메뉴 건너뛰기




Volumn 75, Issue 1, 1999, Pages 59-65

Replication in vitro and cleavage by restriction endonuclease of 5- formyluracil- and 5-hydroxymethyluracil-containing oligonucleotides

Author keywords

[No Author keywords available]

Indexed keywords

5 FORMYLURACIL; 5 HYDROXYMETHYLURACIL; CYTOSINE; DNA; DNA DIRECTED DNA POLYMERASE BETA; DNA GLYCOSYLTRANSFERASE; DNA POLYMERASE; OLIGONUCLEOTIDE; RESTRICTION ENDONUCLEASE; THYMINE; UNCLASSIFIED DRUG;

EID: 0032928474     PISSN: 09553002     EISSN: None     Source Type: Journal    
DOI: 10.1080/095530099140816     Document Type: Article
Times cited : (25)

References (35)
  • 1
    • 0028045942 scopus 로고
    • DNA glycosylase activities for thymine residues oxidized in the methyl group are functions of the alkA enzyme in Escherichia coli
    • BJELLAND, S., BIRKELAND, N.-K., BENNECHE, T., VOLDEN, G. and SEEBERG, E., 1994, DNA glycosylase activities for thymine residues oxidized in the methyl group are functions of the alkA enzyme in Escherichia coli. Journal of Biological Chemistry, 269, 30489-30495.
    • (1994) Journal of Biological Chemistry , vol.269 , pp. 30489-30495
    • Bjelland, S.1    Birkeland, N.-K.2    Benneche, T.3    Volden, G.4    Seeberg, E.5
  • 2
    • 0028844785 scopus 로고
    • Oxidation of thymine to 5-formyluracil in DNA: Mechanisms of formation, structural implications, and base excision by human cell free extracts
    • BJELLAND, S., EIDE, L., TIME, R. W., STOKE, R., EFTEDAL, I., VOLDEN, G. and SEEBERG, E., 1995, Oxidation of thymine to 5-formyluracil in DNA: mechanisms of formation, structural implications, and base excision by human cell free extracts. Biochemistry, 34, 14758-14764.
    • (1995) Biochemistry , vol.34 , pp. 14758-14764
    • Bjelland, S.1    Eide, L.2    Time, R.W.3    Stoke, R.4    Eftedal, I.5    Volden, G.6    Seeberg, E.7
  • 3
    • 0029060007 scopus 로고
    • DNA base excision repair of 5-hydroxymethyl-2′-deoxyuridine stimulates poly(ADP-ribose) synthesis in Chinese hamster cells
    • BOORSTEIN, R. J., HALDER, J., POIRIER, G. and PUTNAM, D., 1995, DNA base excision repair of 5-hydroxymethyl-2′-deoxyuridine stimulates poly(ADP-ribose) synthesis in Chinese hamster cells. Carcinogenesis, 16, 1173-1179.
    • (1995) Carcinogenesis , vol.16 , pp. 1173-1179
    • Boorstein, R.J.1    Halder, J.2    Poirier, G.3    Putnam, D.4
  • 4
    • 0023274994 scopus 로고
    • 5-Hydroxymethyluracil-DNA glycosylase activity may be a differentiated mammalian function
    • BOORSTEIN, R. J., LEVY, D. D. and TEEBOR, G. W., 1987, 5-Hydroxymethyluracil-DNA glycosylase activity may be a differentiated mammalian function. Mutation Research, 183, 257-263.
    • (1987) Mutation Research , vol.183 , pp. 257-263
    • Boorstein, R.J.1    Levy, D.D.2    Teebor, G.W.3
  • 5
    • 0020628698 scopus 로고
    • Resistance of bacteriophage H1 to restriction and modification by Bacillus subtilis R
    • BRON, S., LUXEN, E. and VENEMA, G., 1983, Resistance of bacteriophage H1 to restriction and modification by Bacillus subtilis R. Journal of Virology, 46, 703-708.
    • (1983) Journal of Virology , vol.46 , pp. 703-708
    • Bron, S.1    Luxen, E.2    Venema, G.3
  • 6
    • 0028342951 scopus 로고
    • Repair of oxidative damage to DNA: Enzymology and biology
    • DEMPLE, B. and HARRISON, L., 1994, Repair of oxidative damage to DNA: enzymology and biology. Annual Review of Biochemistry, 63, 915-948.
    • (1994) Annual Review of Biochemistry , vol.63 , pp. 915-948
    • Demple, B.1    Harrison, L.2
  • 7
    • 0029866502 scopus 로고    scopus 로고
    • Site-specific induction and repair of benzo[a]pyrene diol epoxide DNA damage in human H-ras protooncogene as revealed by restriction cleavage inhibition
    • DENISSENKO, M. F., VENKATACHALAM, S., MA, Y. H. and WANI, A. A., 1996, Site-specific induction and repair of benzo[a]pyrene diol epoxide DNA damage in human H-ras protooncogene as revealed by restriction cleavage inhibition. Mutation Research, 363, 27-42.
    • (1996) Mutation Research , vol.363 , pp. 27-42
    • Denissenko, M.F.1    Venkatachalam, S.2    Ma, Y.H.3    Wani, A.A.4
  • 8
    • 0002086393 scopus 로고
    • Chemistry of free radical damage to DNA and nucleo-proteins
    • edited by B. Halliwell and O. I. Aruoma (West Sussex: Ellis Horwood)
    • DIZDAROGLU, M., 1993, Chemistry of free radical damage to DNA and nucleo-proteins. In DNA and Free Radicals, edited by B. Halliwell and O. I. Aruoma (West Sussex: Ellis Horwood,) pp. 19-39.
    • (1993) DNA and Free Radicals , pp. 19-39
    • Dizdaroglu, M.1
  • 10
    • 0025786078 scopus 로고
    • Oxidative stress responses in Escherichia coli and Salmonella typhimurium
    • FARR, S. B. and KOGOMA, T., 1991, Oxidative stress responses in Escherichia coli and Salmonella typhimurium. Microbiological Reviews, 55, 561-585.
    • (1991) Microbiological Reviews , vol.55 , pp. 561-585
    • Farr, S.B.1    Kogoma, T.2
  • 12
    • 0026635843 scopus 로고
    • Reduced 5-hydroxymethyluracil-DNA glycosylase activity in Werner's syndrome cells
    • GANGULY, T. and DUKER, N. J., 1992, Reduced 5-hydroxymethyluracil-DNA glycosylase activity in Werner's syndrome cells. Mutation Research, 275, 87-96.
    • (1992) Mutation Research , vol.275 , pp. 87-96
    • Ganguly, T.1    Duker, N.J.2
  • 13
    • 0025126555 scopus 로고
    • Role of free radicals and catalytic metal ions in human disease: Overview
    • HALLIWELL, B. and GUTTERIDGE, J. M. C., 1990, Role of free radicals and catalytic metal ions in human disease: overview. Methods in Enzymology, 186, 1-85.
    • (1990) Methods in Enzymology , vol.186 , pp. 1-85
    • Halliwell, B.1    Gutteridge, J.M.C.2
  • 15
    • 0028929892 scopus 로고
    • Misincorporation of dAMP opposite 2-hydroxyadenine, an oxidative form of adenine
    • KAMIYA, H., UEDA, T., OHGI, T., MATSUKAGE, A. and KASAI, H., 1995, Misincorporation of dAMP opposite 2-hydroxyadenine, an oxidative form of adenine. Nucleic Acids Research, 23, 761-766.
    • (1995) Nucleic Acids Research , vol.23 , pp. 761-766
    • Kamiya, H.1    Ueda, T.2    Ohgi, T.3    Matsukage, A.4    Kasai, H.5
  • 16
    • 0025220483 scopus 로고
    • 5-Formyldeoxyuridine: A new type of DNA damage induced by ionizing radiation and its mutagenicity to Salmonella strain TA102
    • KASAI, H., IIDA, A., YAMAIZUMI, Z., NISHIMURA, S. and TANOOKA, H., 1990, 5-Formyldeoxyuridine: a new type of DNA damage induced by ionizing radiation and its mutagenicity to Salmonella strain TA102. Mutation Research, 243, 249-253.
    • (1990) Mutation Research , vol.243 , pp. 249-253
    • Kasai, H.1    Iida, A.2    Yamaizumi, Z.3    Nishimura, S.4    Tanooka, H.5
  • 17
    • 0025737777 scopus 로고
    • Site directed substitution of 5-hydroxymethyluracil for thymine in replicating φX-174am3 DNA via synthesis of 5-hydroxymethyl-2′-deoxyuridine-5′-triphosphate
    • LEVY, D. D. and TEEBOR, G. W., 1991, Site directed substitution of 5-hydroxymethyluracil for thymine in replicating φX-174am3 DNA via synthesis of 5-hydroxymethyl-2′-deoxyuridine-5′-triphosphate. Nucleic Acids Research, 19, 3337-3343.
    • (1991) Nucleic Acids Research , vol.19 , pp. 3337-3343
    • Levy, D.D.1    Teebor, G.W.2
  • 18
    • 0027751348 scopus 로고
    • Nucleosides and nucleotides. 126. Incorporation of a mutagenic nucleoside, 5-formyl-2′-deoxyuridine, into an oligodeoxyribonucleotide
    • MATSUDA, A., INADA, M., NARA, H., OHTSUKA, E. and ONO, A., 1993, Nucleosides and nucleotides. 126. Incorporation of a mutagenic nucleoside, 5-formyl-2′-deoxyuridine, into an oligodeoxyribonucleotide. Bioorganic and Medicinal Chemistry Letters, 3, 2751-2754.
    • (1993) Bioorganic and Medicinal Chemistry Letters , vol.3 , pp. 2751-2754
    • Matsuda, A.1    Inada, M.2    Nara, H.3    Ohtsuka, E.4    Ono, A.5
  • 19
    • 0029758242 scopus 로고    scopus 로고
    • The paradoxical influence of thymine analogues on restriction endonuclease cleavage of oligodeoxynucleotides
    • MAZUREK, M. and SOWERS, L. C., 1996, The paradoxical influence of thymine analogues on restriction endonuclease cleavage of oligodeoxynucleotides. Biochemistry, 35, 11422-11428.
    • (1996) Biochemistry , vol.35 , pp. 11422-11428
    • Mazurek, M.1    Sowers, L.C.2
  • 20
    • 0027257707 scopus 로고
    • Structures of base pairs with 5-(hydroxymethyl)-2′-deoxyuridine in DNA determined by NMR spectroscopy
    • MELLAC, S., FAZAKERLEY, G. V. and SOWERS, L. C., 1993, Structures of base pairs with 5-(hydroxymethyl)-2′-deoxyuridine in DNA determined by NMR spectroscopy. Biochemistry, 32, 7779-7786.
    • (1993) Biochemistry , vol.32 , pp. 7779-7786
    • Mellac, S.1    Fazakerley, G.V.2    Sowers, L.C.3
  • 21
    • 0030941660 scopus 로고    scopus 로고
    • Lack of phenotypic alteration of hmUra-DNA glycosylase-deficient hamster cells exposed to DNA-damaging agents
    • MI, L. J., MAHL, E., CHAUNG, W. and BOORSTEIN, R. J., 1997, Lack of phenotypic alteration of hmUra-DNA glycosylase-deficient hamster cells exposed to DNA-damaging agents. Mutation Research, 374, 287-295.
    • (1997) Mutation Research , vol.374 , pp. 287-295
    • Mi, L.J.1    Mahl, E.2    Chaung, W.3    Boorstein, R.J.4
  • 22
    • 0028341311 scopus 로고
    • Major oxidative products of cytosine, 5-hydroxycytosine and 5-hydroxyuracil, exhibit sequence context-dependent mispairing in vitro
    • PURMAL, A. A., KOW, Y. W. and WALLACE, S. S., 1994, Major oxidative products of cytosine, 5-hydroxycytosine and 5-hydroxyuracil, exhibit sequence context-dependent mispairing in vitro. Nucleic Acids Research, 22, 72-78.
    • (1994) Nucleic Acids Research , vol.22 , pp. 72-78
    • Purmal, A.A.1    Kow, Y.W.2    Wallace, S.S.3
  • 23
    • 0018893073 scopus 로고
    • Unusual behavior of SPO1 DNA with respect to restriction and modification enzymes recognizing the sequence 5′-G-G-C-C
    • REEVE, J. N., AMANN, E., TAILOR, R., GUNTHERT, U., SCHOLZ, K. and TRAUTNER, T. A., 1980, Unusual behavior of SPO1 DNA with respect to restriction and modification enzymes recognizing the sequence 5′-G-G-C-C. Molecular and General Genetics, 178, 229-231.
    • (1980) Molecular and General Genetics , vol.178 , pp. 229-231
    • Reeve, J.N.1    Amann, E.2    Tailor, R.3    Gunthert, U.4    Scholz, K.5    Trautner, T.A.6
  • 24
    • 0023046807 scopus 로고
    • Hydrolysis by restriction endonucleases at their DNA recognition sequences substituted with mismatched base pairs
    • SHENOY, S., DAIGLE, K., EHRLICH, K. C., GEHRK, C. W. and EHRLICH, M., 1986, Hydrolysis by restriction endonucleases at their DNA recognition sequences substituted with mismatched base pairs. Nucleic Acids Research, 14, 4407-4420.
    • (1986) Nucleic Acids Research , vol.14 , pp. 4407-4420
    • Shenoy, S.1    Daigle, K.2    Ehrlich, K.C.3    Gehrk, C.W.4    Ehrlich, M.5
  • 25
    • 0025981359 scopus 로고
    • Insertion of specific bases during DNA synthesis past the oxidation-damaged base 8-oxodG
    • SHIBUTANI, S., TAKESHITA, M. and GROLLMAN, A. P., 1991, Insertion of specific bases during DNA synthesis past the oxidation-damaged base 8-oxodG. Nature, 349, 431-434.
    • (1991) Nature , vol.349 , pp. 431-434
    • Shibutani, S.1    Takeshita, M.2    Grollman, A.P.3
  • 26
    • 0030577491 scopus 로고    scopus 로고
    • New synthetic method of 5-formyluracil-containing oligonucleotides and their melting behavior
    • SUGIYAMA, H., MATSUDA, S., ZHANG, Q.-M., YONEI, S. and SAITO, I., 1996, New synthetic method of 5-formyluracil-containing oligonucleotides and their melting behavior. Tetrahedron Letters, 37, 9067-9070.
    • (1996) Tetrahedron Letters , vol.37 , pp. 9067-9070
    • Sugiyama, H.1    Matsuda, S.2    Zhang, Q.-M.3    Yonei, S.4    Saito, I.5
  • 28
    • 0024437348 scopus 로고
    • Effect of metals on nucleoside hydroperoxide, a product of ionizing radiation in DNA
    • TOFIGH, S. and FRENKEL, K., 1989, Effect of metals on nucleoside hydroperoxide, a product of ionizing radiation in DNA. Free Radical Biology and Medicine, 7, 131-143.
    • (1989) Free Radical Biology and Medicine , vol.7 , pp. 131-143
    • Tofigh, S.1    Frenkel, K.2
  • 29
    • 0028859673 scopus 로고
    • Restriction, methylation and ligation of 5-hydroxymethyluracil-containing DNA
    • VILPO, J. A. and VILPO, L. M., 1995, Restriction, methylation and ligation of 5-hydroxymethyluracil-containing DNA. Mutation Research, 316, 123-131.
    • (1995) Mutation Research , vol.316 , pp. 123-131
    • Vilpo, J.A.1    Vilpo, L.M.2
  • 30
    • 0025195072 scopus 로고
    • 6-methylguanine in place of guanine causes asymmetric single-strand cleavage of DNA by some restriction enzymes
    • 6-methylguanine in place of guanine causes asymmetric single-strand cleavage of DNA by some restriction enzymes. Biochemistry, 29, 1632-1637.
    • (1990) Biochemistry , vol.29 , pp. 1632-1637
    • Voigt, J.M.1    Topal, M.D.2
  • 31
    • 0024988298 scopus 로고
    • Radical-mediated DNA damage in presence of oxygen
    • VON SONNTAG, C. and SCHUCHMANN, H. P., 1990, Radical-mediated DNA damage in presence of oxygen. Methods in Enzymology, 186, 511-520.
    • (1990) Methods in Enzymology , vol.186 , pp. 511-520
    • Von Sonntag, C.1    Schuchmann, H.P.2
  • 33
    • 0028151464 scopus 로고
    • DNA damages processed by base excision repair: Biological consequences
    • WALLACE, S. S., 1994, DNA damages processed by base excision repair: biological consequences. International Journal of Radiation Biology, 66, 579-589.
    • (1994) International Journal of Radiation Biology , vol.66 , pp. 579-589
    • Wallace, S.S.1
  • 34
    • 0029565604 scopus 로고
    • Enzymatic release of 5-formyluracil by mammalian liver extracts from DNA irradiated with ionizing radiation
    • ZHANG, Q.-M., FUJIMOTO, J. and YONEI, S., 1995, Enzymatic release of 5-formyluracil by mammalian liver extracts from DNA irradiated with ionizing radiation. International Journal of Radiation Biology, 68, 603-607.
    • (1995) International Journal of Radiation Biology , vol.68 , pp. 603-607
    • Zhang, Q.-M.1    Fujimoto, J.2    Yonei, S.3
  • 35
    • 0030791720 scopus 로고    scopus 로고
    • Replication of DNA templates containing 5-formyluracil, a major oxidative lesion of thymine in DNA
    • ZHANG, Q.-M., SUGIYAMA, H., MIYABE, I., MATSUDA, S., SAITO, I. and YONEI, S., 1997, Replication of DNA templates containing 5-formyluracil, a major oxidative lesion of thymine in DNA. Nucleic Acids Research, 25, 3969-3973.
    • (1997) Nucleic Acids Research , vol.25 , pp. 3969-3973
    • Zhang, Q.-M.1    Sugiyama, H.2    Miyabe, I.3    Matsuda, S.4    Saito, I.5    Yonei, S.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.