메뉴 건너뛰기




Volumn 276, Issue 2, 1998, Pages 355-365

FruR-mediated transcriptional activation at the ppsA promoter of Escherichia coli

Author keywords

Base removal interference; FruR protein of Escherichia coli; Mutant subunit of RNA polymerase; ppsA gene; Transcription activation

Indexed keywords

BACTERIAL DNA; BACTERIAL PROTEIN; DNA BINDING PROTEIN; MUTANT PROTEIN; REGULATOR PROTEIN; RNA POLYMERASE;

EID: 0032548991     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1997.1548     Document Type: Article
Times cited : (24)

References (53)
  • 1
    • 0029751137 scopus 로고    scopus 로고
    • Transcription activation by the bacteriophage Mu Mor protein requires the C-terminal regions of both alpha and sigma 70 subunits of Escherichia coli RNA polymerase
    • Artsimovitch I., Murakami K., Ishihama A., Howe M. Transcription activation by the bacteriophage Mu Mor protein requires the C-terminal regions of both alpha and sigma 70 subunits of Escherichia coli RNA polymerase. J. Biol. Chem. 271:1996;32343-32348
    • (1996) J. Biol. Chem. , vol.271 , pp. 32343-32348
    • Artsimovitch, I.1    Murakami, K.2    Ishihama, A.3    Howe, M.4
  • 2
    • 0030965301 scopus 로고    scopus 로고
    • Region 2.5 of the Escherichia coli RNA polymerase sigma 70 subunit is responsible for the recognition of the "extended -10" motif at promoters
    • Barne K.A., Bown J.A., Busby S.J.W., Minchin S.D. Region 2.5 of the Escherichia coli RNA polymerase sigma 70 subunit is responsible for the recognition of the "extended -10" motif at promoters. EMBO J. 16:1997;4034-4040
    • (1997) EMBO J. , vol.16 , pp. 4034-4040
    • Barne, K.A.1    Bown, J.A.2    Busby, S.J.W.3    Minchin, S.D.4
  • 3
    • 0031053471 scopus 로고    scopus 로고
    • Nature of DNA binding and RNA polymerase interaction of the Bordetella pertussis BvgA transcriptional activator at the fha promoter
    • Boucher P.E., Murakami K., Ishihama A., Stibitz S. Nature of DNA binding and RNA polymerase interaction of the Bordetella pertussis BvgA transcriptional activator at the fha promoter. J. Bacteriol. 179:1997;1755-1763
    • (1997) J. Bacteriol. , vol.179 , pp. 1755-1763
    • Boucher, P.E.1    Murakami, K.2    Ishihama, A.3    Stibitz, S.4
  • 4
    • 0019513663 scopus 로고
    • Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli
    • Brosius J., Dull T.J., Sleeter D.D., Noller H.F. Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli. J. Mol. Biol. 148:1981;107-124
    • (1981) J. Mol. Biol. , vol.148 , pp. 107-124
    • Brosius, J.1    Dull, T.J.2    Sleeter, D.D.3    Noller, H.F.4
  • 5
    • 0014200967 scopus 로고
    • Nucleotide sequence of 5 S ribosomal RNA from Escherichia coli
    • Brownlee G.G., Sanger F., Barrell B.G. Nucleotide sequence of 5 S ribosomal RNA from Escherichia coli. Nature. 215:1967;735-736
    • (1967) Nature , vol.215 , pp. 735-736
    • Brownlee, G.G.1    Sanger, F.2    Barrell, B.G.3
  • 6
    • 0023425411 scopus 로고
    • Missing contact probing of DNA-protein interactions
    • Brunelle A., Schleif R.F. Missing contact probing of DNA-protein interactions. Proc. Natl Acad. Sci. USA. 84:1987;6673-6676
    • (1987) Proc. Natl Acad. Sci. USA , vol.84 , pp. 6673-6676
    • Brunelle, A.1    Schleif, R.F.2
  • 7
    • 0023425487 scopus 로고
    • Promoter recognition and promoter strength in the Escherichia coli system
    • Brunner M., Bujard H. Promoter recognition and promoter strength in the Escherichia coli system. EMBO J. 6:1987;3139-3144
    • (1987) EMBO J. , vol.6 , pp. 3139-3144
    • Brunner, M.1    Bujard, H.2
  • 9
    • 0028061282 scopus 로고
    • Promoter structure, promoter recognition, and transcription activation in prokaryotes
    • Busby S., Ebright R.H. Promoter structure, promoter recognition, and transcription activation in prokaryotes. Cell. 79:1994;743-746
    • (1994) Cell , vol.79 , pp. 743-746
    • Busby, S.1    Ebright, R.H.2
  • 10
    • 0024847691 scopus 로고
    • Recognition of nucleotide sequences at the Escherichia coli galactose operon P1 by RNA polymerase
    • Chan B., Busby S. Recognition of nucleotide sequences at the Escherichia coli galactose operon P1 by RNA polymerase. Gene. 84:1989;227-236
    • (1989) Gene , vol.84 , pp. 227-236
    • Chan, B.1    Busby, S.2
  • 11
    • 0025118116 scopus 로고
    • The organization of open complexes between Escherichia coli RNA polymerase and DNA fragments carrying promoters either with or without consensus -35 region sequences
    • Chan B., Spassky A., Busby S. The organization of open complexes between Escherichia coli RNA polymerase and DNA fragments carrying promoters either with or without consensus -35 region sequences. Biochem. J. 270:1990;141-148
    • (1990) Biochem. J. , vol.270 , pp. 141-148
    • Chan, B.1    Spassky, A.2    Busby, S.3
  • 12
    • 0030898164 scopus 로고    scopus 로고
    • Activation of the catBCA promoter: Probing the interaction of CatR and RNA polymerase through in vitro transcription
    • Chugani S.A., Parsek M.R., Hershberger C.D., Murakami K., Ishihama A., Chakrabarty A.M. Activation of the catBCA promoter probing the interaction of CatR and RNA polymerase through in vitro transcription. J. Bacteriol. 179:1997;2221-2227
    • (1997) J. Bacteriol. , vol.179 , pp. 2221-2227
    • Chugani, S.A.1    Parsek, M.R.2    Hershberger, C.D.3    Murakami, K.4    Ishihama, A.5    Chakrabarty, A.M.6
  • 13
    • 0026003072 scopus 로고
    • Control site location and transcriptional regulation in Escherichia coli
    • Collado-Vides J., Magasanik B., Gralla J.D. Control site location and transcriptional regulation in Escherichia coli. Microbiol. Rev. 55:1991;371-394
    • (1991) Microbiol. Rev. , vol.55 , pp. 371-394
    • Collado-Vides, J.1    Magasanik, B.2    Gralla, J.D.3
  • 14
    • 0028239937 scopus 로고
    • In vitro asymmetric binding of the pleiotropic regulatory protein, FruR, to the ace operator controlling glyoxylate shunt enzyme synthesis
    • Cortay J.C., Nègre D., Scarabel M., Ramseier T.M., Vartak N.B., Reizer J., Cozzone A.J. In vitro asymmetric binding of the pleiotropic regulatory protein, FruR, to the ace operator controlling glyoxylate shunt enzyme synthesis. J. Biol. Chem. 269:1994;14885-14891
    • (1994) J. Biol. Chem. , vol.269 , pp. 14885-14891
    • Cortay, J.C.1    Nègre, D.2    Scarabel, M.3    Ramseier, T.M.4    Vartak, N.B.5    Reizer, J.6    Cozzone, A.J.7
  • 15
    • 0029814025 scopus 로고    scopus 로고
    • Influence of DNA geometry on transcriptional activation in Escherichia coli
    • Dethiollaz S., Eichenberger P., Geiselmann J. Influence of DNA geometry on transcriptional activation in Escherichia coli. EMBO J. 15:1996;5449-5458
    • (1996) EMBO J. , vol.15 , pp. 5449-5458
    • Dethiollaz, S.1    Eichenberger, P.2    Geiselmann, J.3
  • 16
    • 0030907304 scopus 로고    scopus 로고
    • Activation of prokaryotic transcription through arbitrary protein-protein contacts
    • Dove S.L., Joung J.K., Hochschild A. Activation of prokaryotic transcription through arbitrary protein-protein contacts. Nature. 386:1997;627-630
    • (1997) Nature , vol.386 , pp. 627-630
    • Dove, S.L.1    Joung, J.K.2    Hochschild, A.3
  • 17
    • 0030871683 scopus 로고    scopus 로고
    • Structural kinetics of transcription activation at the malT promoter of Escherichia coli by UV laser footprinting
    • Eichenberger P., Déthiollaz S., Buc H., Geiselmann J. Structural kinetics of transcription activation at the malT promoter of Escherichia coli by UV laser footprinting. Proc. Natl Acad. Sci. USA. 94:1997;9022-9027
    • (1997) Proc. Natl Acad. Sci. USA , vol.94 , pp. 9022-9027
    • Eichenberger, P.1    Déthiollaz, S.2    Buc, H.3    Geiselmann, J.4
  • 18
    • 0019877067 scopus 로고
    • A gel electrophoresis method for quantifying the binding of proteins to specific DNA regions: Application to components of the Escherichia coli lactose operon regulatory system
    • Garner M.M., Revzin A. A gel electrophoresis method for quantifying the binding of proteins to specific DNA regions application to components of the Escherichia coli lactose operon regulatory system. Nucl. Acids Res. 9:1981;3047-3060
    • (1981) Nucl. Acids Res. , vol.9 , pp. 3047-3060
    • Garner, M.M.1    Revzin, A.2
  • 20
    • 0020713848 scopus 로고
    • Repressor structure and the mechanism of positive control
    • Hochschild A., Irwin N., Ptashne M. Repressor structure and the mechanism of positive control. Cell. 32:1983;319-325
    • (1983) Cell , vol.32 , pp. 319-325
    • Hochschild, A.1    Irwin, N.2    Ptashne, M.3
  • 21
    • 0000228266 scopus 로고
    • Bipartite functional map of the E. coli RNA polymerase alpha subunit: Involvement of the C-terminal region in transcription activation by cAMP-CRP
    • Igarashi K., Ishihama A. Bipartite functional map of the E. coli RNA polymerase alpha subunit involvement of the C-terminal region in transcription activation by cAMP-CRP. Cell. 32:1991;319-325
    • (1991) Cell , vol.32 , pp. 319-325
    • Igarashi, K.1    Ishihama, A.2
  • 22
    • 0027262508 scopus 로고
    • Protein-protein communication within the transcription apparatus
    • Ishihama A. Protein-protein communication within the transcription apparatus. J. Bacteriol. 175:1993;2483-2489
    • (1993) J. Bacteriol. , vol.175 , pp. 2483-2489
    • Ishihama, A.1
  • 24
    • 0026067489 scopus 로고
    • Specific contacts between the bacteriophage T3, T7 and SP6 RNA polymerases and their promoters
    • Jorgensen E.D., Durbin R.K., Risman S.S., McAllister W.T. Specific contacts between the bacteriophage T3, T7 and SP6 RNA polymerases and their promoters. J. Biol. Chem. 266:1991;645-651
    • (1991) J. Biol. Chem. , vol.266 , pp. 645-651
    • Jorgensen, E.D.1    Durbin, R.K.2    Risman, S.S.3    McAllister, W.T.4
  • 25
    • 0024346633 scopus 로고
    • Rapid insertional mutagenesis of DNA by polymerase chain reaction (PCR)
    • Kammann M., Laufs J., Schell J., Gronenborn B. Rapid insertional mutagenesis of DNA by polymerase chain reaction (PCR). Nucl. Acids Res. 17:1989;5404-5404
    • (1989) Nucl. Acids Res. , vol.17 , pp. 5404-5404
    • Kammann, M.1    Laufs, J.2    Schell, J.3    Gronenborn, B.4
  • 26
    • 0024814234 scopus 로고
    • Bending of DNA by gene-regulatory proteins: Construction and use of a DNA bending vector
    • Kim J., Zwieb C., Wu C., Adhya S. Bending of DNA by gene-regulatory proteins construction and use of a DNA bending vector. Gene. 85:1989;15-23
    • (1989) Gene , vol.85 , pp. 15-23
    • Kim, J.1    Zwieb, C.2    Wu, C.3    Adhya, S.4
  • 27
    • 0027295666 scopus 로고
    • The minus 35-recognition region of Escherichia coli sigma 70 is inessential for initiation of transcription at an "extended minus 10" promoter
    • Kumar A., Malloch R.A., Fujita N., Smillie D.A., Ishihama A., Hayward R.S. The minus 35-recognition region of Escherichia coli sigma 70 is inessential for initiation of transcription at an "extended minus 10" promoter. J. Mol. Biol. 232:1993;406-418
    • (1993) J. Mol. Biol. , vol.232 , pp. 406-418
    • Kumar, A.1    Malloch, R.A.2    Fujita, N.3    Smillie, D.A.4    Ishihama, A.5    Hayward, R.S.6
  • 30
    • 0027339446 scopus 로고
    • Role of the sigma 70 subunit of RNA polymerase in transcriptional activation by activator protein PhoB in Escherichia coli
    • Makino K., Amemura M., Kim S., Nakata A., Shinagawa H. Role of the sigma 70 subunit of RNA polymerase in transcriptional activation by activator protein PhoB in Escherichia coli. Genes Dev. 7:1993;149-160
    • (1993) Genes Dev. , vol.7 , pp. 149-160
    • Makino, K.1    Amemura, M.2    Kim, S.3    Nakata, A.4    Shinagawa, H.5
  • 31
    • 0030271890 scopus 로고    scopus 로고
    • Crystal structure of a sigma 70 subunit fragment from E. coli RNA polymerase
    • Malhotra A., Severinova E., Darst S.A. Crystal structure of a sigma 70 subunit fragment from E. coli RNA polymerase. Cell. 87:1996;127-136
    • (1996) Cell , vol.87 , pp. 127-136
    • Malhotra, A.1    Severinova, E.2    Darst, S.A.3
  • 32
    • 0018846636 scopus 로고
    • Sequencing end-labelled DNA with base-specific chemical cleavages
    • Maxam A.M., Gilbert W. Sequencing end-labelled DNA with base-specific chemical cleavages. Methods Enzymol. 65:1980;499-560
    • (1980) Methods Enzymol. , vol.65 , pp. 499-560
    • Maxam, A.M.1    Gilbert, W.2
  • 33
    • 0021738991 scopus 로고
    • Improved plasmid vectors for the isolation of translational lac gene fusions
    • Minton N.P. Improved plasmid vectors for the isolation of translational lac gene fusions. Gene. 31:1984;269-273
    • (1984) Gene , vol.31 , pp. 269-273
    • Minton, N.P.1
  • 34
    • 0029756802 scopus 로고    scopus 로고
    • Transcription factor recognition surface on the RNA polymerase alpha subunit is involved in contact with the DNA enhancer element
    • Murakami K., Fujita N., Ishihama A. Transcription factor recognition surface on the RNA polymerase alpha subunit is involved in contact with the DNA enhancer element. EMBO J. 15:1996;4358-4367
    • (1996) EMBO J. , vol.15 , pp. 4358-4367
    • Murakami, K.1    Fujita, N.2    Ishihama, A.3
  • 35
    • 0029762915 scopus 로고    scopus 로고
    • Definition of a consensus DNA-binding site for the Escherichia coli pleiotropic regulatory protein, FruR
    • Nègre D., Bonod-Bidaud C., Geourjon C., Deleage G., Cozzone A.J., Cortay J.C. Definition of a consensus DNA-binding site for the Escherichia coli pleiotropic regulatory protein, FruR. Mol. Microbiol. 21:1996;257-266
    • (1996) Mol. Microbiol. , vol.21 , pp. 257-266
    • Nègre, D.1    Bonod-Bidaud, C.2    Geourjon, C.3    Deleage, G.4    Cozzone, A.J.5    Cortay, J.C.6
  • 36
    • 1842335066 scopus 로고    scopus 로고
    • DNA flexibility of the UP element is a major determinant for transcriptional activation at the Escherichia coli acetate promoter
    • Nègre D., Bonod-Bidaud C., Oudot C., Prost J.F., Kolb A., Ishihama A., Cozzone A.J., Cortay J.C. DNA flexibility of the UP element is a major determinant for transcriptional activation at the Escherichia coli acetate promoter. Nucl. Acids Res. 25:1997;713-718
    • (1997) Nucl. Acids Res. , vol.25 , pp. 713-718
    • Nègre, D.1    Bonod-Bidaud, C.2    Oudot, C.3    Prost, J.F.4    Kolb, A.5    Ishihama, A.6    Cozzone, A.J.7    Cortay, J.C.8
  • 37
    • 0026528726 scopus 로고
    • Cloning and nucleotide sequence of the Escherichia coli K-12 ppsA gene, encoding PEP synthase
    • Niersbach M., Kreuzaler F., Geerse R.H., Postma P.W., Hirsch H.J. Cloning and nucleotide sequence of the Escherichia coli K-12 ppsA gene, encoding PEP synthase. Mol. Gen. Genet. 231:1992;332-336
    • (1992) Mol. Gen. Genet. , vol.231 , pp. 332-336
    • Niersbach, M.1    Kreuzaler, F.2    Geerse, R.H.3    Postma, P.W.4    Hirsch, H.J.5
  • 38
    • 0030582675 scopus 로고    scopus 로고
    • Transcription activation at classII CAP-dependent promoters: Two interactions between CAP and RNA polymerase
    • Niu W., Kim Y., Tau G., Heyduk T., Ebright R.H. Transcription activation at classII CAP-dependent promoters two interactions between CAP and RNA polymerase. Cell. 87:1996;1123-1134
    • (1996) Cell , vol.87 , pp. 1123-1134
    • Niu, W.1    Kim, Y.2    Tau, G.3    Heyduk, T.4    Ebright, R.H.5
  • 40
    • 0030448621 scopus 로고    scopus 로고
    • DNA looping and lac repressor-CAP interaction
    • Perros M., Steitz T.A. DNA looping and lac repressor-CAP interaction. Science. 274:1996;1929-1930
    • (1996) Science , vol.274 , pp. 1929-1930
    • Perros, M.1    Steitz, T.A.2
  • 41
    • 0027444619 scopus 로고
    • In vitro binding of the pleiotropic transcriptional regulatory protein, FruR, to the fru, pps, ace, pts and icd operons of Escherichia coli and Salmonella typhimurium
    • Ramseier T.M., Nègre D., Cortay J.C., Scarabel M., Cozzone A.J., Saier M.H. Jr. In vitro binding of the pleiotropic transcriptional regulatory protein, FruR, to the fru, pps, ace, pts and icd operons of Escherichia coli and Salmonella typhimurium. J. Mol. Biol. 234:1993;28-44
    • (1993) J. Mol. Biol. , vol.234 , pp. 28-44
    • Ramseier, T.M.1    Nègre, D.2    Cortay, J.C.3    Scarabel, M.4    Cozzone, A.J.5    Saier Jr., M.H.6
  • 42
    • 0029147255 scopus 로고
    • The global regulatory protein FruR modulates the direction of carbon flow in Escherichia coli
    • Ramseier T.M., Bledig S., Michotey V., Feghali R., Saier M.H. Jr. The global regulatory protein FruR modulates the direction of carbon flow in Escherichia coli. Mol. Microbiol. 16:1995;1157-1169
    • (1995) Mol. Microbiol. , vol.16 , pp. 1157-1169
    • Ramseier, T.M.1    Bledig, S.2    Michotey, V.3    Feghali, R.4    Saier Jr., M.H.5
  • 43
    • 0025342916 scopus 로고
    • Bacterial RNA isolation with one-hour centrifugation in a table-top ultracentrifuge
    • Reddy K.J., Webb R., Sherman L.A. Bacterial RNA isolation with one-hour centrifugation in a table-top ultracentrifuge. Biotechniques. 8:1990;250-251
    • (1990) Biotechniques , vol.8 , pp. 250-251
    • Reddy, K.J.1    Webb, R.2    Sherman, L.A.3
  • 44
    • 0029978882 scopus 로고    scopus 로고
    • Integration host factor amplifies the induction of the aceBAK operon of Escherichia coli by relieving IclR repression
    • Resnik E., Pan B., Ramani N., Freundlich M., LaPorte D.C. Integration host factor amplifies the induction of the aceBAK operon of Escherichia coli by relieving IclR repression. J. Bacteriol. 178:1996;2715-2717
    • (1996) J. Bacteriol. , vol.178 , pp. 2715-2717
    • Resnik, E.1    Pan, B.2    Ramani, N.3    Freundlich, M.4    Laporte, D.C.5
  • 45
  • 47
    • 0028868237 scopus 로고
    • Overpurification, purification and structural characterization of the functional N-terminal DNA-binding domain of the fru repressor from Escherichia coli K-12
    • Scarabel M., Penin F., Bonod-Bidaud C., Nègre D., Cozzone A.J., Cortay J.C. Overpurification, purification and structural characterization of the functional N-terminal DNA-binding domain of the fru repressor from Escherichia coli K-12. Gene. 153:1995;9-15
    • (1995) Gene , vol.153 , pp. 9-15
    • Scarabel, M.1    Penin, F.2    Bonod-Bidaud, C.3    Nègre, D.4    Cozzone, A.J.5    Cortay, J.C.6
  • 48
    • 0028173030 scopus 로고
    • Crystal structure of LacI member, PurR, bound to DNA: Minor groove binding by α helices
    • Schumacher M.A., Choi K.Y., Zalkin H., Brennan R.G. Crystal structure of LacI member, PurR, bound to DNA minor groove binding by α helices. Science. 266:1994;763-770
    • (1994) Science , vol.266 , pp. 763-770
    • Schumacher, M.A.1    Choi, K.Y.2    Zalkin, H.3    Brennan, R.G.4
  • 49
    • 0028809521 scopus 로고
    • Mapping of the OxyR protein contact site in the C-terminal region of RNA polymerase alpha subunit
    • Tao K., Zou C., Fujita N., Ishihama A. Mapping of the OxyR protein contact site in the C-terminal region of RNA polymerase alpha subunit. J. Bacteriol. 177:1995;6740-6744
    • (1995) J. Bacteriol. , vol.177 , pp. 6740-6744
    • Tao, K.1    Zou, C.2    Fujita, N.3    Ishihama, A.4
  • 50
    • 0023771741 scopus 로고
    • Empirical estimation of protein-induced DNA bending angles: Applications to lambda site-specific recombination complexes
    • Thompson J.F., Landy A. Empirical estimation of protein-induced DNA bending angles applications to lambda site-specific recombination complexes. Nucl. Acids Res. 16:1988;9687-9705
    • (1988) Nucl. Acids Res. , vol.16 , pp. 9687-9705
    • Thompson, J.F.1    Landy, A.2
  • 51
    • 0026724966 scopus 로고
    • A family of bacterial regulators homologous to Gal and Lac repressors
    • Weickert M.J., Adhya S. A family of bacterial regulators homologous to Gal and Lac repressors. J. Biol. Chem. 267:1992;15869-15874
    • (1992) J. Biol. Chem. , vol.267 , pp. 15869-15874
    • Weickert, M.J.1    Adhya, S.2
  • 52
    • 0025826571 scopus 로고
    • Flexibility of the DNA enhances promoter affinity of Echerichia coli RNA polymerase
    • Werel W., Schickor P., Heumann H. Flexibility of the DNA enhances promoter affinity of Echerichia coli RNA polymerase. EMBO J. 10:1991;2589-2594
    • (1991) EMBO J. , vol.10 , pp. 2589-2594
    • Werel, W.1    Schickor, P.2    Heumann, H.3
  • 53
    • 0021268779 scopus 로고
    • The locus of sequence-directed and protein-induced DNA bending
    • Wu H.M., Crothers D.M. The locus of sequence-directed and protein-induced DNA bending. Nature. 308:1984;509-513
    • (1984) Nature , vol.308 , pp. 509-513
    • Wu, H.M.1    Crothers, D.M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.