Topoisomerase I involvement in illegitimate recombination in Saccharomyces cerevisiae

Molecular and Cellular Biology

Volumn 16, Issue 4, 1996, Pages 1805-1812

  Zhu, Jie ^a   Schiestl, Robert H ^a  

^a HARVARD SCHOOL OF PUBLIC HEALTH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA TOPOISOMERASE; PLASMID DNA; RIBOSOME RNA;

ARTICLE; DNA FLANKING REGION; DNA RECOMBINATION; DNA SEQUENCE; ENZYME SPECIFICITY; FUNGAL GENETICS; GENE EXPRESSION; MOLECULAR CLONING; NONHUMAN; PRIORITY JOURNAL; SACCHAROMYCES CEREVISIAE; SEQUENCE HOMOLOGY; YEAST;

EID: 0029960067     PISSN: 02707306     EISSN: None     Source Type: Journal    
DOI: 10.1128/MCB.16.4.1805     Document Type: Article

References (34)

1. Amin, A. A., L. G. Beatty, and P. D. Sadowski. 1990. Synaptic intermediates promoted by the FLP recombinase. J. Mol. Biol. 214:55-72.
2. Andersen, H. A., E. Gocke, B. J. Bonven, O. F. Nielsen, and O. Westergaard. 1985. Topoisomerase I has a strong binding preference for a conserved hexadecameric sequence in the promoter region of the rRNA gene from Tetrahymena pyriformis. Nucleic Acids Res. 13:1543-1556.
3. Been, M. D., R. R. Burgess, and J. J. Champoux. 1984. Nucleotide sequence preference at rat liver and wheat germ type I topoisomerase breakage sites in duplex SV40 DNA. Nucleic Acids Res. 12:3097-3114.
4. Bjornsti, M. A., A. M. Knab, and P. Benedetti. 1994. Yeast Saccharomyces cerevisiae as a model to study the cytotoxic activity of the antitumor drug camptothecin. Cancer Chemother. Pharmacol. 34(Suppl):S1-S5.
5. Bullock, P., J. J. Champoux, and M. Botchan. 1985. Association of crossover points with topoisomerase I cleavage sites: a model for nonhomologous recombination. Science 230:954-958.
6. Champoux, J. J., and P. A. Bullock. 1988. Possible role for the eukaryotic type I topoisomerase in illegitimate recombination, p. 655-666. In R. Kucherlapati and G. R. Smith (ed.), Genetic recombination. American Society for Microbiology, Washington, D C.
7. Choder, M. 1991. A general topoisomerase I-dependent transcriptional repression in the stationary phase in yeast. Genes Dev. 5:2315-2326.
8. Denis, C. L., and E. T. Young. 1983. Isolation and characterization of the positive regulatory gene ADR1 from Saccharomyces cerevisiae. Mol. Cell. Biol. 3:360-370.
9. DiNardo, S., K. Voelkel, and R. Sternglanz. 1984. DNA topoisomerase II mutant of Saccharomyces cerevisiae: topoisomerase II is required for segregation of daughter molecules at the termination of DNA replication. Proc. Natl. Acad. Sci. USA 81:2616-2620.
10. Eng, W.-K., L. Faucette, R. K. Johnson, and R. Sternglanz. 1988. Evidence that DNA topoisomerase I is necessary for the cytotoxic effects of camptothecin. Mol. Pharmacol. 34:755-760.
11. Gangloff, S., M. R. Lieber, and R. Rothstein. 1994. Transcription, topoisomerase and recombination. Experientia 50:261-269.
12. Gietz, R. D., A. St. Jean, R. A. Woods, and R. H. Schiestl. 1992. Improved method for high efficiency transformation of intact yeast cells Nucleic Acids Res. 20:1425.
13. Gietz, R. D., and A. Sugino. 1988. New yeast-Escherichia coli shuttle vectors constructed with in vitro-mutagenized yeast genes lacking six-base-pair restriction sites. Gene 74:527-534.
14. Hatfull, G. F., and N. D. F. Grindley. 1988. Resolvases and DNA-invertases. a family of enzymes active in site-specific recombination, p. 357-396. In R. Kucherlapati and G. R. Smith (ed.), Genetic recombination. American Society for Microbiology, Washington, D C.
15. Hughes, R. E., G. F. Hatful, P. Rice, T. A. Steitz, and N. D. F. Grindley. 1990. Cooperativity mutants of the gamma delta resolvase identify an essential interdimer interaction. Cell 63:1331-1338.
16. Kim, R. A., and J. C. Wang. 1992. Identification of the yeast TOP3 gene product as a single strand-specific DNA topoisomerase. J. Biol Chem. 267: 17178-17185.
17. Kraft, R., J. Tardiff, K. S. Krauter, and L. A. Leinwand. 1988. Using miniprep plasmid DNA for sequencing double stranded templates with Sequenase. BioTechniques 6:544-545.
18. Landy, A. 1989. Dynamic, structural, and regulatory aspects of lambda site specific recombination. Annu. Rev. Biochem. 58:913-949.
19. Levin, N. A., M. Bjornsti, and G. R. Fink. 1993. A novel mutation in DNA topoisomerase I of yeast causes DNA damage and RAD9-dependent cell cycle arrest. Genetics 133:799-814.
20. Porter, S. E., and J. J. Champoux. 1989. Mapping in vivo topoisomerase I sites on simian virus 40 DNA asymmetric distribution of sites on replicating molecules. Mol. Cell. Biol. 9:541-550
21. Roth, D., and J. Wilson. 1988. Illegitimate recombination in mammalian cells, p. 621-653. In R. Kucherlapati and G R. Smith (ed.), Genetic recombination. American Society for Microbiology, Washington, D.C.
22. Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory, Cold Spring Harbor, N Y.
23. Schiestl, R. H., M. Dorninska, and T. D. Petes. 1993. Transformation of Saccharomyces cerevisiae with nonhomologous DNA: illegitimate integration of transforming DNA into yeast chromosomes and in vivo ligation of transforming DNA to mitochondrial DNA sequences. Mol. Cell Biol. 13:2697-2705.
24. Schiestl, R. H., and R. D. Gietz. 1989 High efficiency transformation of intact yeast cells by single stranded nucleic acids as carrier. Curr Genet. 16:339-346.
25. Schiestl, R. H., and T. D. Petes. 1991. Integration of DNA fragments by illegitimate recombination in Saccharomyces cerevisiae. Proc Natl. Acad Sci. USA 88:7585-7589.
26. Schiestl, R. H., J. Zhu, and T. D. Petes. 1994. Effect of mutations in genes affecting homologous recombination on restriction enzyme-mediated and illegitimate recombination in Saccharomyces cerevistae Mol. Cell Biol. 14: 4493-4500.
27. Sherman, F., G. R. Fink, and J. B. Hicks. 1986. Methods in yeast genetics Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
28. Shuman, S. 1989. Vaccinia DNA topoisomerase I promotes illegitimate recombination in Escherichia coli. Proc. Natl. Acad Sci. USA 86:3489-3493
29. Shuman, S. 1991. Recombination mediated by vaccinia virus DNA topoisomerase I in Escherichia coli is sequence specific Proc. Natl. Acad. Sci. USA 88:10104-10108.
30. Tanizawa, A., K. W. Kohn, and Y. Pommier. 1993. Induction of cleavage in topoisomerase I c-DNA by topoisomerase I enzyme from calf thymus and wheat germ in the presence and absence of camptothecin. Nucleic Acids Res 21:5157-5166.
31. Thrash, C., A. T. Bankier, B. G. Barrell, and R. Sternglans. 1985. Cloning, characterization, and sequence of the yeast DNA topoisomerase I gene. Proc. Natl. Acad Sci. USA 82:4374-4378.
32. Wallis, J. W., G. Chrebet, G. Brodsky, M. Rolfe, and R. Rothstein. 1989 A hyper-recombination mutation in S. cerevisiae identifies a novel eukaryotic topoisomerase. Cell 58:409-419.
33. Wang, H. P., and C. E. Rogler. 1991. Topoisomerase I-mediated integration of hepadnavirus DNA in vivo. J. Virol. 65:2381-2392
34. Wang, J. C. 1985. DNA topoisomerases. Annu. Rev. Biochem. 54:665-697.