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Volumn 1489, Issue 2-3, 1999, Pages 233-248

The influence of the exocyclic pyrimidine 5-methyl group on DNAse I cleavage and sequence recognition by drugs

Author keywords

5 Methyl cytosine; DACA; Daunomycin; DNAse I; Methyl group; Sequence recognition; SN16713; Uridine

Indexed keywords

5 METHYLCYTOSINE; 9 [[2 METHOXY 4(METHYLSULFONYLAMINO)PHENYL]AMINO] N [2 (DIMETHYLAMINO)ETHYL]ACRIDINE 4 CARBOXAMIDE; CYTIDINE; CYTOSINE; DAUNORUBICIN; DEOXYRIBONUCLEASE I; DNA; DNA FRAGMENT; INTERCALATING AGENT; METHYL GROUP; N (2 DIMETHYLAMINOETHYL) 4 ACRIDINECARBOXAMIDE; NUCLEOTIDE; PYRIMIDINE; SN 16713; THYMIDINE; UNCLASSIFIED DRUG; URIDINE;

EID: 0032737526     PISSN: 01674781     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0167-4781(99)00188-8     Document Type: Article
Times cited : (4)

References (36)
  • 1
    • 0024281345 scopus 로고
    • DNA methylation and gene activity
    • Cedar H. DNA methylation and gene activity. Cell. 53:1988;3-4.
    • (1988) Cell , vol.53 , pp. 3-4
    • Cedar, H.1
  • 2
    • 0027535235 scopus 로고
    • Effects of DNA methylation on DNA-binding proteins and gene expression
    • Tate P.H., Bird A.P. Effects of DNA methylation on DNA-binding proteins and gene expression. Curr. Opin. Genet. Dev. 3:1993;226-231.
    • (1993) Curr. Opin. Genet. Dev. , vol.3 , pp. 226-231
    • Tate, P.H.1    Bird, A.P.2
  • 4
    • 0023513912 scopus 로고
    • The structure of an oligo(dA).oligo(dT) tract and its biological implications
    • Nelson H.C., Finch J.T., Luisi B.F., Klug A. The structure of an oligo(dA).oligo(dT) tract and its biological implications. Nature. 330:1987;221-226.
    • (1987) Nature , vol.330 , pp. 221-226
    • Nelson, H.C.1    Finch, J.T.2    Luisi, B.F.3    Klug, A.4
  • 5
    • 0028904989 scopus 로고
    • Origins of the large differences in stability of DNA and RNA helices: C-5 methyl and 2′-hydroxyl effects
    • Wang S., Kool E.T. Origins of the large differences in stability of DNA and RNA helices: C-5 methyl and 2′-hydroxyl effects. Biochemistry. 34:1995;4125-4132.
    • (1995) Biochemistry , vol.34 , pp. 4125-4132
    • Wang, S.1    Kool, E.T.2
  • 6
    • 0032079703 scopus 로고    scopus 로고
    • Hydration and recognition of methylated CpG steps in DNA
    • Mayer-Jung C., Moras D., Timsit Y. Hydration and recognition of methylated CpG steps in DNA. EMBO J. 17:1998;2709-2718.
    • (1998) EMBO J. , vol.17 , pp. 2709-2718
    • Mayer-Jung, C.1    Moras, D.2    Timsit, Y.3
  • 7
    • 0030450388 scopus 로고    scopus 로고
    • PCR-based development of DNA substrates containing modified bases: An efficient system for investigating the role of the exocyclic groups in chemical and structural recognition by minor groove binding drugs and proteins
    • Bailly C., Payet D., Travers A.A., Waring M.J. PCR-based development of DNA substrates containing modified bases: an efficient system for investigating the role of the exocyclic groups in chemical and structural recognition by minor groove binding drugs and proteins. Proc. Natl. Acad. Sci. USA. 93:1996;13623-13628.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 13623-13628
    • Bailly, C.1    Payet, D.2    Travers, A.A.3    Waring, M.J.4
  • 8
    • 0032555263 scopus 로고    scopus 로고
    • The exocyclic groups of DNA modulate the affinity and positioning of the histone octamer
    • Buttinelli M., Minnock A., Panetta G., Waring M., Travers A. The exocyclic groups of DNA modulate the affinity and positioning of the histone octamer. Proc. Natl. Acad. Sci. USA. 95:1998;8544-8549.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 8544-8549
    • Buttinelli, M.1    Minnock, A.2    Panetta, G.3    Waring, M.4    Travers, A.5
  • 9
    • 0033588255 scopus 로고    scopus 로고
    • Demethylation of thymines affects DNA cleavage by endonucleases but not sequence recognition by drugs
    • Bailly C., Crow S., Minnock A., Waring M.J. Demethylation of thymines affects DNA cleavage by endonucleases but not sequence recognition by drugs. J. Mol. Biol. 291:1999;561-573.
    • (1999) J. Mol. Biol. , vol.291 , pp. 561-573
    • Bailly, C.1    Crow, S.2    Minnock, A.3    Waring, M.J.4
  • 10
    • 0011166658 scopus 로고
    • Anthracycline Anitbiotics: New Analogues, Methods of Delivery, and Mechanisms of Action
    • in W. Priebe (Ed.), American Chemical Society, Washington, DC
    • J.B. Chaires, in W. Priebe (Ed.), Anthracycline Anitbiotics: New Analogues, Methods of Delivery, and Mechanisms of Action, ACS Symposium Series 574, American Chemical Society, Washington, DC, 1995, pp. 155-167.
    • (1995) ACS Symposium Series , vol.574 , pp. 155-167
    • Chaires, J.B.1
  • 11
    • 0026513412 scopus 로고
    • Sequence specificity of the binding of 9-aminoacridine- And amsacrine-4-carboxamides to DNA studied by DNase I footprinting
    • Bailly C., Denny W.A., Mellor L.E., Wakelin L.P., Waring M.J. Sequence specificity of the binding of 9-aminoacridine- and amsacrine-4-carboxamides to DNA studied by DNase I footprinting. Biochemistry. 31:1992;3514-3524.
    • (1992) Biochemistry , vol.31 , pp. 3514-3524
    • Bailly, C.1    Denny, W.A.2    Mellor, L.E.3    Wakelin, L.P.4    Waring, M.J.5
  • 12
    • 0030472756 scopus 로고    scopus 로고
    • Molecular origins of selectivity in the interaction of amsacrine-4-carboxamide with GC-rich sequences in DNA
    • Bailly C., Denny W.A., Waring M.J. Molecular origins of selectivity in the interaction of amsacrine-4-carboxamide with GC-rich sequences in DNA. Anticancer Drug Des. 11:1996;611-624.
    • (1996) Anticancer Drug Des. , vol.11 , pp. 611-624
    • Bailly, C.1    Denny, W.A.2    Waring, M.J.3
  • 13
    • 0025336941 scopus 로고
    • Kinetic and equilibrium binding studies of amsacrine-4-carboxamides: A class of asymmetrical DNA-intercalating agents which bind by threading through the DNA helix
    • Wakelin L.P., Chetcuti P., Denny W.A. Kinetic and equilibrium binding studies of amsacrine-4-carboxamides: a class of asymmetrical DNA-intercalating agents which bind by threading through the DNA helix. J. Med. Chem. 33:1990;2039-2044.
    • (1990) J. Med. Chem. , vol.33 , pp. 2039-2044
    • Wakelin, L.P.1    Chetcuti, P.2    Denny, W.A.3
  • 15
    • 0022053771 scopus 로고
    • Negative supercoiling induces spontaneous unwinding of a bacterial promoter
    • Drew H.R., Weeks J.R., Travers A.A. Negative supercoiling induces spontaneous unwinding of a bacterial promoter. EMBO J. 4:1985;1025-1032.
    • (1985) EMBO J. , vol.4 , pp. 1025-1032
    • Drew, H.R.1    Weeks, J.R.2    Travers, A.A.3
  • 17
    • 0029007481 scopus 로고
    • The influence of the 2-amino group of guanine on DNA conformation. Uranyl and DNase I probing of inosine/diaminopurine substituted DNA
    • Bailly C., Møllegaard N.E., Nielsen P.E., Waring M.J. The influence of the 2-amino group of guanine on DNA conformation. Uranyl and DNase I probing of inosine/diaminopurine substituted DNA. EMBO J. 14:1995;2121-2131.
    • (1995) EMBO J. , vol.14 , pp. 2121-2131
    • Bailly, C.1    Møllegaard, N.E.2    Nielsen, P.E.3    Waring, M.J.4
  • 18
    • 0025800997 scopus 로고
    • A biochemical perspective of the polymerase chain reaction
    • Bloch W. A biochemical perspective of the polymerase chain reaction. Biochemistry. 30:1991;2735-2747.
    • (1991) Biochemistry , vol.30 , pp. 2735-2747
    • Bloch, W.1
  • 19
    • 0021770664 scopus 로고
    • Sequence-specific binding of echinomycin to DNA: Evidence for conformational changes affecting flanking sequences
    • Low C.M., Drew H.R., Waring M.J. Sequence-specific binding of echinomycin to DNA: evidence for conformational changes affecting flanking sequences. Nucleic Acids Res. 12:1984;4865-4879.
    • (1984) Nucleic Acids Res. , vol.12 , pp. 4865-4879
    • Low, C.M.1    Drew, H.R.2    Waring, M.J.3
  • 20
    • 0023567225 scopus 로고
    • Alterations in DNA helix stability due to base modifications can be evaluated using denaturing gradient gel electrophoresis
    • Collins M., Myers R.M. Alterations in DNA helix stability due to base modifications can be evaluated using denaturing gradient gel electrophoresis. J. Mol. Biol. 198:1987;737-744.
    • (1987) J. Mol. Biol. , vol.198 , pp. 737-744
    • Collins, M.1    Myers, R.M.2
  • 21
    • 0032570279 scopus 로고    scopus 로고
    • Binding of daunomycin to diaminopurine- and/or inosine-substituted DNA
    • Bailly C., Suh D., Waring M.J., Chaires J.B. Binding of daunomycin to diaminopurine- and/or inosine-substituted DNA. Biochemistry. 37:1998;1033-1045.
    • (1998) Biochemistry , vol.37 , pp. 1033-1045
    • Bailly, C.1    Suh, D.2    Waring, M.J.3    Chaires, J.B.4
  • 22
    • 0025298798 scopus 로고
    • Preferential binding of daunomycin to 5′ATCG and 5′ATGC sequences revealed by footprinting titration experiments
    • Chaires J.B., Herrera J.E., Waring M.J. Preferential binding of daunomycin to 5′ATCG and 5′ATGC sequences revealed by footprinting titration experiments. Biochemistry. 29:1990;6145-6153.
    • (1990) Biochemistry , vol.29 , pp. 6145-6153
    • Chaires, J.B.1    Herrera, J.E.2    Waring, M.J.3
  • 23
    • 0026354983 scopus 로고
    • DNase I-induced DNA conformation. 2 Å structure of a DNase I-octamer complex
    • Lahm A., Suck D. DNase I-induced DNA conformation. 2 Å structure of a DNase I-octamer complex. J. Mol. Biol. 222:1991;645-667.
    • (1991) J. Mol. Biol. , vol.222 , pp. 645-667
    • Lahm, A.1    Suck, D.2
  • 26
    • 0031588962 scopus 로고    scopus 로고
    • CpG methylation remodels chromatin structure in vitro
    • Davey C., Pennings S., Allan J. CpG methylation remodels chromatin structure in vitro. J. Mol. Biol. 267:1997;276-288.
    • (1997) J. Mol. Biol. , vol.267 , pp. 276-288
    • Davey, C.1    Pennings, S.2    Allan, J.3
  • 28
    • 0025264026 scopus 로고
    • Pyrimidine 5-methyl groups influence the magnitude of DNA curvature
    • Hagerman P.J. Pyrimidine 5-methyl groups influence the magnitude of DNA curvature. Biochemistry. 29:1990;1980-1983.
    • (1990) Biochemistry , vol.29 , pp. 1980-1983
    • Hagerman, P.J.1
  • 29
    • 0026808756 scopus 로고
    • Cytosine methylation can induce local distortions in the structure of duplex DNA
    • Hodges-Garcia Y., Hagerman P.J. Cytosine methylation can induce local distortions in the structure of duplex DNA. Biochemistry. 31:1992;7595-7599.
    • (1992) Biochemistry , vol.31 , pp. 7595-7599
    • Hodges-Garcia, Y.1    Hagerman, P.J.2
  • 30
    • 0027723229 scopus 로고
    • Differences in the accessibility of methylated and unmethylated DNA to DNase I
    • Kochanek S., Renz D., Doerfler W. Differences in the accessibility of methylated and unmethylated DNA to DNase I. Nucleic Acids Res. 21:1993;5843-5845.
    • (1993) Nucleic Acids Res. , vol.21 , pp. 5843-5845
    • Kochanek, S.1    Renz, D.2    Doerfler, W.3
  • 31
    • 0027318463 scopus 로고
    • Sequence-dependent DNA structure. The role of base stacking interactions
    • Hunter C.A. Sequence-dependent DNA structure. The role of base stacking interactions. J. Mol. Biol. 230:1993;1025-1054.
    • (1993) J. Mol. Biol. , vol.230 , pp. 1025-1054
    • Hunter, C.A.1
  • 34
    • 0023151436 scopus 로고
    • Interactions between an anthracycline antibiotic and DNA: Molecular structure of daunomycin complexed to d(CpGpTpApCpG) at 1.2-Å resolution
    • Wang A.H., Ughetto G., Quigley G.J., Rich A. Interactions between an anthracycline antibiotic and DNA: molecular structure of daunomycin complexed to d(CpGpTpApCpG) at 1.2-Å resolution. Biochemistry. 26:1987;1152-1163.
    • (1987) Biochemistry , vol.26 , pp. 1152-1163
    • Wang, A.H.1    Ughetto, G.2    Quigley, G.J.3    Rich, A.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.