Capillary electrophoresis of DNA in the 20-500 bp range: Recent developments

Journal of Biochemical and Biophysical Methods

Volumn 41, Issue 2-3, 1999, Pages 75-90

  Righetti, Pier Giorgio ^a   Gelfi, Cecilia ^b  

^a UNIVERSITY OF VERONA   (Italy)

^b CNR   (Italy)

Author keywords

Capillary electrophoresis; DNA; Isoelectric buffers; Oligonucleotides

Indexed keywords

ACETIC ACID; ANTISENSE OLIGONUCLEOTIDE; BUFFER; DNA; DNA FRAGMENT; DOUBLE STRANDED DNA; EDETIC ACID; HISTIDINE; POLYMER; SINGLE STRANDED DNA; TROMETAMOL;

ANALYTIC METHOD; CAPILLARY ELECTROPHORESIS; CAPILLARY ZONE ELECTROPHORESIS; DNA DETERMINATION; ELECTRIC POTENTIAL; ELECTROPHORETIC MOBILITY; ISOELECTRIC POINT; LIQUID; PH; PRIORITY JOURNAL; REVIEW;

EID: 0032759395     PISSN: 0165022X     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0165-022X(99)00039-1     Document Type: Article

References (61)

1. Walker J.M. Methods in molecular biology. New nucleic acid techniques. Vol. 4:1988;Humana Press, Clifton.
2. Mullis K.B., Ferrè F., Gibbs R.A. The polymerase chain reaction. 1994;Birkhauser, Boston, MA.
3. Olson M.V. The human genome project. Proc Natl Acad Sci USA. 90:1993;4338-4342.
4. Krstulovic AM, Guest editor. Capillary electrophoresis in the life sciences. Special issue of J Chromatogr B 1997;697:1-290.
5. Landers JP, Guest editor. Capillary electrophoresis in the clinical sciences. Special issue of Electrophoresis 1997;18:1709-1905.
6. El Rassi Z, Guest editor. Capillary electrophoresis and electrochromatography reviews. Special issue of Electrophoresis 1997;18:2123-2501.
7. Heller C. Analysis of nucleic acids by capillary electrophoresis. 1997;Vieweg, Braunschweig/Wiesbaden.
8. McCord BR, Guest editor. Capillary electrophoresis in forensic science. Special issue of Electrophoresis 1998;19:1-126.
9. Bonn G, Gerstner J, Oefner P, Guest editors. Nucleic acid separations and analysis. Special issue of J Chromatogr A 1998;806:1-236.
10. Yeung E.S., Li Q. DNA sequencing by multiplexed capillary electrophoresis. Khaledi M.G. High performance capillary electrophoresis - theory, techniques and applications. 1998;767-789 Wiley-Interscience, New York.
11. Righetti P.G., Gelfi C. Righetti P.G. Capillary electrophoresis in analytical biotechnology. 1996;431-476 CRC Press, Boca Raton, FL.
12. Sunada W.M., Blanch H.W. Polymeric separation media for capillary electrophoresis of nucleic acids. Electrophoresis. 18:1997;2243-2254.
13. Viovy J.L., Heller C. Righetti P.G. Capillary electrophoresis in analytical biotechnology. 1996;477-508 CRC Press, Boca Raton, FL.
14. Gelfi C., Simò-Alfonso E., Sebastiano R., Citterio A., Righetti P.G. Novel acrylamido monomers with higher hydrophilicity and improved hydrolytic stability. III: DNA separations by capillary electrophoresis in poly(N-acryloyl amino propanol). Electrophoresis. 17:1996;738-743.
15. Lindberg P., Righetti P.G., Gelfi C., Roeraade J. Electrophoresis of DNA sequencing fragments at elevated temperature in capillaries filled with poly(N-acryloyl amino propanol) gels. Electrophoresis. 18:1997;2909-2914.
16. Wu C., Liu T., Chu B. Viscosity-adjustable block copolymer for DNA separation by capillary electrophoresis. Electrophoresis. 19:1998;231-241.
17. Rill R.L., Locke B.R., Liu Y., Van Winkle D.H. Electrophoresis in lyotropic polymer liquid crystals. Proc Natl Acad Sci USA. 95:1998;1534-1539.
18. Sassi A.P., Barron A., Alonso-Amigo M.G., Hion D.Y., Yu J.S., Soane D.S., Hooper H.H. Electrophoresis of DNA in novel thermoreversible matrices. Electrophoresis. 17:1996;1460-1469.
19. Menchen S., Johnson B., Winnik M.A., Xu B. Flowable networks as DNA sequencing media in capillary columns. Electrophoresis. 17:1996;1451-1459.
20. Madabhushi R.S., Vainer M., Dolnik V., Enad S., Barker D.L., Harris D.W., Mansfield E.S. Versatile low-viscosity sieving matrices for non-denaturing DNA separations using capillary array electrophoresis. Electrophoresis. 18:1997;104-111.
21. Goetzinger W., Kotler L., Carrilho E., Ruiz-Martinez M.C., Salas-Solano O., Karger B.L. Characterization of high molecular mass linear polyacrylamide powder prepared by emulsion polymerization as a replaceable polymer matrix for DNA sequencing by capillary electrophoresis. Electrophoresis. 19:1998;242-248.
22. Sils B.A., Anderson D.E., Buchanan N.S., Warder M.F. Characterization of composite agarose/hydroxyethylcellulose matrices for separation of DNA fragments by capillary electrophoresis. Electrophoresis. 17:1997;1980-1989.
23. Palm A., Hiertén S. The resolution of DNA fragments in capillary electrophoresis in replaceable agarose gels. J Cap Electrophoresis. 3:1996;173-179.
24. Buenz A.P., Barron A.E., Prausnitz J.M., Blanch H.W. Capillary electrophoretic separation of DNA restriction fragments in mixtures of low- and high-molecular mass hydroxyethyl cellulose. Ind Eng Chem Res. 35:1996;2900-2908.
25. Heiger D.N., Cohen A.S., Karger B.L. Separation of DNA restriction fragments by capillary electrophoresis with low and zero cross-linked polyacrylamide using continuous and pulsed electric fields. J Chromatogr. 516:1990;33-47.
26. Demana T., Lanan M., Morris M.D. Improved separation of nucleic acids with analyte velocity modulation capillary electrophoresis. Anal Chem. 63:1991;2795-2797.
27. Heller C., Pakleza C., Viovy J.L. DNA separation with field inversion capillary electrophoresis. Electrophoresis. 16:1995;1423-1428.
28. Sudor J., Novotny M.V. Pulsed-field capillary electrophoresis of large DNA. Heller C. Analysis of nucleic acids by capillary electrophoresis. 1997;218-235 Vieweg, Braunschweig/Wiesbaden.
29. Righetti P.G., Gelfi C. Mutational analysis with capillary electrophoresis. Heller C. Analysis of nucleic acids by capillary zone electrophoresis. 1977;255-273 Vieweg Press, Braunschweig/Wiesbaden.
30. Righetti P.G., Gelfi C. Recent advances in capillary electrophoresis of oligonucleotides and DNA fragments in poly(N-substituted acrylamides). Anal Biochem. 244:1997;95-207.
31. Righetti P.G., Gelfi C. Recent advances in capillary electrophoresis of DNA fragments and PCR products. Biochem Soc Trans. 25:1997;267-273.
32. Righetti P.G., Gelfi C. Analysis of clinically-relevant, diagnostic DNA by capillary electrophoresis and double-gradient gel electrophoresis. J Chromatogr A. 806:1998;97-112.
33. Righetti P.G., Gelfi C. Recent advances in capillary zone electrophoresis of DNA. Forensic Sci Int. 92:1998;239-250.
34. Righetti P.G., Gelfi C. Capillary electrophoresis of DNA for molecular diagnostics. Electrophoresis. 18:1997;1709-1714.
35. Baba Y. Analysis of disease-causing genes and DNA-based drugs by capillary electrophoresis. Towards DNA diagnosis and gene therapy for human diseases. J Chromatogr B. 687:1996;271-302.
36. Lehmann R., Liebich H.M., Voelter W. Application of capillary electrophoresis in clinical chemistry. Development from preliminary trials to routine analysis. J Cap Electrophoresis. 3:1996;89-110.
37. Isenberg A.R., McCord B.R., Koons B.W., Budowle B., Allen R.O. DNA typing of a polymerase chain reaction amplified D1S80/amelogenin multiplex using capillary electrophoresis and a mixed entangled polymer matrix. Electrophoresis. 17:1996;1505-1511.
38. Mansfield E.S., Vainer M., Enad S., Barker D.L., Harris D., Rappaport E., Fortina P. Sensitivity, reproducibility and accuracy in short tandem repeat genotyping using capillary array electrophoresis. Genome Res. 6:1996;893-903.
39. Zhang N., Yeung E.S. Simultaneous separation and genetic typing of four short tandem repeat loci by capillary electrophoresis. J Chromatogr A. 768:1997;135-141.
40. Pouchkarev V.P., Shved E.F., Novikov P.I. Sex determination of forensic samples by PCR reaction of the amelogenin gene and analysis by capillary electrophoresis with polymer matrix. Electrophoresis. 19:1998;76-79.
41. Mitchell J.W., Walsh D. Analysis of the D1S80 locus by capillary electrophoresis. Electrophoresis. 19:1998;80-85.
42. Marchi E., Pasacreta R.J. Capillary electrophoresis in court. The landmark decision of the People of Tennessee versus Ware. J Cap Electrophoresis. 4:1997;145-156.
43. Kuffner C.A. Jr., Marchi E., Morgado J.M., Rubio C.R. Capillary electrophoresis and Daubert: time for admission. Anal Chem. 68:1996;241A-246A.
44. Wagner R.W. Gene inhibition using antisense oligonucleotides. Nature. 372:1994;333-335.
45. Cohen J.S., Hogan M.E. The new genetic medicines. Sci Am. December:1994;55-60.
46. Vinayak R. Chemical Synthesis, analysis and purification of oligoribonucleotides. Methods Comp Methods Enzymol. 5:1993;7-18.
47. Bourque A.J., Cohen A.S. Quantitative analysis of phosphorothioate oligonucletoides in biological fluids using injection fast anion-exchange chromatography and capillary gel electrophoresis. J Chromatogr B. 662:1994;343-349.
48. Gelfi C., Perego M., Morelli S., Nicolin A., Righetti P.G. Analysis of antisense oligonucleotides by capillary electrophoresis, gel-slab electrophoresis and HPLC: a comparison. Antisense Nucl Acid Drug Develop. 6:1996;47-53.
49. Gelfi C., Perego M., Righetti P.G. Capillary electrophoresis of oligonucleotides in sieving liquid polymers in isoelectric buffers. Electrophoresis. 17:1996;1470-1475.
50. Stoyanov A.V., Gelfi C., Righetti P.G. Capillary zone electrophoresis of oligonucleotides in isoelectric buffers and against a stationary pH gradient. Electrophoresis. 18:1997;717-723.
51. Stoyanov A.V., Righetti P.G. Fundamental properties of isoelectric buffers for capillary zone electrophoresis. J Chromatogr A. 790:1997;169-176.
52. Righetti P.G., Gelfi C., Perego M., Stoyanov A.V., Bossi A. Capillary zone electrophoresis of oligonucleotides and peptides in isoelectric buffers: theory and methodology. Electrophoresis. 18:1997;2145-2153.
53. Bossi A., Righetti P.G. Generation of peptide maps by capillary zone electrophoresis in isoelectric iminodiacetic acid. Electrophoresis. 18:1997;2012-2018.
54. Perego M., Gelfi C., Stoyanov A.V., Righetti P.G. Separation of oligonucleotides of identical size, but different base composition, by free zone capillary electrophoresis in strongly acidic, isoelectric buffers. Electrophoresis. 18:1997;2915-2920.
55. Overbeek J.T.H.G. Wiersema P.H. The interpretation of electrophoretic mobilities. Bier M. Electrophoresis - theory, methods and applications. 1967;1-52 Academic Press, New York.
56. Stellwagen N., Gelfi C., Righetti P.G. The free solution mobility of DNA. Biopolymers. 42:1997;687-703.
57. Gelfi C., Perego M., Righetti P.G., Cainarca S., Firpo S., Ferrari M., Cremonesi L. Rapid capillary zone electrophoresis in isoelectric histidine buffer: high resolution of the poly-T tract allelic variants in intron 8 of the CFTR gene. Clin. Chem. 44:1998;906-913.
58. Gelfi C., Mauri D., Stellwagen N.C., Perduca M., Righetti P.G. Capillary zone electrophoresis of ds-DNA in isoelectric buffers: effect of addition of competing, non-amphoteric ions. Electrophoresis. 19:1998;1704-1710.
59. Stellwagen N.C., Gelfi C., Righetti P.G. DNA-histidine complexes in isoelectric histidine buffers. J. Chromatogr. A. 838:1999;179-189.
60. Gebauer P., Desiderio C., Fanali S., Bocek P. Schizophrenic behaviour of zones in capillary zone electrophoresis: explanation of an old problem. Electrophoresis. 19:1998;701-706.
61. Righetti P.G. Capillary electrophoresis in analytical biotechnology. 1996;CRC Press, Boca Raton, FL.