The paradoxical influence of thymine analogues on restriction endonuclease cleavage of oligodeoxynucleotides

Biochemistry

Volumn 35, Issue 35, 1996, Pages 11522-11528

  Mazurek, Mark ^a   Sowers, Lawrence C ^a  

^a CITY OF HOPE NATIONAL MEDICAL CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

5 HYDROXYMETHYLURACIL; DNA; OLIGODEOXYNUCLEOTIDE DERIVATIVE; RESTRICTION ENDONUCLEASE; THYMINE DERIVATIVE; URACIL; URACIL DERIVATIVE;

ARTICLE; CONTROLLED STUDY; ENZYME DEGRADATION; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN DNA INTERACTION;

BINDING SITES; DEOXYRIBONUCLEASES, TYPE II SITE-SPECIFIC; ELECTROPHORESIS, POLYACRYLAMIDE GEL; FLUORESCEINS; FLUORESCENCE; FLUORESCENT DYES; HYDROLYSIS; KINETICS; MOLECULAR STRUCTURE; OLIGODEOXYRIBONUCLEOTIDES; PENTOXYL; THYMINE; URACIL;

EUKARYOTA;

EID: 0029758242     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi953012j     Document Type: Article

References (43)

1. Alves, J., Pingoud, A., Langowski, J., Urbanke, C., & Maass, G. (1982) Eur. J. Biochem. 124, 139-142.
2. Berkner, K. L., & Folk, W. R. (1977) J. Biol. Chem. 252, 3185-3193.
3. Berkner, K. L., & Folk, W. R. (1979) J. Biol. Chem. 254, 2551-2560.
4. Bodnar, J. W., Zempsky, W., Warder, D., Bergson, C., & Ward, D. C. (1983) J. Biol. Chem. 258, 15206-15213.
5. Brennan, C. A., Van Cleve, M. D., & Gumport, R. I. (1986) J. Biol. Chem. 261, 7270-7278.
6. Cannon-Carlson, S. V., Gokhale, H., & Teebor, G. W. (1989) J. Biol. Chem. 264, 13306-13312.
7. Carbonnaux, C., Fazakerley, G. V., & Sowers, L. C. (1990) Nucleic Acids Res. 18, 4075-4081.
8. Delort, A.-M. Neumann, J. M., Molko, D., Hervé, M., Téoule, R., & Dinh, S. T. (1985) Nucleic Acids Res. 13, 3343-3355.
9. Djuric, Z., Luongo, D. A., & Harper, D. A. (1991) Chem. Res. Toxicol. 4, 687-691.
10. Fliess, A., Wolfes, H., Rosenthal, A., Schwellnus, K., Blöcker, H., Frank, R., & Pingoud, A. (1986) Nucleic Acids Res. 14, 3463-3474.
11. Fliess, A., Wolfes, H., Seela, F., & Pingoud, A. (1988) Nucleic Acids Res. 16, 11781-11793.
12. Frenkel, K., Zhong, Z., Wei, H., Karkoszka, J., Patel, U., Rashid, K., Georgescu, M., & Solomon, J. J. (1991) Anal. Biochem. 196, 126-136.
13. Gait, M. J., Ed. (1984) Oligonucleotide Synthesis, a practical approach, IRL Press, Washington, DC.
14. Goeddel, D. V., Yansura, D. G., & Caruthers, M. H. (1977) Nucleic Acids Res. 4, 3039-3054.
15. Hansch, C., Leo, A., Unger, S. H., Kim, K. H., Nikaitani, D., & Lien, E. J. (1973) J. Med. Chem. 16, 1207-1216.
16. Hayakawa, T., Ono, A., & Udea, T. (1988) Nucleic Acids Res. 16, 4761-4776.
17. Hoet, P. P., Coene, M. M., & Cocito, C. G. (1992) Annu. Rev. Microbiol. 46, 95-116.
18. Hollstein, M. C., Brooks, P., Linn, S., & Ames, B. N. (1984) Proc. Natl. Acad. Sci. U.S.A. 81, 4003-4007.
19. Huang, L.-H., Farnet, C. M., Ehrlich, K. C., & Ehrlich, M. (1982) Nucleic Acids Res. 10, 1579-1591.
20. Ivarie, R. (1987) Nucleic Acids Res. 15, 9975-9983.
21. Jack, W. E., Terry, B. J., & Modrich, P. (1982) Proc. Natl. Acad. Sci. U.S.A. 79, 4010-4014.
22. Jansco, A., Botfield, M. C., Sowers, L. C., & Weiss, M. A. (1994) Proc. Natl. Acad. Sci. U.S.A. 91, 3887-3891.
23. Jen-Jacobson, L., Kurpiewski, M., Lesser, D., Grable, J., Boyer, H. W., Rosenberg, J. M., & Greene, P. J. (1983) J. Biol. Chem. 258, 14638-14646.
24. Kang, Y. K., Lee, H. B., Noh, M. J., Cho, N.-Y., & Yoo, O. J. (1995) Biochem. Biophys. Res. Commun. 206, 997-1002.
25. Kasai, H., Crain, P. F., Kuchino, Y., Nishimura, S., Ootsuyama, A., & Tanooka, H. (1986) Carcinogenesis 7, 1849-1851.
26. Lesser, D. R., Kurpiewski, M. R., Waters, T., Connolly, B. A., & Jen-Jacobson, L. (1993) Proc. Natl. Acad. Sci. U.S.A. 90, 7548-7552.
27. Lindahl, T. (1974) Proc. Natl. Acad. Sci. U.S.A. 71, 3649-3653.
28. Lu, A.-L., Jack, W. E., & Modrich, P. (1981) J. Biol. Chem. 256, 13200-13206.
29. Mazzarelli, J., Scholtissek, S., & McLaughlin, L. W. (1989) Biochemistry 28, 4616-4622.
30. McClarin, J. A., Frederick, C. A., Wang, B.-C., Greene, P., Boyer, H. W., Grable, J., & Rosenberg, J. M. (1986) Science 234, 1526-1541.
31. McClelland, M., Nelson, M., & Raschke, E. (1994) Nucleic Acids Res. 22, 3640-3659.
32. McLaughlin, L. W., Benseler, F., Graeser, E., Piel, N., & Scholtissek, S. (1987) Biochemistry 26, 7238-7245.
33. Mellac, S., Fazakerley, G. V., & Sowers, L. C. (1993) Biochemistry 32, 7779-7786.
34. Modrich, P., & Zabel, D. (1976) J. Biol. Chem. 251, 5866-5874.
35. Newman, P. C., Nwosu, V. U., Williams, D. M., Cosstick, R., Seela, F., & Connolly, B. A. (1990) Biochemistry 29, 9891-9901.
36. Petruska, J., & Horn, D. (1983) Nucleic Acids Res. 11, 2495-2510.
37. Pu, W. T., & Strahl, K. (1992) Nucleic Acids Res. 20, 771-775.
38. Richards, R. G., Sowers, L. C., Laszlo, J., & Sedwick, W. D. (1984) Adv. Enzyme Regulation 22, 157-185.
39. Rubin, R. A., & Modrich, P. (1978) Nucleic Acids Res. 5, 2991-2997.
40. Sowers, L. C., & Beardsley, G. P (1993) J. Org. Chem. 58, 1664-1665.
41. Terry, B. J., Jack, W. E., Rubin, R. A., & Modrich, P. A. (1983) J. Biol. Chem. 258, 9820-9825.
42. Zebala, J. A., Choi, J., & Barany, F. (1992a) J. Biol. Chem. 267, 8097-8105.
43. Zebala, J. A., Choi, J., Trainor, G. L., & Barany, F. (1992b) J. Biol. Chem. 267, 8106-8116.