Adaptive enhancement and kinetics of nucleotide excision repair in humans

Mutation Research - DNA Repair

Volumn 435, Issue 1, 1999, Pages 43-61

  Ye, Ning ^a   Bianchi, Martha S ^b   Bianchi, Nestor O ^b   Holmquist, Gerald P ^a  

^a CITY OF HOPE NATIONAL MEDICAL CENTER   (United States)

^b Instituto Multidisciplinario de Biologia Celular   (Argentina)

Author keywords

Adaptive response; Cyclopyrimidine dimer; DNA repair; UV

Indexed keywords

CYCLOBUTANE; DINUCLEOTIDE; MEPACRINE MUSTARD; PYRIMIDINE DIMER;

ANIMAL CELL; ARTICLE; CELL KINETICS; COMPETITIVE INHIBITION; CONTROLLED STUDY; DNA REPAIR; DNA TRANSCRIPTION; EXCISION REPAIR; FIBROBLAST; NONHUMAN; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; ULTRAVIOLET C RADIATION;

EID: 0032867492     PISSN: 09218777     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0921-8777(99)00022-1     Document Type: Article

References (59)

1. Samson L., Cairns J. A new pathway for DNA repair in Escherichia coli. Nature. 267:1977;281-283.
2. Saget B.M., Walker G.C. The Ada protein acts as both a positive and a negative modulator of Escherichia coli's response to methylating agents. Proc. Natl. Acad. Sci. U.S.A. 91:1994;9730-9734.
3. Olivieri G., Bodycote J., Wolff S. Adaptive response of human lymphocytes to low concentration of radioactive thymidine. Science. 223:1984;594-597.
4. Asad L.M.B.O., Asad N.R., Silva A.B., Felzenszwab I., Leitao A.C. Hydrogen peroxide induces protection against N-methyl-N′nitro-N-nitrosoguanidine (MNNG) effects in Escherichia coli. Mutat. Res. 383:1997;137-142.
5. Waters R., Zhang R., Jones N.J. Inducible removal of UV-induced pyrimidine dimers from transcriptionally active and inactive genes of Saccharomyces cerevisiae. Mol. Gen. Genet. 239:1993;28-32.
6. Scott A.D., Waters R. The Saccharomyces cerevisiae RAD7 and RAD16 genes are required for inducible excision of endonuclease III sensitive-sites, yet are not needed for the repair of these lesions following a single UV dose. Mutat. Res. DNA Repair. 383:1998;39-48.
7. L. Samson, J.L. Schwartz, The induction of resistance to alkylating damage in mammalian cells, in: C.W. Lawrence (Ed.), Molecular Mechanisms and Their Implications for Environmental Protection, Plenum, New York, 1983, pp. 291-309.
8. P. Lefebvre, F. Laval, Inducible repair in mammalian cells treated with alkylating agents, in: M.W. Lambert, J. Laval (Eds.), DNA Repair Mechanisms and Their Biological Implications in Mammalian Cells, Plenum, New York, 1989, pp. 141-148.
9. A. Abbondandolo, G. Aquilina, M. Bignami, S. Bonatti, R. Cosani, E. Dogliotti, G. Frosina, A. Zijno, The role of O6-alkylguanine in cell killing and sister chromatid exchange induced by alkylating agents, in: M.W. Lambert, J. Laval (Eds.), DNA Repair Mechanisms and Their Biological Implications in Mammalian Cells, Plenum, New York, 1989.
10. McKay B.C., Rainbow A.J. Heat-shock enhanced reactivation of a UV-damaged reporter gene in human cells involves the transcription coupled DNA repair pathway. Mutat. Res. 363:1996;125-135.
11. McKay B.C., Winrow C., Rainbow A.J. Capacity of UV-irradiated human fibroblasts to support adenovirus DNA synthesis correlates with transcription-coupled repair and is reduced in SV40-transformed cells and cells expressing mutant p53. Photochem. Photobiol. 66:1997;659-664.
12. M.A. Francis, A.J. Rainbow, UV-enhanced reactivation of a UV-damaged reporter gene suggests transcription-coupled repair is UV-inducible in human cells, Carcinogenesis (1998) (in press).
13. Gillardon F., Eschenfelder C., Uhlmann E., Hartschuh W., Zimmermann M. Differential regulation of c-fos, fosB, c-jun, junB, bcl-2, and bax expression in rat skin following single or chronic ultraviolet irradiation and in vivo modulation by antisense oligodeoxynucleotide superfusion. Oncogene. 9:1994;3219-3225.
14. Blattner C., Knebel A., Radler-Pohl A., Sachsenmaier C., Herrlich P.R.H.J. DNA damaging agents and growth factors induce changes in the program of expressed gene products through common routs. Environ. Mol. Mutagen. 24:1994;3-10.
15. Fornace A.J. Jr. Mammalian genes induced by radiation; activation of genes associated with growth control. Annu. Rev. Genet. 26:1992;507-526.
16. Smith M.L., Chen I.-T., Zhan Q., Bae I., Chen C.-Y., Gilmer T.M., Kastan M.B., O'Connor P.M., Fornace A.J. Jr. Interaction of the p53-regulated protein Gadd45 with proliferating cell nuclear antigen. Science. 266:1994;1376-1380.
17. Mellon I., Spivak G., Hanawalt P.C. Selective removal of transcription-blocking DNA damage from the transcribed strand of the mammalian DHFR gene. Cell. 51:1987;241-249.
18. Ford J.M., Hanawalt P.C. Expression of wild-type p53 is required for efficient global genomic nucleotide excision repair in UV-irradiated human fibroblasts. J. Biol. Chem. 272:1997;28073-28080.
19. Ford J.M., Baron E.L., Hanawalt P.C. Human fibroblasts expressing the human papillomavirus E6 gene are deficient in global genomic nucleotide excision repair and sensitive to ultraviolet irradiation. Cancer Res. 58:1998;599-603.
20. McKay B.C., Francis M.A., Rainbow A.J. Wildtype p53 is required for heat shock and ultraviolet light enhanced repair of a UV-damaged reporter gene. Carcinogenesis. 18:1997;245-249.
21. Reardon J.T., Nichols A.F., Keeney S., Smith C.A., Taylor J.S., Linn S., Sancar A. Comparative analysis of binding of human damaged DNA-binding protein implicated in xeroderma pigmentosum. J. Biol. Chem. 268:1993;21301-21308.
22. Gunz D., Hess M.T., Naegeli H. Recognition of DNA adducts by human nucleotide excision repair. Evidence for a thermodynamic probing mechanism. J. Biol. Chem. 271:1996;25089-25098.
23. Hess M.T., Gunz D., Naegeli H. A repair competition assay to assess recognition by human nucleotide excision repair. Nucleic Acids Res. 24:1996;824-828.
24. Huang J.-C., Hsu D.S., Kazantsev A., Sancar A. Substrate spectrum of human excinuclease: repair of abasic sites, methylated bases, mismatches, and bulky adducts. Proc. Natl. Acad. Sci. U.S.A. 91:1994;12213-12217.
25. Koehler D.R., Courcelle J., Hanawalt P.C. Kinetics of pyrimidine(6-4)pyrimidone photoproduct repair in Escherichia coli. J. Bacteriol. 178:1996;1347-1350.
26. Hess M.T., Gunz D., Luneva N., Geacintov N.E., Naegeli H. Base pair conformation-dependent excision of benzo[a]pyrene diol epoxide-guanine adducts by human nucleotide excision repair enzymes. Mol. Cell. Biol. 17:1997;7069-7076.
27. Pfeifer G.P., Drouin R., Riggs A.D., Holmquist G.P. In vivo mapping of a DNA adduct at nucleotide resolution: detection of pyrimidine (6-4) pyrimidone photoproducts by ligation-mediated polymerase chain reaction. Proc. Natl. Acad. Sci. U.S.A. 88:1991;1374-1378.
28. Pfeifer G.P., Drouin R., Riggs A.D., Holmquist G.P. Binding of transcription factors creates hot spots for UV photoproducts in vivo. Mol. Cell. Biol. 12:1992;1798-1804.
29. Gao S., Drouin R., Holmquist G.P. DNA repair rates mapped along a human gene at nucleotide resolution. Science. 263:1994;1438-1440.
30. Tornaletti S., Pfeifer G.P. Slow repair of pyrimidine dimers at p53 mutation hot spots in skin cancer. Science. 263:1994;1436-1438.
31. Kaufmann W.K., Wilson S.J. DNA repair endonuclease activity during synchronous growth of diploid human fibroblasts. Mutat. Res. 236:1990;107-117.
32. Holmquist G.P., Gao S. Somatic mutation theory, high resolution DNA repair kinetics, and the molecular epidemiology of p53 mutations. Mutat. Res. 386:1997;69-101.
33. Roza L., Vermeulen W., Bergen J.B.A., Eker A.P.M., Jaspers N.G.J., Lohman P.H.M., Hoeijmakers J.H.J. Effects of microinjected photoreactivating enzyme on thymine dimer removal and DNA repair synthesis in normal human and xeroderma pigmentosum fibroblasts. Cancer Res. 50:1990;1905-1910.
34. Lloyd R.S. Base excision repair of cyclobutane pyrimidine dimers. Mutat. Res. DNA Repair. 408:1998;159-170.
35. Denissenko M.F., Pao A., Tang M., Pfeifer G.P. Preferential formation of benzo[a]pyrene adducts at lung cancer mutational hotspots in p53. Science. 274:1996;430-432.
36. Tornaletti S., Rozek D., Pfeifer G.P. The distribution of UV photoproducts along the human p53 gene and its relation to mutations in skin cancer. Oncogene. 8:1993;2051-2057.
37. R. Drouin, S. Gao, G.P. Holmquist, Agarose gel electrophoresis for DNA damage analysis, in: G.P. Pfeifer (Ed.), Technologies for Detection of DNA Damage and Mutations, Plenum, New York, 1996, pp. 37-43.
38. 2/Cu(II)/Ascorbate-induced DNA damage at nucleotide resolution in human genomic DNA by ligation-mediated PCR. J. Biol. Chem. 270:1995;17633-17639.
39. van Hoffen A., Venema J., Meschini R., van Zeeland A.A., Mullenders L.H.F. Transcription-coupled repair removes both cyclobutane pyrimidine dimers and 6-4 photoproducts with equal efficiency and in a sequential way from transcribed DNA in xeroderma pigmentosum group C fibroblasts. EMBO J. 14:1995;360-367.
40. van Oosterwijk M.F., Filon R., Kalle W.H., Mullenders L.H., van Zeeland A.A. The sensitivity of human fibroblasts to N-acetoxy-2-acetylaminofluorene is determined by the extent of transcription-coupled repair, and/or their capability to counteract RNA synthesis inhibition. Nucleic Acids Res. 24:1996;4653-4659.
41. van Oosterwijk M.F., Filon R., de Groot A.J., van Zeeland A.A., Mullenders L.H. Lack of transcription-coupled repair of acetylaminofluorene DNA adducts in human fibroblasts contrasts their efficient inhibition of transcription. J. Biol. Chem. 273:1998;13599-13604.
42. van Oosterwijk M.F., Versteeg A., Filon R., van Zeeland A.A., Mullenders L.H. The sensitivity of Cockayne's syndrome cells to DNA-damaging agents is not due to defective transcription-coupled repair of active genes. Mol. Cell. Biol. 16:1996;4436-4444.
43. You Z., Feaver W.J., Friedberg E.C. Yeast RNA polymerase II transcription in vitro is inhibited in the presence of nucleotide excision repair: complementation of inhibition by holo-TFIIH and requirement for RAD26. Mol. Cell. Biol. 18:1998;2668-2676.
44. Mullenders L.H.F. Transcription response and nucleotide excision repair. Mutat. Res. DNA Repair. 409:1998;59-64.
45. L.H.F. Mullenders, A.A. van Zeeland, A.T. Natarajan, The localization of ultraviolet-induced excision repair in the nucleus and the distribution of repair events in higher order chromatin loops in mammalian cells, J. Cell Sci. (Suppl. 6) (1987) 243-262.
46. Balajee A.S., May A., Bohr V.A. Fine structural analysis of DNA repair in mammalian cells. Mutat. Res. 404:1998;3-11.
47. Mellon I., Bohr V.A., Smith C.A., Hanawalt P.C. Preferential DNA repair of an active gene in human cells. Proc. Natl. Acad. Sci. U.S.A. 83:1986;8822-8878.
48. Schimke R.T., Sherwood S.W., Hill A.B., Johnston R.N. Overreplication and recombination of DNA in higher eukaryotes: potential consequences and biological implications. Proc. Natl. Acad. Sci. U.S.A. 83:1986;2157-2161.
49. Bohr V.A., Smith C.A., Okumoto D.S., Hanawalt P.C. DNA repair in an active gene: removal of pyrimidine dimers from the DHFR gene of CHO cells is much more efficient than in the genome overall. Cell. 40:1985;359-369.
50. Driggers W.J., Holmquist G.P., LeDoux S.P., Wilson G.L. Mapping frequencies of endogenous oxidative damage and the kinetic response to oxidative stress in a region of rat mtDNA. Nucleic Acids Res. 25:1997;4362-4369.
51. Li Q., Gardner K., Zhang L., Tsang B., Bostick-Bruton F., Reed E. Cisplatin induction of ERCC-1 mRNA expression in A2760/CP70 human ovarian cancer cells. J. Biol. Chem. 273:1998;23419-23425.
52. Mitchell D.L., Hartman P.S. The regulation of DNA repair during development. BioEssays. 12:1990;74-78.
53. Rasko I., Georgieva M., Farkas G., Santha M., Coates J., Burg K., Mitchell D.L., Johnson R.T. New patterns of bulk DNA repair in ultraviolet irradiated mouse embryo carcinoma cells following differentiation. Somatic Cell Mol. Genet. 19:1993;245-255.
54. Krokan H.E., Standal R., Slupphaug G. DNA glycosylases in the base excision repair of DNA. Biochem. J. 325:1997;1-16.
55. Ye N., Holmquist G.P., O'Connor T.R. Heterogeneous repair of N-methylpurines at the nucleotide level in normal human cells. J. Mol. Biol. 284:1998;269-285.
56. D.M. DeMarini, Mutation spectra of complex mixtures, Mutat. Res. (1998) (in press).
57. Maxam A.M., Gilbert W. Sequencing end-labeled DNA with base-specific chemical cleavages. Methods Enzymol. 65:1980;499-560.
58. R.R. Sokal, F.J. Rohlf, Biometry, Freeman, San Francisco, 1969, p. 527.
59. Mitchell D.L., Nairn R.S. The biology of the (6-4) photoproducts. Photochem. Photobiol. 49:1989;805-819.