A cluster of genes encoding major isozymes of lignin peroxidase and manganese peroxidase from the white-rot fungus Trametes versicolor

Gene

Volumn 170, Issue 1, 1996, Pages 31-38

  Johansson, Tomas ^a   Nyman, Per Olof ^a  

^a LUND UNIVERSITY   (Sweden)

Author keywords

; metal response element; Basidiomycete; Coriolus versicolor; Gene cluster; Gene family; Heat shock element; Intron

Indexed keywords

ISOENZYME; LIGNIN PEROXIDASE; MANGANESE; PEROXIDASE;

ARTICLE; BASIDIOMYCETES; EXON; FUNGUS; GENE CLUSTER; GENE ISOLATION; GENE SEQUENCE; INTRON; NONHUMAN; PRIORITY JOURNAL;

EID: 0029878517     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/0378-1119(95)00846-2     Document Type: Article

References (35)

1. Ballance, D.J.: Transformation systems for filamentous fungi and an overview of fungal gene structure. In: Leong, S.A. and Berka, R.M (Eds.), Molecular Industrial Mycology: Systems and Applications for Filamentous Fungi. Marcel Dekker, New York, NY, 1991, pp. 1-30.
2. Black, A.K. and Reddy, C.A.: Cloning and characterization of a lignin peroxidase gene from the white-rot fungus Trametes versicolor. Biochem. Biophys. Res. Commun. 179 (1991) 428-435.
3. Brown, J.A., Alic, M. and Gold, M.H.: Manganese peroxidase gene transcription in Phanerochaete chrysosporium: activation by manganese. J. Bacteriol. 173 (1991) 4101-4106.
4. Culotta, V.C. and Hamer, D.H.: Fine mapping of a mouse metallothionein gene metal response element. Mol. Cell. Biol. 9 (1989) 1376-1380.
5. Dynan, W.S. and Tjian, R.: Control of eukaryotic messenger RNA synthesis by sequence-specific DNA-binding proteins. Nature 316 (1985) 774-778.
6. Eriksson, K.-E.L., Blanchette, R.A. and Ander, P.: Microbial and Enzymatic Degradation of Wood and Wood Components. Springer, Berlin, 1990, pp. 225-312.
7. Farrell, R.L., Murtagh, K.E., Tien, M., Mozuch, M.D. and Kirk, T.K.: Physical and enzymatic properties of lignin peroxidase isoenzymes from Phanerochaete chrysosporium. Enzyme Microb. Technol. 11 (1989) 322-328.
8. Genetics Computer Group: Program Manual for the Wisconsin Package, Version 8, Genetics Computer Group, 575 Science Drive, Madison, WI 53711, 1994.
9. Godfrey, B.J., Mayfield, M.B., Brown, J.A. and Gold, M.H.: Characterization of a gene encoding a manganese peroxidase from Phanerochaete chrysosporium. Gene 93 (1990) 119-124.
10. Gold, M.H. and Alic, M.: Molecular biology of the lignin-degrading basidiomycete Phanerochaete chrysosporium. Microbiol. Rev. 57 (1993) 605-622.
11. Hammel, K.E. and Moen, M.A.: Depolymerization of a synthetic lignin in vitro by lignin peroxidase. Enzyme Microb. Technol. 13 (1991) 15-18.
12. Johansson, T. and Nyman, P.O.: Isozymes of lignin peroxidase and manganese(II) peroxidase from the white-rot basidiomycete Trametes versicolor, I. Isolation of enzyme forms and characterization of physical and catalytic properties. Arch. Biochem. Biophys. 300 (1993) 49-56.
13. Johansson, T., Nyman, P.O., Stoffer, B. and Welinder, K.: Isozymes of the manganese (II)-dependent peroxidase in the white-rot basidiomycete Trametes versicolor. In: Kirk, T.K. and Chang, H.-M. (Eds.), Biotechnology in Pulp and Paper Industry: Applications and Fundamental Investigations. Butterworth-Heinemann, Boston (USA), 1990, pp. 429-438.
14. Johansson, T., Welinder, K.G. and Nyman, P.O.: Isozymes of lignin peroxidase and manganese(II) peroxidase from the white-rot basidiomycete Trametes versicolor, II. Partial sequences peptide maps and amino acid and carbohydrate compositions. Arch. Biochem. Biophys. 300 (1993) 57-62.
15. 2+ binding site of manganese peroxidase from homology modeling. In: Welinder, K.G., Rasmussen, S.K., Penel, C. and Greppin, H (Eds.), Plant Peroxidases: Biochemistry and Physiology. University of Copenhagen and University of Geneva, Geneva, 1993, pp. 31-34.
16. Jönsson, L., Karlsson, O., Lundquist, K. and Nyman, P.O.: Trametes versicolor ligninase: isozyme sequence homology and substrate specificity. FEBS Lett. 247 (1989) 143-146.
17. Jönsson, L. and Nyman, P.O.: Characterization of a lignin peroxidase gene from the white-rot fungus Trametes versicolor. Biochimie 74 (1992) 177-182.
18. Jönsson, L., Becker, H.G. and Nyman, P.O.: A novel type of peroxidase gene from the white-rot fungus Trametes versicolor. Biochim. Biophys. Acta 1207 (1994) 255-259.
19. Jönsson, L. and Nyman, P.O.: Tandem lignin peroxidase genes of the fungus Trametes versicolor. Biochim. Biophys. Acta 1218 (1994) 408-412.
20. Limongi, P., Kjalke, M., Vind, J., Tams, J.W., Johansson, T. and Welinder, K.G.: Disulfide bonds and glycosylation in fungal peroxidases. Eur. J. Biochem. 227 (1995) 270-276.
21. Niku-Paavola, M.L., Karhunen, E., Salola, P. and Raunio, V.: Ligninolytic enzymes of the white-rot fungus Phlebia radiata. Biochem. J. 254 (1988) 877-884.
22. Orth, A.B., Rzhetskaya, M., Cullen, D. and Tien, M.: Characterization of a cDNA encoding a manganese peroxidase from Phanerochaete chrysosporium: genomic organization of lignin and manganese peroxidase-encoding genes. Gene 148 (1994) 161-165.
23. Pease, E.A., Andrawis, A. and Tien, M.: Manganese-dependent peroxidase from Phanerochaete chrysosporium: primary structure deduced from complementary DNA sequence. J. Biol. Chem. 264 (1989) 13531-13535.
24. Poulos, T.L., Edwards, S.L., Wariishi, H. and Gold, M.H.: Crystallographic refinement of lignin peroxidase at 2 Å. J. Biol. Chem. 268 (1993) 4429-4440.
25. Prestridge, D.S.: Signal scan: a computer program that scans DNA sequences for eukaryotic transcriptional elements. Comput. Appl. Biosci. 7 (1991) 203-206.
26. Ritch, T.G. and Gold, M.H.: Characterization of a highly expressed lignin peroxidase-encoding gene from the basidiomycete Phanerochaete chrysosporium. Gene 118 (1992) 73-80.
27. Ritch, T.G., Nipper, V.J., Akileswaran, L., Smith, A.J., Pribnow, D.G. and Gold, M.H.: Lignin peroxidase from the basidiomycete Phanerochaete chrysosporium is synthesized as a preproenzyme. Gene 107 (1991) 119-126.
28. Sambrook, J., Fritsch, E.F. and Maniatis, T.: Molecular Cloning. A Laboratory Manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, 1989.
29. Sarkanen, S., Razal, R.A., Piccariello, T., Yamamoto, E. and Lewis, N.G.: Lignin peroxidase toward a clarification of its role in vivo. J. Biol. Chem. 266 (1991) 3636-3643.
30. Smith, T.L., Schalch, H., Gaskell, J., Covert, S. and Cullen, D.: Nucleotide sequence of a ligninase gene from Phanerochaete chrysosporium. Nucleic Acids Res. 16 (1988) 1219.
31. Stewart, P., Kersten, P., Vanden Wymelenberg, A., Gaskell, J. and Cullen, D.: Lignin peroxidase gene family of Phanerochaete chrysosporium: complex regulation by carbon and nitrogen limitation and identification of a second dimorphic chromosome. J. Bacteriol. 174 (1992) 5036-5042.
32. Sundaramoorthy, M., Kishi, K., Gold, M.H. and Poulos, T.L.: The crystal structure of manganese peroxidase from Phanerochaete chrysosporium at 2.06-Å resolution. J. Biol. Chem. 269 (1994) 32759-32767.
33. Wariishi, H., Valli, K. and Gold, M.H.: In vitro depolymerization of lignin by manganese peroxidase of Phanerochaete chrysosporium. Biochem. Biophys. Res. Commun. 176 (1991) 269-275.
34. Welinder, K.G.: Superfamily of plant, fungal and bacterial peroxidases. Curr. Opin. Struct. Biol. 2 (1992) 383-393.
35. Welinder, K.G. and Gajhede, M.: Structure and evolution of peroxidases. In: Welinder, K.G., Rasmussen, S.K., Penel, C. and Greppin, H (Eds.), Plant Peroxidases: Biochemistry and Physiology. University of Copenhagen and University of Geneva, Geneva, 1993, pp. 35-42.