메뉴 건너뛰기




Volumn 37, Issue 4, 1999, Pages 619-627

Crystal structure of a thermophilic alcohol dehydrogenase substrate complex suggests determinants of substrate specificity and thermostability

Author keywords

Crystallography; Enzyme; Extremophile; Heat stable; Substrate binding

Indexed keywords

ALCOHOL DEHYDROGENASE; HYDROGEN; ZINC ION;

EID: 0032703356     PISSN: 08873585     EISSN: None     Source Type: Journal    
DOI: 10.1002/(SICI)1097-0134(19991201)37:4<619::AID-PROT12>3.0.CO;2-H     Document Type: Article
Times cited : (56)

References (48)
  • 1
    • 0019554401 scopus 로고
    • Novel NADP-linked alcohol - Aldehyde/ ketone oxidoreductase in thermophilic ethanologenic bacteria
    • Lamed RJ, Zeikus JG. Novel NADP-linked alcohol - aldehyde/ ketone oxidoreductase in thermophilic ethanologenic bacteria. Biochem J 1981;195:183-190.
    • (1981) Biochem J , vol.195 , pp. 183-190
    • Lamed, R.J.1    Zeikus, J.G.2
  • 2
    • 0043125437 scopus 로고
    • Thermostable enzymes in organic Synthesis, 4. TBADH-catalyzed preparation of bifunctional chirons, total synthesis of S-(+)-Z-tetradeca-5-en-13-olide
    • Keinan E, Seth KK, Lamed R, Ghirlando R, Singh SP. Thermostable enzymes in organic Synthesis, 4. TBADH-catalyzed preparation of bifunctional chirons, total synthesis of S-(+)-Z-tetradeca-5-en-13-olide. Biocatalysis 1990;3:57-71.
    • (1990) Biocatalysis , vol.3 , pp. 57-71
    • Keinan, E.1    Seth, K.K.2    Lamed, R.3    Ghirlando, R.4    Singh, S.P.5
  • 3
    • 0024327951 scopus 로고
    • Amino acid sequence of alcohol dehydrogenase from the thermophilic bacterium Thermoanaerobacter brockii
    • Peretz M, Burstein Y. Amino acid sequence of alcohol dehydrogenase from the thermophilic bacterium Thermoanaerobacter brockii. Biochemistry 1989;28:6549-6555.
    • (1989) Biochemistry , vol.28 , pp. 6549-6555
    • Peretz, M.1    Burstein, Y.2
  • 4
    • 0031055738 scopus 로고    scopus 로고
    • Thermoanaerobacter brockii alcohol dehydrogenase: Characterization of the active site metal and its ligand amino acids
    • Bogin O, Peretz M, Burstein Y. Thermoanaerobacter brockii alcohol dehydrogenase: characterization of the active site metal and its ligand amino acids. Protein Sci 1997;6:450-458.
    • (1997) Protein Sci , vol.6 , pp. 450-458
    • Bogin, O.1    Peretz, M.2    Burstein, Y.3
  • 5
    • 0031837178 scopus 로고    scopus 로고
    • Enhanced thermal stability of Clostridium beijerinckii alcohol dehydrogenase after strategic substitution of amino acid residues with prolines from the homologous thermophilic Thermoanaerobacter brockii alcohol dehydrogenase
    • Bogin O, Peretz M, Hacham Y, et al. Enhanced thermal stability of Clostridium beijerinckii alcohol dehydrogenase after strategic substitution of amino acid residues with prolines from the homologous thermophilic Thermoanaerobacter brockii alcohol dehydrogenase. Protein Sci 1998;7:1156-1163.
    • (1998) Protein Sci , vol.7 , pp. 1156-1163
    • Bogin, O.1    Peretz, M.2    Hacham, Y.3
  • 6
    • 0029383222 scopus 로고
    • A review of protein engineering for the food industry
    • Goodenough PW. A review of protein engineering for the food industry. Mol Biotechnol 1995;4:151-166.
    • (1995) Mol Biotechnol , vol.4 , pp. 151-166
    • Goodenough, P.W.1
  • 7
    • 0343854374 scopus 로고
    • Thermophilic enzymes and their biotechnological potential
    • Lasa I, Berenguer J. Thermophilic enzymes and their biotechnological potential. Microbiologia 1993;9:77-89.
    • (1993) Microbiologia , vol.9 , pp. 77-89
    • Lasa, I.1    Berenguer, J.2
  • 8
    • 0026469488 scopus 로고
    • The enzymes from extreme thermophiles: Bacterial sources, thermostabilities and industrial relevance
    • Coolbear T, Daniel RM, Morgan HW. The enzymes from extreme thermophiles: bacterial sources, thermostabilities and industrial relevance. Adv Biochem Eng Biotechnol 1992;45:57-98.
    • (1992) Adv Biochem Eng Biotechnol , vol.45 , pp. 57-98
    • Coolbear, T.1    Daniel, R.M.2    Morgan, H.W.3
  • 9
    • 0031567156 scopus 로고    scopus 로고
    • Crystal structures of Escherichia coli and Salmonella typhimurium 3-isopropylmalate dehydrogenase and comparison with their thermophilic counterpart from Thermus thermophilus
    • Wallon G, Kryger G, Lovett S, Oshima T, Ringe D, Petsko GA. Crystal structures of Escherichia coli and Salmonella typhimurium 3-isopropylmalate dehydrogenase and comparison with their thermophilic counterpart from Thermus thermophilus. J Mol Biol 1997;266:1016-1031.
    • (1997) J Mol Biol , vol.266 , pp. 1016-1031
    • Wallon, G.1    Kryger, G.2    Lovett, S.3    Oshima, T.4    Ringe, D.5    Petsko, G.A.6
  • 10
    • 0028968018 scopus 로고
    • Studies on protein stability with T4 lysozyme
    • Matthews BW Studies on protein stability with T4 lysozyme. Adv Protein Chem 1995;46:249-278.
    • (1995) Adv Protein Chem , vol.46 , pp. 249-278
    • Matthews, B.W.1
  • 11
    • 0029644328 scopus 로고
    • Hyperthermophiles: Taking the heat and loving it
    • Rees DC, Adams MW. Hyperthermophiles: taking the heat and loving it. Structure 1995;3:251-254.
    • (1995) Structure , vol.3 , pp. 251-254
    • Rees, D.C.1    Adams, M.W.2
  • 12
    • 0029115963 scopus 로고
    • The optimization of protein-solvent interactions: Thermostability and the role of hydrophobic and electrostatic interactions
    • Spassov VZ, Karshikoff AD, Ladenstein R. The optimization of protein-solvent interactions: thermostability and the role of hydrophobic and electrostatic interactions. Protein Sci 1995;4:1516-1527.
    • (1995) Protein Sci , vol.4 , pp. 1516-1527
    • Spassov, V.Z.1    Karshikoff, A.D.2    Ladenstein, R.3
  • 13
    • 0027051883 scopus 로고
    • X-ray crystal structures of the oxidized and reduced forms of the rubredoxin from the marine hyperthermophilic archaebacterium Pyrococcus furiosus
    • Day MW, Hsu BT, Joshua-Tor L, et al. X-ray crystal structures of the oxidized and reduced forms of the rubredoxin from the marine hyperthermophilic archaebacterium Pyrococcus furiosus. Protein Sci 1992;1:1494-1507.
    • (1992) Protein Sci , vol.1 , pp. 1494-1507
    • Day, M.W.1    Hsu, B.T.2    Joshua-Tor, L.3
  • 14
    • 0029099960 scopus 로고
    • Engineering thermostability: Lessons from thermophilic proteins
    • Russell RJ, Taylor GL. Engineering thermostability: lessons from thermophilic proteins. Curr Opin Biotechnol 1995;6:370-374.
    • (1995) Curr Opin Biotechnol , vol.6 , pp. 370-374
    • Russell, R.J.1    Taylor, G.L.2
  • 15
    • 0029988542 scopus 로고    scopus 로고
    • Crystal structure of cod liver class I alcohol dehydrogenase: Substrate pocket and structurally variable segments
    • Ramaswamy S, Ahmad ME, Danielsson O, Jornvall H, Eklund H. Crystal structure of cod liver class I alcohol dehydrogenase: substrate pocket and structurally variable segments. Protein Sci 1996;5:663-671.
    • (1996) Protein Sci , vol.5 , pp. 663-671
    • Ramaswamy, S.1    Ahmad, M.E.2    Danielsson, O.3    Jornvall, H.4    Eklund, H.5
  • 16
    • 0028248607 scopus 로고
    • Crystallographic investigations of alcohol dehydrogenases
    • Eklund H, Ramaswamy S, Plapp BV, et al. Crystallographic investigations of alcohol dehydrogenases. EXS 1994;71:269-277.
    • (1994) EXS , vol.71 , pp. 269-277
    • Eklund, H.1    Ramaswamy, S.2    Plapp, B.V.3
  • 17
    • 0030035667 scopus 로고    scopus 로고
    • X-ray structure of human β3β3 alcohol dehydrogenase: The contribution of ionic interactions to coenzyme binding
    • Davis G J, Bosron W F, Stone CL, Owusu-Dekyi K, Hurley TD. X-ray structure of human β3β3 alcohol dehydrogenase: the contribution of ionic interactions to coenzyme binding. J Biol Chem 1996;271:17057-17061.
    • (1996) J Biol Chem , vol.271 , pp. 17057-17061
    • Davis, G.J.1    Bosron, W.F.2    Stone, C.L.3    Owusu-Dekyi, K.4    Hurley, T.D.5
  • 18
    • 0030877359 scopus 로고    scopus 로고
    • X-ray structure of human class IV σσ alcohol dehydrogenase: Structural basis for substrate specificity
    • Xie P, Parsons SH, Speckhard DC, Bosron WF, Hurley TD. X-ray structure of human class IV σσ alcohol dehydrogenase: structural basis for substrate specificity. J Biol Chem 1997;272:18558-18563.
    • (1997) J Biol Chem , vol.272 , pp. 18558-18563
    • Xie, P.1    Parsons, S.H.2    Speckhard, D.C.3    Bosron, W.F.4    Hurley, T.D.5
  • 19
    • 0028286369 scopus 로고
    • Structures of three human beta alcohol dehydrogenase variants: Correlations with their functional differences
    • Hurley TD, Bosron WF, Stone CL, Amzel LM. Structures of three human beta alcohol dehydrogenase variants: correlations with their functional differences. J Biol Chem 1994;23:415-429.
    • (1994) J Biol Chem , vol.23 , pp. 415-429
    • Hurley, T.D.1    Bosron, W.F.2    Stone, C.L.3    Amzel, L.M.4
  • 20
    • 0020479867 scopus 로고
    • Binding of substrate in a ternary complex of horse liver alcohol dehydrogenase
    • Eklund H, Plapp BV, Samama JP, Branden CI. Binding of substrate in a ternary complex of horse liver alcohol dehydrogenase. J Biol Chem 1982;257:14349-14358.
    • (1982) J Biol Chem , vol.257 , pp. 14349-14358
    • Eklund, H.1    Plapp, B.V.2    Samama, J.P.3    Branden, C.I.4
  • 21
    • 0030484076 scopus 로고    scopus 로고
    • Crystalline alcohol dehydrogenases from the mesophilic bacterium Clostridium beijerinckii and the thermophilic bacterium Thermoanaerobacter brockii: Preparation, characterization and molecular symmetry
    • Korkhin Y, Frolow F, Bogin O, Peretz M, Kalb AJ, Burstein Y. Crystalline alcohol dehydrogenases from the mesophilic bacterium Clostridium beijerinckii and the thermophilic bacterium Thermoanaerobacter brockii: preparation, characterization and molecular symmetry. Acta Crystallogr D Biol Crystallogr 1996;52: 882-886.
    • (1996) Acta Crystallogr D Biol Crystallogr , vol.52 , pp. 882-886
    • Korkhin, Y.1    Frolow, F.2    Bogin, O.3    Peretz, M.4    Kalb, A.J.5    Burstein, Y.6
  • 22
    • 0032557624 scopus 로고    scopus 로고
    • NADP-dependent bacterial alcohol dehydrogenases: Crystal structure, cofactor-binding and cofactor specificity of the ADHs of Clostridium beijerinckii and Thermoanaerobacter brockii
    • Korkhin Y, Kalb (Gilboa) AJ, Peretz M, Bogin O, Burstein Y, Frolow F. NADP-dependent bacterial alcohol dehydrogenases: crystal structure, cofactor-binding and cofactor specificity of the ADHs of Clostridium beijerinckii and Thermoanaerobacter brockii. J Mol Biol 1998;278:967-981.
    • (1998) J Mol Biol , vol.278 , pp. 967-981
    • Korkhin, Y.1    Kalb, A.J.2    Peretz, M.3    Bogin, O.4    Burstein, Y.5    Frolow, F.6
  • 23
    • 0014432781 scopus 로고
    • Solvent content of protein crystals
    • Matthews BW. Solvent content of protein crystals. J Mol Biol 1968;33:491-497.
    • (1968) J Mol Biol , vol.33 , pp. 491-497
    • Matthews, B.W.1
  • 25
    • 84920325457 scopus 로고
    • AMoRe: An automated package for molecular replacement
    • Navaza J. AMoRe: an automated package for molecular replacement. Acta Crystallogr A 1994;50:157-163.
    • (1994) Acta Crystallogr A , vol.50 , pp. 157-163
    • Navaza, J.1
  • 26
    • 0028103275 scopus 로고
    • Collaborative Computational Project, Number 4. Acta Crystallogr 1994;D50:760-763.
    • (1994) Acta Crystallogr , vol.D50 , pp. 760-763
  • 28
    • 3543012707 scopus 로고    scopus 로고
    • Crystallography & NMR system: A new software system for macromolecular structure determination
    • Brünger AT, Adams PD, Clore GM, et al. Crystallography & NMR system: a new software system for macromolecular structure determination. Acta Crystallogr D Biol Crystallogr 1998;54:905-921.
    • (1998) Acta Crystallogr D Biol Crystallogr , vol.54 , pp. 905-921
    • Brünger, A.T.1    Adams, P.D.2    Clore, G.M.3
  • 29
    • 84889120137 scopus 로고
    • Improved methods for building protein models in electron density maps and the location of errors in these models
    • Jones TA, Zou JY, Cowan SW, Kjeldgaard M. Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr A 1991;47:110-119.
    • (1991) Acta Crystallogr A , vol.47 , pp. 110-119
    • Jones, T.A.1    Zou, J.Y.2    Cowan, S.W.3    Kjeldgaard, M.4
  • 30
  • 31
    • 0023035967 scopus 로고
    • Interdomain motion in liver alcohol dehydrogenase. Structural and energetic analysis of the hinge bending mode
    • Collona-Cesari F, Perahia D, Karplus M, Eklund H, Branden CI, Tapia O. Interdomain motion in liver alcohol dehydrogenase. Structural and energetic analysis of the hinge bending mode. J Biol Chem 1986;261:15273-15280.
    • (1986) J Biol Chem , vol.261 , pp. 15273-15280
    • Collona-Cesari, F.1    Perahia, D.2    Karplus, M.3    Eklund, H.4    Branden, C.I.5    Tapia, O.6
  • 32
    • 0023430560 scopus 로고
    • Enhanced protein thermostability from site-directed mutations that decrease the entropy of unfolding
    • Matthews BW, Nicholson H, Becktel WJ. Enhanced protein thermostability from site-directed mutations that decrease the entropy of unfolding. Proc Natl Acad Sci USA 1987;84:6663-6667.
    • (1987) Proc Natl Acad Sci USA , vol.84 , pp. 6663-6667
    • Matthews, B.W.1    Nicholson, H.2    Becktel, W.J.3
  • 33
    • 0024290472 scopus 로고
    • Amino acid preferences for specific locations at the ends of alpha helices
    • Richardson JS, Richardson DC. Amino acid preferences for specific locations at the ends of alpha helices. Science 1988;240:1648-1652.
    • (1988) Science , vol.240 , pp. 1648-1652
    • Richardson, J.S.1    Richardson, D.C.2
  • 35
    • 0024974452 scopus 로고
    • Engineering protein thermal stability: Sequence statistics point to residue substitutions in alpha-helices
    • Menendez-Arias L, Argos P. Engineering protein thermal stability: sequence statistics point to residue substitutions in alpha-helices. J Mol Biol 1989;206:397-406.
    • (1989) J Mol Biol , vol.206 , pp. 397-406
    • Menendez-Arias, L.1    Argos, P.2
  • 36
    • 0027156651 scopus 로고
    • Determinants of protein thermostability observed in the 1.9 Å crystal structure of malate dehydrogenase from the thermophilic bacterium Thermus flavus
    • Kelly CA, Nishiyama M, Ohnishi Y, Beppu T, Birktoft JJ Determinants of protein thermostability observed in the 1.9 Å crystal structure of malate dehydrogenase from the thermophilic bacterium Thermus flavus. Biochemistry 1993;32:3913-3922.
    • (1993) Biochemistry , vol.32 , pp. 3913-3922
    • Kelly, C.A.1    Nishiyama, M.2    Ohnishi, Y.3    Beppu, T.4    Birktoft, J.J.5
  • 37
    • 84962439356 scopus 로고    scopus 로고
    • Roles of electrostatic interaction in proteins
    • Nakamura H. Roles of electrostatic interaction in proteins. Q Rev Biophys 1996;29:1-90.
    • (1996) Q Rev Biophys , vol.29 , pp. 1-90
    • Nakamura, H.1
  • 38
    • 0026654252 scopus 로고
    • Mutational studies of protein structures and their stabilities
    • Shortle D. Mutational studies of protein structures and their stabilities. Q Rev Biophys 1992;25:205-250.
    • (1992) Q Rev Biophys , vol.25 , pp. 205-250
    • Shortle, D.1
  • 40
    • 0025663105 scopus 로고
    • Strength and co-operativity of contributions of surface salt bridges to protein stability
    • Horovitz A, Serrano L, Avron B, Bycroft M, Fersht, AR. Strength and co-operativity of contributions of surface salt bridges to protein stability. J Mol Biol 1990;216:1031-1044.
    • (1990) J Mol Biol , vol.216 , pp. 1031-1044
    • Horovitz, A.1    Serrano, L.2    Avron, B.3    Bycroft, M.4    Fersht, A.R.5
  • 41
    • 0031564613 scopus 로고    scopus 로고
    • Crystal structure of glutamate dehydrogenase from the hyperthermophilic eubacterium thermotoga maritima at 3.0 Å resolution
    • Knapp S, de Vos WM, Rice D, Ladenstein R. Crystal structure of glutamate dehydrogenase from the hyperthermophilic eubacterium Thermotoga maritima at 3.0 Å resolution. J Mol Biol 1997;267:916-932.
    • (1997) J Mol Biol , vol.267 , pp. 916-932
    • Knapp, S.1    De Vos, W.M.2    Rice, D.3    Ladenstein, R.4
  • 42
    • 0032528267 scopus 로고    scopus 로고
    • Insights into the molecular basis of thermal stability from the analysis of ion-pair networks in the glutamate dehydrogenase family
    • Yip KS, Britton KL, Stillman TJ, et al. Insights into the molecular basis of thermal stability from the analysis of ion-pair networks in the glutamate dehydrogenase family. Eur J Biochem 1998;255:336-346.
    • (1998) Eur J Biochem , vol.255 , pp. 336-346
    • Yip, K.S.1    Britton, K.L.2    Stillman, T.J.3
  • 43
    • 13244249836 scopus 로고
    • The structure of Pyrococcus furiosis glutamate dehydrogenase reveals a key role for ion-pair networks in maintaining enzyme stability at extreme temperatures
    • Yip KS, Stillman TJ, Britton KL, et al. The structure of Pyrococcus furiosis glutamate dehydrogenase reveals a key role for ion-pair networks in maintaining enzyme stability at extreme temperatures. Structure 1995;3:1147-1158.
    • (1995) Structure , vol.3 , pp. 1147-1158
    • Yip, K.S.1    Stillman, T.J.2    Britton, K.L.3
  • 44
    • 0032504088 scopus 로고    scopus 로고
    • Engineering activity and stability of Thermotoga maritima glutamate dehydrogenase. I. Introduction of a six-residue ion-pair network in the hinge region
    • Lebbink JH, Knapp S, van der Oost J, Rice D, Ladenstein R, de Vos WM. Engineering activity and stability of Thermotoga maritima glutamate dehydrogenase. I. Introduction of a six-residue ion-pair network in the hinge region. J Mol Biol 1998;280:287-296.
    • (1998) J Mol Biol , vol.280 , pp. 287-296
    • Lebbink, J.H.1    Knapp, S.2    Van Der Oost, J.3    Rice, D.4    Ladenstein, R.5    De Vos, W.M.6
  • 45
    • 0033523004 scopus 로고    scopus 로고
    • Engineering activity and stability of Thermotoga maritima glutamate dehydrogenase. II. Construction of a 16-residue ion-pair network at the subunit interface
    • Lebbink JH, Knapp S, van der Oost J, Rice D, Ladenstein R, de Vos WM. Engineering activity and stability of Thermotoga maritima glutamate dehydrogenase. II. Construction of a 16-residue ion-pair network at the subunit interface. J Mol Biol 1999;289:357-369.
    • (1999) J Mol Biol , vol.289 , pp. 357-369
    • Lebbink, J.H.1    Knapp, S.2    Van Der Oost, J.3    Rice, D.4    Ladenstein, R.5    De Vos, W.M.6
  • 46
    • 0026244229 scopus 로고
    • MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures
    • Kraulis PJ. MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures. J Appl Crystallogr 1991;24: 946-950.
    • (1991) J Appl Crystallogr , vol.24 , pp. 946-950
    • Kraulis, P.J.1
  • 47
    • 0028057108 scopus 로고
    • Raster3D Version 2.0. A program for photorealistic molecular graphics
    • Merritt EA, Murphy ME. Raster3D Version 2.0. A program for photorealistic molecular graphics. Acta Crystallogr D Biol Crystallogr 1994;50:869-873.
    • (1994) Acta Crystallogr D Biol Crystallogr , vol.50 , pp. 869-873
    • Merritt, E.A.1    Murphy, M.E.2
  • 48
    • 0033119938 scopus 로고    scopus 로고
    • Further additions to MolScript version 1.4, including reading and contouring of electron-density maps
    • Esnouf R. Further additions to MolScript version 1.4, including reading and contouring of electron-density maps. Acta Crystallogr D Biol Crystallogr 1999;55:938-940.
    • (1999) Acta Crystallogr D Biol Crystallogr , vol.55 , pp. 938-940
    • Esnouf, R.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.