메뉴 건너뛰기




Volumn 76, Issue 1 I, 1999, Pages 149-163

Long-time dynamics of met-enkephalin: Comparison of theory with Brownian dynamics simulations

Author keywords

[No Author keywords available]

Indexed keywords

GLYCINE; METENKEPHALIN; NEUROTRANSMITTER; OLIGOMER; PHENYL GROUP; SOLVENT;

EID: 0032907372     PISSN: 00063495     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0006-3495(99)77185-7     Document Type: Article
Times cited : (19)

References (47)
  • 2
    • 0017355381 scopus 로고
    • A proton magnetic resonance study of the conformation of metenkephalin as a function of pH
    • Anteunis, M., A. K. Lala, C. Garbay-Jaureguiberry, and B. P. Roques. 1977. A proton magnetic resonance study of the conformation of metenkephalin as a function of pH. Biochemistry. 16:1462-1466.
    • (1977) Biochemistry , vol.16 , pp. 1462-1466
    • Anteunis, M.1    Lala, A.K.2    Garbay-Jaureguiberry, C.3    Roques, B.P.4
  • 3
    • 0001295503 scopus 로고    scopus 로고
    • Principal component analysis and long time dynamics
    • Balsera, M. A., W. Wriggers, Y. Oono, and K. Schulten. 1996. Principal component analysis and long time dynamics. J. Phys. Chem. 100: 2567-2572.
    • (1996) J. Phys. Chem. , vol.100 , pp. 2567-2572
    • Balsera, M.A.1    Wriggers, W.2    Oono, Y.3    Schulten, K.4
  • 4
    • 0025779179 scopus 로고
    • Solution structures of β peptide and its constituent fragments: Relation to amyloid deposition
    • Barrow, C. J. and M. G. Zagorski. 1991. Solution structures of β peptide and its constituent fragments: Relation to amyloid deposition. Science. 253:179-182.
    • (1991) Science , vol.253 , pp. 179-182
    • Barrow, C.J.1    Zagorski, M.G.2
  • 5
    • 0021744614 scopus 로고
    • Evidence for a folded conformation of methionine- and leucine-enkephalin in a membrane environment
    • Benham, B. A. and C. M. Deber. 1984. Evidence for a folded conformation of methionine- and leucine-enkephalin in a membrane environment. J. Biol. Chem. 259:14935-14940.
    • (1984) J. Biol. Chem. , vol.259 , pp. 14935-14940
    • Benham, B.A.1    Deber, C.M.2
  • 6
    • 36749112063 scopus 로고
    • Optimized Rouse-Zimm theory for stiff polymers
    • Bixon, M. and R. Zwanzig. 1978. Optimized Rouse-Zimm theory for stiff polymers. J. Chem. Phys. 68: 1896-1902.
    • (1978) J. Chem. Phys. , vol.68 , pp. 1896-1902
    • Bixon, M.1    Zwanzig, R.2
  • 7
    • 0001031179 scopus 로고
    • Proteins: A theoretical perspective of dynamics, structure and thermodynamics
    • Brooks, C. L. III, M. Karplus, and B. M. Pettitt. 1988. Proteins: A theoretical perspective of dynamics, structure and thermodynamics. Adv. Chem. Phys. 71: 1-259.
    • (1988) Adv. Chem. Phys. , vol.71 , pp. 1-259
    • Brooks C.L. III1    Karplus, M.2    Pettitt, B.M.3
  • 8
    • 33748671294 scopus 로고
    • Test of theory for long time dynamics of floppy molecules in solution using Brownian dynamics simulation of octane
    • Chang, X. Y. and K. F. Freed. 1993. Test of theory for long time dynamics of floppy molecules in solution using Brownian dynamics simulation of octane. J. Chem. Phys. 99:8016-8030.
    • (1993) J. Chem. Phys. , vol.99 , pp. 8016-8030
    • Chang, X.Y.1    Freed, K.F.2
  • 9
    • 0037889340 scopus 로고
    • Pico-second fluorescence studies of polypeptide dynamics: Fluorescence anisotropies and lifetimes
    • Chen, L. X. Q., J. W. Petrich, G. R. Fleming, and A. Perico. 1987. Pico-second fluorescence studies of polypeptide dynamics: fluorescence anisotropies and lifetimes. Chem. Phys. Lett. 139: 55-61.
    • (1987) Chem. Phys. Lett. , vol.139 , pp. 55-61
    • Chen, L.X.Q.1    Petrich, J.W.2    Fleming, G.R.3    Perico, A.4
  • 10
    • 0344103033 scopus 로고
    • Peptide dynamics in triglycine: Coupling of internal bond rotations and overall molecular tumbling
    • Daragan, V. A. and K. H. Mayo. 1994. Peptide dynamics in triglycine: coupling of internal bond rotations and overall molecular tumbling. J. Phys. Chem. 98:10949-10956.
    • (1994) J. Phys. Chem. , vol.98 , pp. 10949-10956
    • Daragan, V.A.1    Mayo, K.H.2
  • 11
    • 0001773586 scopus 로고
    • Continuum-configurational-bias Monte Carlo simulations of long-chain alkanes
    • de Pablo, J. J., M. Laso, J. I. Siepmann, and U. W. Suter. 1993. Continuum-configurational-bias Monte Carlo simulations of long-chain alkanes. Mol. Phys. 80:55-63.
    • (1993) Mol. Phys. , vol.80 , pp. 55-63
    • De Pablo, J.J.1    Laso, M.2    Siepmann, J.I.3    Suter, U.W.4
  • 12
    • 0031168817 scopus 로고    scopus 로고
    • Large scale simulation of macromolecules in solution: Combining the periodic fast multipole method with multiple time step integrators
    • Figueirido, F., R. M. Levy, R. Zhou, and B. J. Berne. 1997. Large scale simulation of macromolecules in solution: combining the periodic fast multipole method with multiple time step integrators. J. Chem. Phys. 106:9835-9849.
    • (1997) J. Chem. Phys. , vol.106 , pp. 9835-9849
    • Figueirido, F.1    Levy, R.M.2    Zhou, R.3    Berne, B.J.4
  • 13
    • 0030242340 scopus 로고    scopus 로고
    • Extended rotational isomeric state model for describing the long time dynamics of polymers
    • Guenza, M. and K. F. Freed. 1996. Extended rotational isomeric state model for describing the long time dynamics of polymers. J. Chem. Phys. 105:3823-3837.
    • (1996) J. Chem. Phys. , vol.105 , pp. 3823-3837
    • Guenza, M.1    Freed, K.F.2
  • 14
    • 0027906143 scopus 로고
    • Static and dynamic structure factors for star polymers in θ conditions
    • Guenza, M. and A. Perico. 1993. Static and dynamic structure factors for star polymers in θ conditions. Macromolecules. 26:4196-4202.
    • (1993) Macromolecules , vol.26 , pp. 4196-4202
    • Guenza, M.1    Perico, A.2
  • 15
    • 0000833499 scopus 로고
    • Theory of long time peptide dynamics: Test of various reduced descriptions and role of internal variables
    • Hu, Y., G. R. Fleming, K. F. Freed, and A. Perico. 1991. Theory of long time peptide dynamics: test of various reduced descriptions and role of internal variables. Chem. Phys. 158:395-408.
    • (1991) Chem. Phys. , vol.158 , pp. 395-408
    • Hu, Y.1    Fleming, G.R.2    Freed, K.F.3    Perico, A.4
  • 16
    • 0001410686 scopus 로고
    • Extended molecular dynamics and optimized Rouse-Zimm model studies of a short peptide: Various friction approximations
    • Hu, Y., K. S. Kostov, A. Perico, S. Smithline, and K. F. Freed. 1995. Extended molecular dynamics and optimized Rouse-Zimm model studies of a short peptide: various friction approximations. J. Chem. Phys. 103:9091-9100.
    • (1995) J. Chem. Phys. , vol.103 , pp. 9091-9100
    • Hu, Y.1    Kostov, K.S.2    Perico, A.3    Smithline, S.4    Freed, K.F.5
  • 18
    • 0002196716 scopus 로고
    • Transport coefficients near the liquid-gas critical point
    • Kadanoff, L. P. and J. Swift. 1968. Transport coefficients near the liquid-gas critical point. Phys. Rev. 166:89-101.
    • (1968) Phys. Rev. , vol.166 , pp. 89-101
    • Kadanoff, L.P.1    Swift, J.2
  • 19
    • 0344534381 scopus 로고
    • Mode coupling description of dynamics in dilute polymer solutions
    • Kapral, R., D. Ng, and S. G. Whittington. 1976. Mode coupling description of dynamics in dilute polymer solutions. J. Chem. Phys. 64:539-545.
    • (1976) J. Chem. Phys. , vol.64 , pp. 539-545
    • Kapral, R.1    Ng, D.2    Whittington, S.G.3
  • 20
    • 33646489567 scopus 로고
    • Kinetic equations and time correlation functions of critical fluctuations
    • Kawazaki, K. 1970. Kinetic equations and time correlation functions of critical fluctuations. Ann. Phys. 61:1-56.
    • (1970) Ann. Phys. , vol.61 , pp. 1-56
    • Kawazaki, K.1
  • 21
    • 0029015766 scopus 로고
    • pH-dependent conformations of the amyloid β(1-28) peptide fragment explored using molecular dynamics
    • Kirshenbaum, K. and V. Daggett. 1995. pH-dependent conformations of the amyloid β(1-28) peptide fragment explored using molecular dynamics. Biochemistry. 34:7629-7639.
    • (1995) Biochemistry , vol.34 , pp. 7629-7639
    • Kirshenbaum, K.1    Daggett, V.2
  • 22
    • 0000524826 scopus 로고    scopus 로고
    • Mode coupling theory for calculating the memory functions of flexible chain molecules: Influence on the long time dynamics of oligoglycines
    • Kostov, K. S. and K. F. Freed. 1997. Mode coupling theory for calculating the memory functions of flexible chain molecules: influence on the long time dynamics of oligoglycines. J. Chem. Phys. 106:771-783.
    • (1997) J. Chem. Phys. , vol.106 , pp. 771-783
    • Kostov, K.S.1    Freed, K.F.2
  • 23
    • 0012700897 scopus 로고    scopus 로고
    • Mode coupling theory for calculating the memory functions of flexible polymers: Local dynamics of oligoglycines
    • Kostov, K. S. and K. F. Freed. 1998. Mode coupling theory for calculating the memory functions of flexible polymers: local dynamics of oligoglycines. J. Chem. Phys. 108:8277-8278.
    • (1998) J. Chem. Phys. , vol.108 , pp. 8277-8278
    • Kostov, K.S.1    Freed, K.F.2
  • 25
    • 0023430366 scopus 로고
    • Monte Carlo minimization approach to the multiple minima problem in protein folding
    • Li, Z. and H. Scheraga. 1987. Monte Carlo minimization approach to the multiple minima problem in protein folding. Proc. Natl. Acad. Sci. U.S.A. 84:6611-6615.
    • (1987) Proc. Natl. Acad. Sci. U.S.A. , vol.84 , pp. 6611-6615
    • Li, Z.1    Scheraga, H.2
  • 26
    • 33646719091 scopus 로고
    • Model-free approach to the interpretation of nuclear magnetic resonance relaxation in macromolecules. I. Theory and range of validity
    • Lipari, G. and A. Szabo. 1982. Model-free approach to the interpretation of nuclear magnetic resonance relaxation in macromolecules. I. Theory and range of validity. J. Am. Chem. Soc. 104:4545-4559.
    • (1982) J. Am. Chem. Soc. , vol.104 , pp. 4545-4559
    • Lipari, G.1    Szabo, A.2
  • 27
    • 0000087315 scopus 로고
    • Hydrodynamic theory for vibrational relaxation in liquids
    • Metiu, H., D. W. Oxtoby, and K. F. Freed. 1977. Hydrodynamic theory for vibrational relaxation in liquids. Phys. Rev. A. 15:361-371.
    • (1977) Phys. Rev. A , vol.15 , pp. 361-371
    • Metiu, H.1    Oxtoby, D.W.2    Freed, K.F.3
  • 28
    • 0005485050 scopus 로고
    • Simulated annealing of met-enkephalin: Low energy states and their relevance to membrane-bound, solution and solid-state conformations
    • Montcalm, T., W. Cui, H. Zhao, F. Guarnieri, and S. R. Wilson. 1994. Simulated annealing of met-enkephalin: low energy states and their relevance to membrane-bound, solution and solid-state conformations. J. Mol. Struct. (Theochem) 308: 37-51.
    • (1994) J. Mol. Struct. (Theochem) , vol.308 , pp. 37-51
    • Montcalm, T.1    Cui, W.2    Zhao, H.3    Guarnieri, F.4    Wilson, S.R.5
  • 29
    • 0000514837 scopus 로고
    • Transport, collective motion, and Brownian motion
    • Mori, H. 1965. Transport, collective motion, and Brownian motion. Prog. Theor. Phys. 33:423-455.
    • (1965) Prog. Theor. Phys. , vol.33 , pp. 423-455
    • Mori, H.1
  • 30
    • 0001692781 scopus 로고
    • Segmental relaxation in macromolecules
    • Perico, A. 1989. Segmental relaxation in macromolecules. Acc. Chem. Res. 22:336-342.
    • (1989) Acc. Chem. Res. , vol.22 , pp. 336-342
    • Perico, A.1
  • 31
    • 0001762260 scopus 로고
    • Viscoelastic relaxation of segment orientation in dilute polymer solutions
    • Perico, A., and M. Guenza. 1985. Viscoelastic relaxation of segment orientation in dilute polymer solutions. J. Chem. Phys. 83:3103-3108.
    • (1985) J. Chem. Phys. , vol.83 , pp. 3103-3108
    • Perico, A.1    Guenza, M.2
  • 32
    • 0031232626 scopus 로고    scopus 로고
    • Maximum correlation mode-coupling approach to the Smoluchowski dynamics of polymers
    • Perico, A. and R. Pratolongo. 1997. Maximum correlation mode-coupling approach to the Smoluchowski dynamics of polymers. Macromolecules. 30:5958-5969.
    • (1997) Macromolecules , vol.30 , pp. 5958-5969
    • Perico, A.1    Pratolongo, R.2
  • 33
    • 36449006073 scopus 로고
    • Positional time correlation functions for one-dimensional systems with barrier crossing: Memory function corrections to the optimized Rouse-Zimm approximation
    • Perico, A., R. Pratolongo, K. F. Freed, R. W. Pastor, and A. Szabo. 1993. Positional time correlation functions for one-dimensional systems with barrier crossing: memory function corrections to the optimized Rouse-Zimm approximation. J. Chem. Phys. 98:564-573.
    • (1993) J. Chem. Phys. , vol.98 , pp. 564-573
    • Perico, A.1    Pratolongo, R.2    Freed, K.F.3    Pastor, R.W.4    Szabo, A.5
  • 36
    • 0030836511 scopus 로고    scopus 로고
    • NMR characterization of the full-length recombinant murine prion protein, mPrP(23-231)
    • Riek, R., S. Hornemann, G. Wider, R. Glockshuber, and K. Wüthrich. 1997. NMR characterization of the full-length recombinant murine prion protein, mPrP(23-231). FEBS Lett. 413:282-288.
    • (1997) FEBS Lett. , vol.413 , pp. 282-288
    • Riek, R.1    Hornemann, S.2    Wider, G.3    Glockshuber, R.4    Wüthrich, K.5
  • 39
    • 0003974942 scopus 로고    scopus 로고
    • Chapman & Hall, Austin, TX
    • Subbiah, S., editor. 1996. Protein Motions. Chapman & Hall, Austin, TX.
    • (1996) Protein Motions
    • Subbiah, S.1
  • 40
    • 0001034217 scopus 로고
    • Theory for long time polymer and protein dynamics: Basis functions and time correlation functions
    • Tang, W. H., X. Y. Chang, and K. F. Freed. 1995. Theory for long time polymer and protein dynamics: basis functions and time correlation functions. J. Chem. Phys. 103:9492-9501.
    • (1995) J. Chem. Phys. , vol.103 , pp. 9492-9501
    • Tang, W.H.1    Chang, X.Y.2    Freed, K.F.3
  • 41
    • 0030972502 scopus 로고    scopus 로고
    • Molecular dynamics simulations of leu-enkephalin in water and DMSO
    • van der Spoel, D. and H. J. C. Berendsen. 1997. Molecular dynamics simulations of leu-enkephalin in water and DMSO. Biophys. J. 72: 2032-2041.
    • (1997) Biophys. J. , vol.72 , pp. 2032-2041
    • Van Der Spoel, D.1    Berendsen, H.J.C.2
  • 44
    • 0000831441 scopus 로고
    • A free energy based Monte Carlo minimization procedure for biomolecules
    • Vasquez, M., E. Meirovitch, and H. Meirovitch. 1994. A free energy based Monte Carlo minimization procedure for biomolecules. J. Phys. Chem. 98:9380-9382.
    • (1994) J. Phys. Chem. , vol.98 , pp. 9380-9382
    • Vasquez, M.1    Meirovitch, E.2    Meirovitch, H.3
  • 45
    • 0001299323 scopus 로고
    • The Langevin/implicit-Euler/normal-mode scheme for molecular dynamics at large time steps
    • Zhang, G. and T. Schlick. 1994. The Langevin/implicit-Euler/normal-mode scheme for molecular dynamics at large time steps. J. Chem. Phys. 101:4995-5012.
    • (1994) J. Chem. Phys. , vol.101 , pp. 4995-5012
    • Zhang, G.1    Schlick, T.2
  • 46
    • 36149013316 scopus 로고
    • Memory effects in irreversible thermodynamics
    • Zwanzig, R. 1961. Memory effects in irreversible thermodynamics. Phys. Rev. 124:983-992.
    • (1961) Phys. Rev. , vol.124 , pp. 983-992
    • Zwanzig, R.1
  • 47
    • 36749107514 scopus 로고
    • Theoretical basis for the Rouse-Zimm model in polymer solution dynamics
    • Zwanzig, R. 1974. Theoretical basis for the Rouse-Zimm model in polymer solution dynamics. J. Chem. Phys. 60:2717-2720.
    • (1974) J. Chem. Phys. , vol.60 , pp. 2717-2720
    • Zwanzig, R.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.