메뉴 건너뛰기




Volumn 279, Issue 4, 1998, Pages 795-806

Branch migration through DNA sequence heterology

Author keywords

Branch migration; Holliday junction; Mismatches; Recombination

Indexed keywords

DOUBLE STRANDED DNA; HETERODUPLEX;

EID: 0032546751     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1998.1769     Document Type: Article
Times cited : (39)

References (35)
  • 2
    • 0028869149 scopus 로고
    • Relaxing and unwinding on Holliday: DNA helicase-mediated branch migration
    • Adams, D. E. & West, S. C. (1995). Relaxing and unwinding on Holliday: DNA helicase-mediated branch migration. Mutat. Res. 337, 149-159.
    • (1995) Mutat. Res. , vol.337 , pp. 149-159
    • Adams, D.E.1    West, S.C.2
  • 3
    • 0025769766 scopus 로고
    • Effects of base mismatches on the structure of the four-way DNA junction
    • Duckett, D. R. & Lilley, D. M. J. (1991). Effects of base mismatches on the structure of the four-way DNA junction. J. Mol. Biol. 221, 147-161.
    • (1991) J. Mol. Biol. , vol.221 , pp. 147-161
    • Duckett, D.R.1    Lilley, D.M.J.2
  • 4
    • 0000676688 scopus 로고
    • Random-walk model of homologous recombination
    • Fujitani, Y. & Kobayashi, I. (1995). Random-walk model of homologous recombination. Phys. Rev. sect. E, 52, 6607-6622.
    • (1995) Phys. Rev. Sect. E , vol.52 , pp. 6607-6622
    • Fujitani, Y.1    Kobayashi, I.2
  • 5
    • 0024373710 scopus 로고
    • 6-methylguanine with reference both to Watson-Crick pairs and to mismatched pairs
    • 6-methylguanine with reference both to Watson-Crick pairs and to mismatched pairs. Biochemistry, 28, 5881-5889.
    • (1989) Biochemistry , vol.28 , pp. 5881-5889
    • Gaffney, B.L.1    Jones, R.A.2
  • 6
    • 0030697976 scopus 로고    scopus 로고
    • A histone octamer blocks branch migration of a Holliday junction
    • Grigoriev, M. & Hsieh, P. (1997). A histone octamer blocks branch migration of a Holliday junction. Mol. Cell. Biol. 17, 7139-7150.
    • (1997) Mol. Cell. Biol. , vol.17 , pp. 7139-7150
    • Grigoriev, M.1    Hsieh, P.2
  • 7
    • 0024296726 scopus 로고
    • RecA-mediated strand exchange reactions between duplex DNA molecules containing damaged bases, deletions and insertions
    • Hahn, T.-R., West, S. & Howard-Flanders, P. (1988). RecA-mediated strand exchange reactions between duplex DNA molecules containing damaged bases, deletions and insertions. J. Biol. Chem. 263, 7431-7436.
    • (1988) J. Biol. Chem. , vol.263 , pp. 7431-7436
    • Hahn, T.-R.1    West, S.2    Howard-Flanders, P.3
  • 8
    • 0002012884 scopus 로고
    • DNA branch migration
    • Eckstein, F. Lilley, D. M. J., eds, edit., Springer-Verlag, Berlin
    • Hsieh, P. & Panyutin, I. G. (1995). DNA branch migration. In Nucleic Acids and Molecular Biology (Eckstein, F. Lilley, D. M. J., eds), vol. 9 edit., pp. 42-65, Springer-Verlag, Berlin.
    • (1995) Nucleic Acids and Molecular Biology , vol.9 , pp. 42-65
    • Hsieh, P.1    Panyutin, I.G.2
  • 9
    • 0028067935 scopus 로고
    • RuvA and RuvB proteins facilitate the bypass of heterologous DNA insertions during RecA protein-mediated DNA strand exchange
    • Iype, L. E., Wood, E. A., Inman, R. B. & Cox, M. M. (1994). RuvA and RuvB proteins facilitate the bypass of heterologous DNA insertions during RecA protein-mediated DNA strand exchange. J. Biol. Chem. 269, 24967-24978.
    • (1994) J. Biol. Chem. , vol.269 , pp. 24967-24978
    • Iype, L.E.1    Wood, E.A.2    Inman, R.B.3    Cox, M.M.4
  • 10
    • 0026737631 scopus 로고
    • On the role of ATP hydrolysis in RecA protein-mediated DNA strand exchange. I. Bypassing a short heterologous insert in one DNA substrate
    • Kim, J.-I., Cox, M. M. & Inman, R. B. (1992). On the role of ATP hydrolysis in RecA protein-mediated DNA strand exchange. I. Bypassing a short heterologous insert in one DNA substrate. J. Biol. Chem. 267, 16438-16443.
    • (1992) J. Biol. Chem. , vol.267 , pp. 16438-16443
    • Kim, J.-I.1    Cox, M.M.2    Inman, R.B.3
  • 11
    • 0031583478 scopus 로고    scopus 로고
    • Triple-helical DNA as a reversible block of the branch point in a partially symmetrical DNA fourarm junction
    • Kirby, A. W., Gaskin, M. N., Antezana, M. A., Goodman, S. J., Myers, E. & Bruist, M. F. (1997). Triple-helical DNA as a reversible block of the branch point in a partially symmetrical DNA fourarm junction. J. Mol. Biol. 271, 349-361.
    • (1997) J. Mol. Biol. , vol.271 , pp. 349-361
    • Kirby, A.W.1    Gaskin, M.N.2    Antezana, M.A.3    Goodman, S.J.4    Myers, E.5    Bruist, M.F.6
  • 12
    • 0029784320 scopus 로고    scopus 로고
    • Biochemistry and genetics of eukaryotic mismatch repair
    • Kolodner, R. (1996). Biochemistry and genetics of eukaryotic mismatch repair. Genes Dev. 10, 1433-1442.
    • (1996) Genes Dev. , vol.10 , pp. 1433-1442
    • Kolodner, R.1
  • 15
    • 0027212716 scopus 로고
    • Processing of recombination intermediates by the RecG and RuvAB proteins of Escherichia coli
    • Lloyd, R. G. & Sharples, G. J. (1993). Processing of recombination intermediates by the RecG and RuvAB proteins of Escherichia coli. Nucl. Acids Res. 21, 1719-1725.
    • (1993) Nucl. Acids Res. , vol.21 , pp. 1719-1725
    • Lloyd, R.G.1    Sharples, G.J.2
  • 16
    • 0031571585 scopus 로고    scopus 로고
    • RecA protein assisted selection reveals a low fidelity of recognition in a duplex DNA by an oligonucleotide
    • Malkov, V., Sastry, L. & Camerini-Otero, R. D. (1997). RecA protein assisted selection reveals a low fidelity of recognition in a duplex DNA by an oligonucleotide. J. Mol. Biol. 271, 168-177.
    • (1997) J. Mol. Biol. , vol.271 , pp. 168-177
    • Malkov, V.1    Sastry, L.2    Camerini-Otero, R.D.3
  • 18
    • 0029943449 scopus 로고    scopus 로고
    • Mismatch repair in replication fidelity, genetic recombination, and cancer biology
    • Modrich, P. & Lahue, R. (1996). Mismatch repair in replication fidelity, genetic recombination, and cancer biology. Annu. Rev. Biochem. 65, 101-133.
    • (1996) Annu. Rev. Biochem. , vol.65 , pp. 101-133
    • Modrich, P.1    Lahue, R.2
  • 19
    • 0027985084 scopus 로고
    • Effect of length and location of heterologous sequences on RecA-mediated strand exchange
    • Morel, P., Stasiak, A., Ehrlich, S. D. & Cassuto, E. (1994). Effect of length and location of heterologous sequences on RecA-mediated strand exchange. J. Biol. Chem. 269, 19830-19835.
    • (1994) J. Biol. Chem. , vol.269 , pp. 19830-19835
    • Morel, P.1    Stasiak, A.2    Ehrlich, S.D.3    Cassuto, E.4
  • 20
    • 13144251871 scopus 로고
    • Unusual stability of recombination intermediates made by Escherichia coli RecA protein
    • Muller, B., Burdett, I. & West, S. C. (1992). Unusual stability of recombination intermediates made by Escherichia coli RecA protein. J. Bacteriol. 178, 1237-1241.
    • (1992) J. Bacteriol. , vol.178 , pp. 1237-1241
    • Muller, B.1    Burdett, I.2    West, S.C.3
  • 21
    • 0029929417 scopus 로고    scopus 로고
    • Preparation of Figure 8 and cruciform DNAs and their use in studies of the kinetics of branch migration
    • Mulrooney, S. B., Fishel, R. A., Hejna, J. A. & Warner, R. C. (1996). Preparation of Figure 8 and cruciform DNAs and their use in studies of the kinetics of branch migration. J. Biol. Chem. 271, 9648-9659.
    • (1996) J. Biol. Chem. , vol.271 , pp. 9648-9659
    • Mulrooney, S.B.1    Fishel, R.A.2    Hejna, J.A.3    Warner, R.C.4
  • 22
    • 0030885669 scopus 로고    scopus 로고
    • Effect of base pair A/C and G/T mismatches on the thermal stabilities of DNA oligomers that form B-Z junctions
    • Otokiti, E. O. & Sheardy, R. D. (1997). Effect of base pair A/C and G/T mismatches on the thermal stabilities of DNA oligomers that form B-Z junctions. Biochemistry, 36, 11419-11427.
    • (1997) Biochemistry , vol.36 , pp. 11419-11427
    • Otokiti, E.O.1    Sheardy, R.D.2
  • 23
    • 0027200006 scopus 로고
    • Formation of a single base mismatch impedes spontaneous DNA branch migration
    • Panyutin, I. G. & Hsieh, P. (1993). Formation of a single base mismatch impedes spontaneous DNA branch migration. J. Mol. Biol. 230, 413-424.
    • (1993) J. Mol. Biol. , vol.230 , pp. 413-424
    • Panyutin, I.G.1    Hsieh, P.2
  • 24
    • 0028343925 scopus 로고
    • The kinetics of spontaneous DNA branch migration
    • Panyutin, I. G. & Hsieh, P. (1994). The kinetics of spontaneous DNA branch migration. Proc. Natl Acad. Sci. USA, 91, 2021-2025.
    • (1994) Proc. Natl Acad. Sci. USA , vol.91 , pp. 2021-2025
    • Panyutin, I.G.1    Hsieh, P.2
  • 25
    • 0029019745 scopus 로고
    • A pivotal role for the structure of the Holliday junction in DNA branch migration
    • Panyutin, I. G., Biswas, I. & Hsieh, P. (1995). A pivotal role for the structure of the Holliday junction in DNA branch migration. EMBO J. 14, 1819-1826.
    • (1995) EMBO J. , vol.14 , pp. 1819-1826
    • Panyutin, I.G.1    Biswas, I.2    Hsieh, P.3
  • 26
    • 0028968305 scopus 로고
    • Structure of a multisubunit complex that promotes DNA branch migration
    • Parsons, C. A., Stasiak, A., Bennett, R. J. & West, S. C. (1995a). Structure of a multisubunit complex that promotes DNA branch migration. Nature, 374, 375-378.
    • (1995) Nature , vol.374 , pp. 375-378
    • Parsons, C.A.1    Stasiak, A.2    Bennett, R.J.3    West, S.C.4
  • 27
    • 0028788048 scopus 로고
    • The E.coli RuvAB proteins branch migrate Holliday junctions through heterologous DNA sequences in a reaction facilitated by SSB
    • Parsons, C. A., Stasiak, A. & West, S. C. (1995b). The E.coli RuvAB proteins branch migrate Holliday junctions through heterologous DNA sequences in a reaction facilitated by SSB. EMBO J. 14, 5736-5744.
    • (1995) EMBO J. , vol.14 , pp. 5736-5744
    • Parsons, C.A.1    Stasiak, A.2    West, S.C.3
  • 28
    • 0023322696 scopus 로고
    • Simulation of double-stranded branch point migration
    • Robinson, B. H. & Seeman, N. C. (1987). Simulation of double-stranded branch point migration. Biophys. J. 51, 611-626.
    • (1987) Biophys. J. , vol.51 , pp. 611-626
    • Robinson, B.H.1    Seeman, N.C.2
  • 29
    • 0025985785 scopus 로고
    • The ATPase activity of RecA is needed to push the DNA strand exchange through heterologous regions
    • Rosselli, W. & Stasiak, A. (1991). The ATPase activity of RecA is needed to push the DNA strand exchange through heterologous regions. EMBO J. 10, 4391-4396.
    • (1991) EMBO J. , vol.10 , pp. 4391-4396
    • Rosselli, W.1    Stasiak, A.2
  • 30
    • 13144278270 scopus 로고
    • Pseudo-random sequence generator for 32-bit microprocessors
    • Schneier, B. (1992). Pseudo-random sequence generator for 32-bit microprocessors. Dr. Dobbs' J. 17, 34-40.
    • (1992) Dr. Dobbs' J. , vol.17 , pp. 34-40
    • Schneier, B.1
  • 32
    • 0029995337 scopus 로고    scopus 로고
    • Processing the Holliday junction in homologous recombination
    • Shinagawa, H. & Iwasaki, H. (1996). Processing the Holliday junction in homologous recombination. Trends Biochem. Sci. 21, 107-111.
    • (1996) Trends Biochem. Sci. , vol.21 , pp. 107-111
    • Shinagawa, H.1    Iwasaki, H.2
  • 34
    • 0022580389 scopus 로고
    • Mismatches in DNA double strands: Thermodynamic parameters and their correlation to repair efficiencies
    • Werntges, H., Steger, G., Riesner, D. & Fritz, H.-J. (1986). Mismatches in DNA double strands: Thermodynamic parameters and their correlation to repair efficiencies. Nucl. Acids Res. 14, 3773-3790.
    • (1986) Nucl. Acids Res. , vol.14 , pp. 3773-3790
    • Werntges, H.1    Steger, G.2    Riesner, D.3    Fritz, H.-J.4
  • 35
    • 0030602794 scopus 로고    scopus 로고
    • DNA helicases: New breeds of translocating motors and molecular pumps
    • West, S. C. (1996). DNA helicases: New breeds of translocating motors and molecular pumps. Cell, 86, 177-180.
    • (1996) Cell , vol.86 , pp. 177-180
    • West, S.C.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.