manual. Kluwer Academic, Boston, MA, pp. B3 1-9 (N).
23. Horsch, R.B., Fry, J.E., Hoffman, N., Eichholtz, D., Rogers, S.G., Fraley, R.T., 1985. A simple and general method for transferring genes into plants. Science 227, 1229-1231.
24. Ioannou, P.A., Amemiya, C.T., Garnes, J., Kroisel, P.M., Shizuya, H., Chen, C., Batzer, M.A., De Jong, P.J., 1994. A new bacteriophage P1-derived vector for the propagation of large human DNA fragments. Nature Genet. 6, 84-89.
25. Ish-Horowicz, D., Burke, J.F., 1981. Rapid and efficient cosmid cloning. Nucleic Acids Res. 9, 2989-2998.
26. Ishida, Y., Saito, H., Ohta, S., Komari, T., Kumashiro, T., 1996. High efficiency transformation of maize (Zea mays L.) mediated by Agrobacterium tumefaciens. Nature Biotechnol. 14, 745-750.
27. Jones, J.D.G., Shlumukov, L., Carland, F., English, J., Scofield, S.R., Bishop, G.J., Harrison, K., 1992. Effective vectors for transformation, expression of heterologous genes, and assaying transposon excision in transgenic plants. Transgen. Res. 1, 285-297.
28. Jouanin, L., Vilaine, F.d'E., Casse-Delbart, F., 1985. Localization and restriction maps of the replication origin regions of the plasmids of Agrobacterium rhizogenes strain A4. Mol. Gen. Genet. 201, 370-374.
29. Kanazin, V., Marek, L.F., Shoemaker, R.C., 1996. Resistance gene analogs are conserved and clustered in soybean. Proc. Natl. Acad. Sci. USA 93, 11746-11750.
30. Kim, U.-J., Birren, B.W., Slepak, T., Mancino, V., Boysen, C., Kang, H.-L., Simon, M.I., Shizuya, H., 1996. Construction and characterization of a human bacterial artificial chromosome library. Genomics 34, 213-218.
31. Knauf, V.C., Nester, E.W., 1982. Wide host range cloning vectorsa cosmid clone bank of an Agrobacterium Ti plasmid. Plasmid 8, 45-54.
32. Kohara, Y., Akiyama, K., Isono, K., 1987. The physical map of the whole E. coli chromosomeapplication of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50, 495-508.
33. Koncz, C., Schell, J., 1986. The promoter of TL-DNA gene 5 controls the tissue-specific expression of chimaeric genes carried by a novel type of Agrobacterium binary vector. Mol. Gen. Genet. 204, 383-396.
34. Lin-Chao, S., Chen, W.-T., Wong, T.-T., 1992. High copy number of the pUC plasmid results from a Rom/Rop-suppressible point mutation in RNAII. Mol. Microbiol. 6, 3385-3393.
35. Liu, C.-N., Li, X.Q., Gelvin, S.B., 1992. Multiple copies of virG enhance the transient transformation of celery, carrot and rice tissues by Agrobacterium tumefaciens. Plant Mol. Biol. 20, 1071
36. Lopilato, J., Bortner, S., Beckwith, J., 1986. Mutations in a new chromosomal gene of Escherichia coli K-12,pcnB, reduce plasmid copy number of pBR322 and its derivatives. Mol. Gen. Genet. 205, 285-290.
37. May, G.D., Afza, R., Mason, H.S., Wiecko, A., Novak, F.J., Arntzen, C.J., 1995. Generation of transgenic banana (Musa acuminata) plants via Agrobacterium-mediated transformation. Bio/Technology 13, 486-492.
38. Mersereau, M., Pazour, G.J., Das, A., 1990. Efficient transformation of Agrobacterium tumefaciens by electroporation. Gene 90, 149-151.
39. Miranda, A., Janssen, G., Hodges, L., Peralta, E.G., Ream, W., 1992. Agrobacterium tumefaciens transfers extremely long T-DNAs by a unidirectional mechanism. J. Bacteriol. 174, 2288-2297.
40. Monaco, A.P., Larin, Z., 1994. YACs, BACs, PACs and MACs: Artificial chromosomes as research tools. Trends Biotech. 12, 280-286.
41. O'Conner, M., Pfeifer, M., Bender, W., 1989. Construction of large DNA segments in Escherichia coli. Science 244, 1307-1312.
42. Ooms, G., Hooykaas, P.J.J., Van Veen, R.J.M., Van Beelen, P., Regensburg-Tuink, A.J.G., Schilperoort, R.A., 1982. Octopine Ti-plasmid deletion mutants of Agrobacterium tumefaciens with emphasis on the right side of the T-region. Plasmid 7, 15-29.
43. Peralta, E.G., Hellmiss, R., Ream, L.W., 1986. Overdrive, a T-DNA transmission enhancer on the A. tumefaciens tumor-inducing plasmid. EMBO J. 5, 1137-1142.
44. Pierce, J.C., Sauer, B., Sternberg, N., 1992. A positive selection vector for cloning high molecular weight DNA by the bacteriophage P1 system: Improved cloning efficacy. Proc. Natl. Acad. Sci. USA 89, 2056-2060.
45. Rackwitz, H.R., Zehetner, G., Murialdo, H., Delius, H., Chai, J.H., Poustka, A., Frischauf, A.-M., Lehrach, H., 1985. Analysis of cosmids using linearization by phage lambda terminase. Gene 40, 259-266.
46. Rossi, L., Hohn, B., Tinland, B., 1996. Integration of complete transferred DNA units is dependent on the activity of virulence E2 protein of Agrobacterium tumefaciens. Proc. Natl. Acad. Sci. USA 93, 126-130.
47. Saiki, R.K., 1988. Optimization of the polymerase chain reaction. In: Erlich, H.A., Gibbs, R., Kazazian, H.H.J. (Eds.), Current Communications in Molecular BiologyPolymerase Chain Reaction. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, pp. 25-30.
48. Shizuya, H., Birren, B., Kim, U.-J., Mancino, V., Slepak, T., Tachiiri, Y., Simon, M., 1992. Cloning and stable maintenance of 300-kilobase-pair fragments of human DNA in Escherichia coli using an F-factor-based vector. Proc. Natl. Acad. Sci. USA 89, 8794-8797.
49. Silhavy, T.J., Berman, M.L., Enquist, L.W. (1984) Experiments in Gene Fusions. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
50. Smith, M.L., Crouse, G.F., 1989. Construction of linker-scanning mutations using a kanamycin-resistance cassette with multiple symmetric restriction sites. Gene 84, 159-164.
51. Sundberg, C., Meek, L., Carroll, K., Das, A., Ream, W., 1996. VirE1 protein mediates export of the single-stranded DNA-binding protein VirE2 from Agrobacterium tumefaciens into plant cells. J. Bacteriol. 178, 1207-1212.
52. Tang, L.B., Lenstra, R., Borchert, T.V., Nagarajan, V., 1990. Isolation and characterization of levansucrase-encoding gene from Bacillus amyloliquefaciens. Gene 96, 89-93.
53. Tanksley, S.D., Ganal, M.W., Martin, G.B., 1995. Chromosome landinga paradigm for map-based gene cloning in plants with large genomes. Trends Genet. 11, 63-68.
54. van Haaren, M.J.J., Sedee, N.J.A., Schilperoort, R.A., Hooykaas, P.J.J., 1987. Overdrive is a T-region transfer enhancer which stimulates T-strand production in A. tumefaciens. Nucleic Acids Res. 15, 8983-8997.
55. Wang, G.-L., Holsten, T.E., Song, W.-Y., Wang, H.-P., Ronald, P.C., 1995. Construction of a rice bacterial artificial chromosome library and identification of clones linked to the Xa-21 disease resistance locus. Plant J. 7, 525-533.
56. White, F.F., Nester, E.W., 1980. Relationship of plasmids responsible for hairy root and crown gall tumorigenicity. J. Bact. 144, 710-720.
57. Winans, S.C., Allenza, P., Stachel, S.E., McBride, K.E., Nester, E.W., 1987. Characterization of the virE operon of the Agrobacterium Ti plasmid pTiA6. Nucleic Acids Res. 15, 825-837.
58. Woo, S.-S., Jiang, J., Gill, B.S., Patterson, A.H., Wing, R.A., 1994. Construction and characterization of a bacterial artificial chromosome library of Sorghum bicolor. Nucleic Acids Res. 22, 4922-4931.
59. Zupan, J.R., Zambryski, P., 1995. Transfer of T-DNA from Agrobacterium to the plant cell. Plant Physiol. 107, 1041-1047.
60. Zupan, J.R., Citovsky, V., Zambryski, P., 1996. Agrobacterium VirE2 protein mediates nuclear uptake of single-stranded DNA in plant cells. Proc. Natl. Acad. Sci. USA 93, 2392-2397.