메뉴 건너뛰기




Volumn 8, Issue 5, 1999, Pages 969-977

The variable and conserved interfaces of modeled olfactory receptor proteins

Author keywords

Amino acid variability; GPCR; Helical moment; Olfactory receptors; Variable binding site

Indexed keywords

EPITOPE; GUANINE NUCLEOTIDE BINDING PROTEIN; LIGAND; RECEPTOR PROTEIN; RHODOPSIN;

EID: 0032900495     PISSN: 09618368     EISSN: None     Source Type: Journal    
DOI: 10.1110/ps.8.5.969     Document Type: Article
Times cited : (128)

References (53)
  • 1
    • 18344398255 scopus 로고    scopus 로고
    • Towards structural models of molecular recognition in olfactory receptors
    • Afshar M, Hubbard RE, Demaille J. 1998. Towards structural models of molecular recognition in olfactory receptors. Biochimie 80:129-135.
    • (1998) Biochimie , vol.80 , pp. 129-135
    • Afshar, M.1    Hubbard, R.E.2    Demaille, J.3
  • 2
    • 0029947902 scopus 로고    scopus 로고
    • A three-dimensional model of the delta opioid receptor and ligand-receptor complexes
    • Alkorta I, Loew GH, 1996. A three-dimensional model of the delta opioid receptor and ligand-receptor complexes. Protein Eng 9:573-583.
    • (1996) Protein Eng , vol.9 , pp. 573-583
    • Alkorta, I.1    Loew, G.H.2
  • 3
    • 0025878149 scopus 로고
    • Amino acid substitution matrices from an information theoretic perspective
    • Altschul S. 1991. Amino acid substitution matrices from an information theoretic perspective. J Mol Biol 219:555-565.
    • (1991) J Mol Biol , vol.219 , pp. 555-565
    • Altschul, S.1
  • 5
    • 0031582764 scopus 로고    scopus 로고
    • Properties of a generalized diversity index
    • Baczkowski A, Joanes D, Shamia G. 1997. Properties of a generalized diversity index. J Theor Biol 188:207-213.
    • (1997) J Theor Biol , vol.188 , pp. 207-213
    • Baczkowski, A.1    Joanes, D.2    Shamia, G.3
  • 6
    • 0028227013 scopus 로고
    • Structure and function of receptors coupled to G-proteins
    • Baldwin J. 1994. Structure and function of receptors coupled to G-proteins. Curr Opin Cell Biol 6:180-190.
    • (1994) Curr Opin Cell Biol , vol.6 , pp. 180-190
    • Baldwin, J.1
  • 7
    • 0031565726 scopus 로고    scopus 로고
    • An alpha-carbon template for the transmembrane helices in the rhodopsin family of G-protein-coupled receptors
    • Baldwin J, Schertler G, Unger V. 1997. An alpha-carbon template for the transmembrane helices in the rhodopsin family of G-protein-coupled receptors. J Mol Biol 272:144-164.
    • (1997) J Mol Biol , vol.272 , pp. 144-164
    • Baldwin, J.1    Schertler, G.2    Unger, V.3
  • 8
    • 0030025015 scopus 로고    scopus 로고
    • Asynchronous onset of odorant receptor expression in the developing zebrafish olfactory system
    • Barth A, Justice N, Ngai J. 1996. Asynchronous onset of odorant receptor expression in the developing zebrafish olfactory system. Neuron 16:23-34.
    • (1996) Neuron , vol.16 , pp. 23-34
    • Barth, A.1    Justice, N.2    Ngai, J.3
  • 13
    • 0025825726 scopus 로고
    • A novel multigene family may encode odorant receptors: A molecular basis for odor recognition
    • Buck L, Axel R. 1991. A novel multigene family may encode odorant receptors: A molecular basis for odor recognition. Cell 65:175-187.
    • (1991) Cell , vol.65 , pp. 175-187
    • Buck, L.1    Axel, R.2
  • 14
    • 0027465713 scopus 로고
    • Modeling the transmembrane seven helix bundle
    • Cronet P, Sander C, Vriend G. 1993. Modeling the transmembrane seven helix bundle. Protein Eng 6:59-64.
    • (1993) Protein Eng , vol.6 , pp. 59-64
    • Cronet, P.1    Sander, C.2    Vriend, G.3
  • 16
    • 0003552989 scopus 로고
    • Washington: National Biomedical Research Foundation
    • Dayhoff M. 1978. Atlas of protein sequence and structure. Washington: National Biomedical Research Foundation, pp 345-352.
    • (1978) Atlas of Protein Sequence and Structure , pp. 345-352
    • Dayhoff, M.1
  • 17
    • 0028235604 scopus 로고
    • The evolution and structure of aminergic G-protein-coupled receptors
    • Donnelly D, Findlay J, Blundell T. 1994. The evolution and structure of aminergic G-protein-coupled receptors. Receptors Channels 2:61-78.
    • (1994) Receptors Channels , vol.2 , pp. 61-78
    • Donnelly, D.1    Findlay, J.2    Blundell, T.3
  • 18
    • 0024362248 scopus 로고
    • An analysis of the periodicity of conserved residues in sequence alignment of G-protein-coupled receptors
    • Donnelly D, Johnson M, Blundell T, Saunders J. 1989. An analysis of the periodicity of conserved residues in sequence alignment of G-protein-coupled receptors. FEBS Lett 251:109-116.
    • (1989) FEBS Lett , vol.251 , pp. 109-116
    • Donnelly, D.1    Johnson, M.2    Blundell, T.3    Saunders, J.4
  • 19
    • 0027497369 scopus 로고
    • Modeling α-helical transmembrane domains: The calculation and use of substitution tables for lipid facing residues
    • Donnelly D, Overington J, Ruffle S, Nugent J, Blundel T. 1993. Modeling α-helical transmembrane domains: The calculation and use of substitution tables for lipid facing residues. Protein Sci 2:55-70.
    • (1993) Protein Sci , vol.2 , pp. 55-70
    • Donnelly, D.1    Overington, J.2    Ruffle, S.3    Nugent, J.4    Blundel, T.5
  • 20
    • 0000929505 scopus 로고
    • The hydrophobic moment detects periodicity in protein hydrophobicity
    • Eisenberg D. 1984. The hydrophobic moment detects periodicity in protein hydrophobicity. Proc Nat Acad Sci 81:140-144.
    • (1984) Proc Nat Acad Sci , vol.81 , pp. 140-144
    • Eisenberg, D.1
  • 21
    • 0030039837 scopus 로고    scopus 로고
    • Structure of a G-protein-coupling domain of a muscarinic receptor predicted by random saturation mutagenesis
    • Eubanks D, Burstein E, Spalding T, Bräuner-Osborne H, Brann M. 1996. Structure of a G-protein-coupling domain of a muscarinic receptor predicted by random saturation mutagenesis. J Biol Chem 271:3058-3065.
    • (1996) J Biol Chem , vol.271 , pp. 3058-3065
    • Eubanks, D.1    Burstein, E.2    Spalding, T.3    Bräuner-Osborne, H.4    Brann, M.5
  • 23
    • 0030588152 scopus 로고    scopus 로고
    • Sequence analysis in the olfactory receptor gene cluster on human chromosome 17: Recombinatorial events affecting receptor diversity
    • Glusman G, Clifton S, Roe R, Lancet D. 1996. Sequence analysis in the olfactory receptor gene cluster on human chromosome 17: Recombinatorial events affecting receptor diversity. Genomics 57:147-160.
    • (1996) Genomics , vol.57 , pp. 147-160
    • Glusman, G.1    Clifton, S.2    Roe, R.3    Lancet, D.4
  • 24
    • 0027422737 scopus 로고
    • Specificity of receptor-G protein interactions: Searching for the structure behind the signal
    • Hedin KE, Duerson K, Claphan DE. 1993. Specificity of receptor-G protein interactions: Searching for the structure behind the signal. Cell Signal 5:505-518.
    • (1993) Cell Signal , vol.5 , pp. 505-518
    • Hedin, K.E.1    Duerson, K.2    Claphan, D.E.3
  • 25
    • 0025292355 scopus 로고
    • Model for the structure of bacteriorhodopsin based on high-resolution electron cryo-microscopy
    • Henderson R, Baldwin JM, Ceska TA, Zemlin F, Beckmann E, Downing KH. 1990. Model for the structure of bacteriorhodopsin based on high-resolution electron cryo-microscopy. J Mol Biol 213:899-929.
    • (1990) J Mol Biol , vol.213 , pp. 899-929
    • Henderson, R.1    Baldwin, J.M.2    Ceska, T.A.3    Zemlin, F.4    Beckmann, E.5    Downing, K.H.6
  • 26
    • 0028829235 scopus 로고
    • Automated method for modeling seven-helix transmembranal receptors from experimental data
    • Herzyk P, Hubbard RE. 1995. Automated method for modeling seven-helix transmembranal receptors from experimental data. Biophysical J 69:2419-2442.
    • (1995) Biophysical J , vol.69 , pp. 2419-2442
    • Herzyk, P.1    Hubbard, R.E.2
  • 27
    • 0025881062 scopus 로고
    • Three-dimensional models of neurotransmitter G-binding protein-coupled receptors
    • Hibert MF, Trumpp-Kallmeyer S, Bruinvels A, Hoflack J. 1991. Three-dimensional models of neurotransmitter G-binding protein-coupled receptors. Mol Pharmacol 40:8-15.
    • (1991) Mol Pharmacol , vol.40 , pp. 8-15
    • Hibert, M.F.1    Trumpp-Kallmeyer, S.2    Bruinvels, A.3    Hoflack, J.4
  • 28
    • 0024475378 scopus 로고
    • Golf: An olfactory neuron specific-G-protein involved in odorant signal transduction
    • Jones DT, Reed RR. 1989. Golf: An olfactory neuron specific-G-protein involved in odorant signal transduction. Science 244:790-795.
    • (1989) Science , vol.244 , pp. 790-795
    • Jones, D.T.1    Reed, R.R.2
  • 29
    • 0029845242 scopus 로고    scopus 로고
    • A database of mutants and effects of site-directed mutagenesis experiments on G-protein-coupled receptors
    • Kristiansen K, Dahl SG, Edvardsen O. 1996. A database of mutants and effects of site-directed mutagenesis experiments on G-protein-coupled receptors. Proteins 26:81-94.
    • (1996) Proteins , vol.26 , pp. 81-94
    • Kristiansen, K.1    Dahl, S.G.2    Edvardsen, O.3
  • 30
    • 0022558387 scopus 로고
    • Vertebrate olfactory reception
    • Lancet D. 1986. Vertebrate olfactory reception. Ann Rev Neurosci 9:329-355.
    • (1986) Ann Rev Neurosci , vol.9 , pp. 329-355
    • Lancet, D.1
  • 32
    • 0001228323 scopus 로고
    • A common motif in G-protein-coupled seven transmembrane helix receptors
    • Oliveira L, Paiva ACM, Vriend G. 1993. A common motif in G-protein-coupled seven transmembrane helix receptors. J Comput Aided Mol Design 7:649-658.
    • (1993) J Comput Aided Mol Design , vol.7 , pp. 649-658
    • Oliveira, L.1    Paiva, A.C.M.2    Vriend, G.3
  • 33
    • 0346323716 scopus 로고
    • Olfactory GTP-binding protein: Signal-transducing polypeptide of vertebrate chemosensory neurons
    • Pace U, Lancet D. 1986. Olfactory GTP-binding protein: Signal-transducing polypeptide of vertebrate chemosensory neurons. Proc Natl Acad Sci USA 83:4947-4951.
    • (1986) Proc Natl Acad Sci USA , vol.83 , pp. 4947-4951
    • Pace, U.1    Lancet, D.2
  • 34
    • 0030864048 scopus 로고    scopus 로고
    • X-ray structure of bacteriorhodopsin at 2.5 Å from microcrystals grown in lipid cubic phases
    • Pebay-Peyroula E, Rummel G, Rosenbusch JP, Landau E. 1997. X-ray structure of bacteriorhodopsin at 2.5 Å from microcrystals grown in lipid cubic phases. Nature 277:1676-1681.
    • (1997) Nature , vol.277 , pp. 1676-1681
    • Pebay-Peyroula, E.1    Rummel, G.2    Rosenbusch, J.P.3    Landau, E.4
  • 35
    • 0030451549 scopus 로고    scopus 로고
    • Automated modeling of the transmembrane region of G-protein-coupled receptor by Swiss-model
    • Peitsch MC, Herzyk P, Wells TN, Hubbard RE. 1996. Automated modeling of the transmembrane region of G-protein-coupled receptor by Swiss-model. Receptors Channels 4:161-164.
    • (1996) Receptors Channels , vol.4 , pp. 161-164
    • Peitsch, M.C.1    Herzyk, P.2    Wells, T.N.3    Hubbard, R.E.4
  • 40
    • 0026030641 scopus 로고
    • Database of homology-derived protein structures and the structural meaning of sequence alignment
    • Sander C, Schneider R. 1991. Database of homology-derived protein structures and the structural meaning of sequence alignment Proteins 9:56-68.
    • (1991) Proteins , vol.9 , pp. 56-68
    • Sander, C.1    Schneider, R.2
  • 42
    • 0025008168 scopus 로고
    • Sequence logos: A new way to display consensus sequences
    • Schneider TD, Stephens RM. 1990. Sequence logos: A new way to display consensus sequences. Nucleic Acids Res 18:6097-6100.
    • (1990) Nucleic Acids Res , vol.18 , pp. 6097-6100
    • Schneider, T.D.1    Stephens, R.M.2
  • 43
    • 0029164276 scopus 로고
    • Potential ligand-binding residue in rat olfactory receptors identified by correlated mutation analysis
    • Singer M, Oliveira L, Vriend G, Shepherd GM. 1995a. Potential ligand-binding residue in rat olfactory receptors identified by correlated mutation analysis. Receptors Channels 3:89-95.
    • (1995) Receptors Channels , vol.3 , pp. 89-95
    • Singer, M.1    Oliveira, L.2    Vriend, G.3    Shepherd, G.M.4
  • 44
    • 0028243376 scopus 로고
    • Molecular modeling of ligand-receptor interactions in the OR5 olfactory receptor
    • Singer MS, Shepherd GM. 1994. Molecular modeling of ligand-receptor interactions in the OR5 olfactory receptor. Neuroreport 5:1297-3000.
    • (1994) Neuroreport , vol.5 , pp. 1297-3000
    • Singer, M.S.1    Shepherd, G.M.2
  • 46
    • 0030453906 scopus 로고    scopus 로고
    • Positive selection moments identify potential functional residues in human olfactory receptors
    • Singer MS, Weisinger-Lewin Y, Lancet D, Shepherd GM. 1996. Positive selection moments identify potential functional residues in human olfactory receptors. Receptors Channels 4:141-147.
    • (1996) Receptors Channels , vol.4 , pp. 141-147
    • Singer, M.S.1    Weisinger-Lewin, Y.2    Lancet, D.3    Shepherd, G.M.4
  • 47
    • 0024519931 scopus 로고
    • Structural basis of β-adrenergic receptor function
    • Strader CD, Sigal IS, Dixon RAF. 1989. Structural basis of β-adrenergic receptor function. FASEB 3:1825-1832.
    • (1989) FASEB , vol.3 , pp. 1825-1832
    • Strader, C.D.1    Sigal, I.S.2    Dixon, R.A.F.3
  • 49
    • 0028175436 scopus 로고
    • A method for α-helical integral membrane protein fold prediction
    • Taylor WR, Jones DT, Green NM. 1994. A method for α-helical integral membrane protein fold prediction. Proteins 18:281-294.
    • (1994) Proteins , vol.18 , pp. 281-294
    • Taylor, W.R.1    Jones, D.T.2    Green, N.M.3
  • 50
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties, and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ. 1994. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties, and weight matrix choice. Nucleic Acids Res 22:4673-4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 51
    • 0031081677 scopus 로고    scopus 로고
    • Specific repertoire of olfactory receptor genes in the male germ cells of several mammalian species
    • Vanderhaeghen P, Schurmans S, Vassart G, Parmentier M. 1997. Specific repertoire of olfactory receptor genes in the male germ cells of several mammalian species. Genomics 39:239-246.
    • (1997) Genomics , vol.39 , pp. 239-246
    • Vanderhaeghen, P.1    Schurmans, S.2    Vassart, G.3    Parmentier, M.4
  • 52
    • 0030760390 scopus 로고    scopus 로고
    • Functional expression of odorant receptors of the zebrafish Danio rerio and of the nematode C. elegans in HEK293 cells
    • Wellerdieck C, Oles M, Pott L, Korsching S, Gisselmann G, Hatt H. 1997. Functional expression of odorant receptors of the zebrafish Danio rerio and of the nematode C. elegans in HEK293 cells. Chem Senses 22:467-476.
    • (1997) Chem Senses , vol.22 , pp. 467-476
    • Wellerdieck, C.1    Oles, M.2    Pott, L.3    Korsching, S.4    Gisselmann, G.5    Hatt, H.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.