Structures of transgene loci in transgenic Arabidopsis plants obtained by particle bombardment: Junction regions can bind to nuclear matrices

Gene

Volumn 218, Issue 1-2, 1998, Pages 27-35

  Sawasaki, Tatsuya ^a   Takahashi, Misa ^a   Goshima, Naoki ^a   Morikawa, Hiromichi ^a  

^a HIROSHIMA UNIVERSITY   (Japan)

Author keywords

AT rich region; Hot spot; Integration; S MAR; Topoisomerase I; Transgene

Indexed keywords

CURVED DNA; DNA TOPOISOMERASE;

ARTICLE; BIOLISTIC TRANSFORMATION; CELL NUCLEUS MATRIX; CHROMOSOME; CONTROLLED STUDY; DNA INTEGRATION; DNA SEQUENCE; GENE LOCUS; GENE STRUCTURE; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SOUTHERN BLOTTING; TOBACCO; TRANSGENIC PLANT;

ARABIDOPSIS; BINDING SITES; CLONING, MOLECULAR; DNA, PLANT; GENETIC TECHNIQUES; PLANTS, GENETICALLY MODIFIED; PLANTS, TOXIC; SEQUENCE HOMOLOGY, NUCLEIC ACID; TOBACCO; TRANSGENES;

ARABIDOPSIS; EMBRYOPHYTA; NICOTIANA TABACUM;

EID: 0032544415     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1119(98)00388-6     Document Type: Article

References (33)

1. Altschul S.F., Gish W., Miller W., Myers E.W., Lipman D.J. Basic local alignment search tool. J. Mol. Biol. 215:1990;403-410.
2. Amati B., Pick L., Laroche T., Gasser S.M. Nuclear scaffold attachment stimulates, but is not essential for ARS activity in Saccharomyces cerevisiae: analysis of the Drosophila ftz SAR. EMBO J. 9:1990;4007-4016.
3. Avramova Z., SanMiguel P., Georgieva E., Bennetzen J.L. Matrix attachment regions and transcribed sequences within a long chromosomal continuum containing maize Adh1. Plant Cell. 7:1995;1667-1680.
4. Ausubel, F.M., Brent, R., Kingston, R.E., Moore, D.D., Seidman, J.G., Smith, J.A., Struhl, K., 1995. Current Protocols In Molecular Biology. Greene Publishing Associates and Wiley-Interscience, New York.
5. Been M.D., Burgss D.R., Champoux J.J. Nucleotide sequence preference at rat liver and wheat germ type I DNA topoisomerase breakage sites in duplex SV40 DNA. Nucleic Acids Res. 12:1984;3097-3114.
6. Bevanet al. Analysis of 1.9 Mb of contiguous sequence from chromosome 4 of Arabidopsis thaliana. Nature. 391:1998;485-488.
7. Brukner I., Sánchez R., Suck D., Pongor S. Sequence-dependent bending propensity of DNA as revealed by DNase I: parameters for trinucleotides. EMBO J. 14:1995;1812-1818.
8. Dietz A., Kay V., Schlake T., Landsmann J., Bode J. A plant scaffold-attached region detected close to a T-DNA integration site is active in mammalian cells. Nucleic Acids Res. 22:1994;2744-2751.
9. Gabrielian A., Pongor S. Correlation of intrinsic DNA curvature with DNA property periodicity. FEBS Lett. 393:1996;65-68.
10. Gabrielian A., Simoncsits A., Pongor S. Distribution of bending propensity in DNA sequences. FEBS Lett. 393:1996;124-130.
11. Gasser S.M., Laemmli U.K. Cohabitation of scaffold binding regions with upstream/enhancer elements of three developmentally regulated genes of D. melanogaster. Cell. 46:1986;521-530.
12. Gheysen G., Herman L., Breyne P., Gielen J., Van Montagu M., Depicker A. Cloning and sequence analysis of truncated T-DNA inserts from Nicotiana tabacum. Gene. 94:1990;155-163.
13. Hall G. Jr., Allen G.C., Loser D.S., Thompson W.F., Spinker S. Nuclear scaffolds and scaffold-attachment regions in higher plants. Proc. Natl. Acad. Sci. USA. 88:1991;9320-9324.
14. Jackson D.A., Bartlett J., Cook P.R. Sequences attaching loops of nuclear and mitochondrial DNA to underlying structures in human cells: the role of transcription units. Nucleic Acids Res. 24:1996;1212-1219.
15. Kikuchi S., Takaiwa F., Oono K. Variable copy number of DNA sequences in rice. Mol. Gen. Genet. 210:1987;373-380.
16. Mielke C., Maass K., Tümmler M., Bode J. Anatomy of highly expressing chromosomal sites targeted by retroviral vector. Biochemistry. 35:1996;2239-2252.
17. Milot E., Belmaaza A., Wallenburg J.C., Gusew N., Bradley W.E.C., Chartrand P. Chromosomal illegitimate recombination in mammalian cells is associated with intrinsically bent DNA elements. EMBO J. 11:1992;5063-5070.
18. Nagata T., Okada K., Takebe I., Matsui C. Delivery of tobacco mosaic virus RNA into plant protoplasts mediated by reverse-phase evaporation vesicles (liposomes). Mol. Gen. Genet. 184:1981;161-165.
19. Nishizawa M., Tanabe K., Takahashi T. DNA polymerase and DNA topoisomerases solubilized from nuclear matrices of regenerating rat livers. Biochem. Biophys. Res. Commun. 124:1984;917-924.
20. Ochman H., Gerber A.S., Hartl D.L. Genetic applications of an inverse polymerase chain reaction. Genetics. 120:1988;621-623.
21. Sambrook, J., Fritsch, E.F., Maniatis, T., 1989. Molecular Cloning: A Laboratory Manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
22. Sander M., Hsieh T.-S. Drosophila topoisomerase II double-strand DNA cleavage: analysis of DNA sequence homology at the cleavage site. Nucleic Acids Res. 13:1985;1057-1072.
23. Sawasaki T., Seki M., Anzai H., Irifune K., Morikawa H. Stable transformation of Arabidopsis with the bar gene using particle bombardment. Transgenic Res. 3:1994;279-286.
24. Schiestl R.H., Dominska M., Peters T.D. Transformation of Saccharomyces cerevisae with nonhomologus DNA: illegitimate integration of transforming DNA into yeast chromosomes and in vivo ligation of transforming DNA to mitochondrial DNA sequences. Mol. Cell. Biol. 13:1993;2697-2705.
25. Seki M., Shigemoto N., Komeda Y., Imamura J., Yamada Y., Morikawa H. Transgenic Arabidopsis thaliana plants obtained by particle-bombardment-mediated transformation. Appl. Microbiol. Biotechnol. 36:1991;228-230.
26. Sperry A.O., Blasquez V.C., Garrard W.T. Dysfunction of chromosomal loop attachment sites: Illegitimate recombination linked to matrix association regions and topoisomerase II. Proc. Natl. Acad. Sci. USA. 86:1989;5497-5501.
27. Snyder M., Buchman A.R., Davis R.W. Bent DNA at a yeast autonomously replicating sequence. Nature. 324:1986;87-89.
28. Sykes R.C., Lin D., Hwang S.J., Framson P.E., Chinault A.C. Yeast ARS function and nuclear matrix association coincide in a short sequence from the human HPRT locus. Mol. Gen. Gent. 212:1988;301-309.
29. Takahashi M., Morikawa H. High frequency stable transformation of Arabidopsis by particle bombardment. J. Plant Res. 109:1996;331-334.
30. Takano M., Egawa H., Ikeda J.-E., Wakasa K. The structure of integration sites in transgenic rice. Plant J. 11:1997;353-361.
31. Thorsness P.E., Fox T.D. Escape of DNA from mitochondria to the nucleus in Saccharomyces cerevisiae. Nature. 284:1990;426-430.
32. Wilkie T.M., Palmiter R.D. Analysis of the integrant in MyK-103 transgenic mice in which males fail to transmit the integrant. Mol. Cell. Biol. 7:1987;1646-1655.
33. Zhu J., Schiestl R.H. Topoisomerase I involvement in illegitimate recombination in Saccharomyces cerevisiae. Mol. Cell. Biol. 16:1996;1805-1812.