A limited number of pseudouridine residues in the human atac spliceosomal UsnRNAs as compared to human major spliceosomal UsnRNAs

RNA

Volumn 5, Issue 11, 1999, Pages 1495-1503

  Massenet, Séverine ^a   Branlant, Christiane ^a  

^a Biopôle de l Université de Lorraine   (France)

Author keywords

atac spliceosome; HeLa cells; Posttranscriptional modifications; Splicing; U12 dependent intron

Indexed keywords

PSEUDOURIDINE; SMALL NUCLEAR RNA;

ARTICLE; BASE PAIRING; HELA CELL; HUMAN; HUMAN CELL; MOLECULAR DYNAMICS; MOLECULAR RECOGNITION; PRIORITY JOURNAL; PROTEIN SECONDARY STRUCTURE; RNA TRANSCRIPTION; SPLICEOSOME;

EUKARYOTA; VERTEBRATA;

EID: 0032707206     PISSN: 13558382     EISSN: None     Source Type: Journal    
DOI: 10.1017/S1355838299991537     Document Type: Article

References (43)

1. 2+ in RNA structure and function. Prog Nucleic Acid Res Mol Biol 53:79-129.
2. Auffinger P, Westhof E. 1998. Effects on pseudouridylation on tRNA hydration and dynamics: A theoretical approach. In: Grosjean H, Benne R, eds. The modification and editing of RNA. Washington, DC: ASM Press. pp 103-112.
3. Bakin A, Ofengand J. 1993. Four newly located pseudouridylate residues in Escherichia coli 23S ribosomal RNA are all at the peptidyltransferase center: Analysis by the application of a new sequencing technique. Biochemistry 32:9754-9762.
4. Brow DA, Guthrie C. 1988. Spliceosomal RNA U6 is remarkably conserved from yeast to mammals. Nature 334:213-218.
5. Datta B, Weiner AM. 1991. Genetic evidence for base pairing between U2 and U6 snRNAs in mammalian mRNA splicing. Nature 352:821-824.
6. Davis DR. 1998. Biophysical and conformational properties of modified nucleosides in RNA (nuclear magnetic resonance studies). In: Grosjean H, Benne R, eds. The modification and editing of RNA. Washington, DC: ASM Press. pp 85-102.
7. Dietrich RC, Incorvaia R, Padgett RA. 1997. Terminal intron dinucleotide sequences do not distinguish between U2-and U12-dependent introns. Mol Cell 1:151-160.
8. Field DJ, Friesen JD. 1996. Functionally redundant interactions between U2 and U6 spliceosomal snRNAs. Genes & Dev 10:489-501.
9. Gu J, Patton JR, Shimba S, Reddy R. 1996. Localization of modified nucleotides in Schizosaccharomyces pombe spliceosomal small nuclear RNAs: Modified nucleotides are clustered in functionally important regions. RNA 2:909-918.
10. Hall SL, Padgett RA. 1996. Requirement of U12 snRNA for in vivo splicing of a minor class of eukaryotic nuclear pre-mRNA introns. Science 271:1716-1718.
11. Harada F, Kato N, Nishimura S. 1980. The nucleotide sequence of nuclear 4.8S RNA of mouse cells. Biochem Biophys Res Commun 95:1332-1340.
12. Incorvaia R, Padgett RA. 1998. Base pairing with U6atac snRNA is required for 5′ splice site activation of U12-dependent introns in vivo. RNA 4:709-718.
13. Jackson IJ. 1991. A reappraisal of non-consensus mRNA splice sites. Nucleic Acids Res 19:3795-3798.
14. Kolossova I, Padgett RA. 1997. U11 snRNA interacts in vivo with the 5′ splice site of U12-dependent (AU-AC) pre-mRNA introns. RNA 3:227-233.
15. Krämer A. 1996. The structure and function of proteins involved in mammalian pre-mRNA splicing. Annu Rev Biochem 65:367-409.
16. Krol A, Branlant C, Lazar E, Gallinaro H, Jacob M. 1981. Primary and secondary structures of chicken, rat and man nuclear U4 RNAs. Homologies with U1 and U5 RNAs. Nucleic Acids Res 9:2699-2716.
17. Massenet S, Motorin Y, Lafontaine DL, Hurt EC, Grosjean H, Branlant C. 1999. Pseudouridine mapping in the Saccharomyces cerevisiae spliceosomal U small nuclear RNAs (snRNAs) reveals that pseudouridine synthase Pus1p exhibits a dual substrate specificity for U2 snRNA and tRNA. Mol Cell Biol 19:2142-2154.
18. Massenet S, Mougin A, Branlant C. 1998. Posttranscriptional modifications in the U Small Nuclear RNAs. In: Grosjean H, Benne R, eds. The modification and editing of RNA. Washington, DC: ASM Press. pp 201-228.
19. McPheeters DS, Abelson J. 1992. Mutational analysis of the yeast U2 snRNA suggests a structural similarity to the catalytic core of group I introns. Cell 71:819-831.
20. Moore JM, Query CC, Sharp PA. 1993. Splicing of precursors to messenger RNAs by the spliceosome. In: Gesteland R, Atkins JF, eds. The RNA world. Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press. pp 303-358.
21. Mougin A, Grégoire A, Banroques J, Ségault V, Fournier R, Brulé F, Chevrier-Miller M, Branlant C. 1996. Secondary structure of the yeast Saccharomyces cerevisiae pre-U3A snoRNA and its implication for splicing efficiency. RNA 2:1079-1093.
22. Nilsen TW. 1998. RNA-RNA interactions in nuclear pre-mRNA splicing. In: Simos RW, Grunberg-Manago M, eds. RNA structure and function. Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press. pp 279-308.
23. Pascolo E, Séraphin B. 1997. The branchpoint residue is recognized during commitment complex formation before being bulged out of the U2 snRNA-pre-mRNA duplex. Mol Cell Biol 17:3469-3476.
24. Patton JR. 1994. Pseudouridine formation in small nuclear RNAs. Biochimie 76:1129-1132.
25. Peattie DA. 1979. Direct chemical method for sequencing RNA. Proc Natl Acad Sci USA 76:1760-1764.
26. Reddy R. 1988. Compilation of small RNA sequences. Nucleic Acids Res 16:71-85.
27. Reddy R, Henning D, Epstein P, Busch H. 1981. Primary and secondary structure of U2 snRNA. Nucleic Acids Res 9:5645-5658.
28. Ségault V, Will CL, Sproat BS, Lührmann R. 1995. In vitro reconstitution of mammalian U2 and U5 snRNPs active in splicing: Sm proteins are functionally interchangeable and are essential for the formation of functional U2 and U5 snRNPs. EMBO J 14:4010-4021.
29. Sharp PA, Burge CB. 1997. Classification of introns: U2-type or U12-type. Cell 91:875-879.
30. Shukla GC, Padgett RA. 1999. Conservation of functional features of U6atac and U12 snRNAs between vertebrates and higher plants. RNA 5:525-538.
31. Sun JS, Manley JL. 1995. A novel U2-U6 snRNA structure is necessary for mammalian mRNA splicing. Genes & Dev 9:843-854.
32. Szkukalek A, Myslinski E, Mougin A, Lührmann R, Branlant C. 1995. Phylogenetic conservation of modified nucleotides in the terminal loop 1 of the spliceosomal U5 snRNA. Biochimie 77:16-21.
33. Tarn WY, Steitz JA. 1996a. Highly diverged U4 and U6 small nuclear RNAs required for splicing rare AT-AC introns. Science 273:1824-1832.
34. Tarn WY, Steitz JA. 1996b. A novel spliceosome containing U11, U12, and U5 snRNPs excises a minor class (AT-AC) intron in vitro. Cell 84:801-811.
35. Wang W, Krug RM. 1998. U6atac snRNA, the highly divergent counterpart of U6 snRNA, is the specific target that mediates inhibition of AT-AC splicing by the influenza virus NS1 protein. RNA 4:55-64.
36. Wassarman KM, Steitz JA. 1992. The low-abundance U11 and U12 small nuclear ribonucleoproteins (snRNPs) interact to form a two-snRNP complex. Mol Cell Biol 12:1276-1285.
37. Wu JA, Manley JL. 1991. Base pairing between U2 and U6 snRNAs is necessary for splicing of a mammalian pre-mRNA. Nature 352:818-821.
38. Wu Q, Krainer AR. 1999. AT-AC pre-mRNA splicing mechanisms and conservation of minor introns in voltage-gated ion channel genes. Mol Cell Biol 19:3225-3236.
39. Yan D, Ares M Jr. 1996. Invariant U2 RNA sequences bordering the branchpoint recognition region are essential for interaction with yeast SF3a and SF3b subunits. Mol Cell Biol 16:818-828.
40. Yu YT, Shu MD, Steitz JA. 1998. Modifications of U2 snRNA are required for snRNP assembly and pre-mRNA splicing. EMBO J 17:5783-5795.
41. Yu YT, Steitz JA. 1997. Site-specific crosslinking of mammalian U11 and U6atac to the 5′ splice site of an AT-AC intron. Proc Natl Acad Sci USA 94:6030-6035.
42. Zerby DB, Patton JR. 1996. Metabolism of pre-messenger RNA splicing cofactors: Modification of U6 RNA is dependent on its interaction with U4 RNA. Nucleic Acids Res 24:3583-3589.
43. Zerby DB, Patton JR. 1997. Modification of human U4 RNA requires U6 RNA and multiple pseudouridine synthases. Nucleic Acids Res 25:4808-4815.