메뉴 건너뛰기




Volumn 190, Issue 1, 1997, Pages 17-26

Polypurine/polypyrimidine sequences as cis-acting transcriptional regulators

Author keywords

Coding strand; DNA sequence analysis; Down regulation; Expression vectors; Promoter; Repetitive DNA; Triplex; Upstream activating sequences; Yeast genome

Indexed keywords

BETA GALACTOSIDASE; CIS ACTING ELEMENT; DNA; PURINE; PYRIMIDINE; REPETITIVE DNA;

EID: 0030999532     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1119(97)00034-6     Document Type: Conference Paper
Times cited : (29)

References (47)
  • 1
    • 0343188715 scopus 로고
    • Nucleosome disruption in transcription
    • Adams, C.C. and Workman, J.L. (1993) Nucleosome disruption in transcription. Cell 29, 609-622.
    • (1993) Cell , vol.29 , pp. 609-622
    • Adams, C.C.1    Workman, J.L.2
  • 2
    • 0027501498 scopus 로고
    • Promoter resurrection by activators - A minireview
    • Adhya, S., Gottesman, M., Garges, S. and Oppenheim, A. (1993) Promoter resurrection by activators - a minireview. Gene 132, 1-6.
    • (1993) Gene , vol.132 , pp. 1-6
    • Adhya, S.1    Gottesman, M.2    Garges, S.3    Oppenheim, A.4
  • 3
    • 0027166716 scopus 로고
    • GAL4 disrupts a repressing nucleosome during activation of GAL1 transcription in vivo
    • Axelford, J.D., Reagan, M.S. and Majors, J. (1993) GAL4 disrupts a repressing nucleosome during activation of GAL1 transcription in vivo. Genes Dev. 7, 857-869.
    • (1993) Genes Dev. , vol.7 , pp. 857-869
    • Axelford, J.D.1    Reagan, M.S.2    Majors, J.3
  • 4
    • 0026518648 scopus 로고
    • Survey of human and rat microsatellites
    • Beckman, J.S. and Weber, J.L. (1992) Survey of human and rat microsatellites. Genomics 12, 627-631.
    • (1992) Genomics , vol.12 , pp. 627-631
    • Beckman, J.S.1    Weber, J.L.2
  • 5
    • 0028931130 scopus 로고
    • An overabundance of long oligopurine tracts occurs in the genome of simple and complex eukaryotes
    • Behe, M.J. (1995) An overabundance of long oligopurine tracts occurs in the genome of simple and complex eukaryotes. Nucleic Acids Res. 23, 689-695.
    • (1995) Nucleic Acids Res. , vol.23 , pp. 689-695
    • Behe, M.J.1
  • 6
    • 0011157637 scopus 로고
    • Intramolecular DNA triple helix and regulation of gene expression
    • Sarma, R.H. and Sarma, M.H. (Eds.), Adenine Press, Schenectady, NY
    • Brahmachari, S.K. and Sarkar, P.S. (1994) Intramolecular DNA triple helix and regulation of gene expression, In: Sarma, R.H. and Sarma, M.H. (Eds.), Structural Biology: The State of the Art, Vol. 2. Adenine Press, Schenectady, NY, pp. 75-85.
    • (1994) Structural Biology: The State of the Art , vol.2 , pp. 75-85
    • Brahmachari, S.K.1    Sarkar, P.S.2
  • 7
    • 0342314566 scopus 로고
    • Unusual DNA structures: Sequence requirements and role in transcriptional control
    • Sarma, R.H. and Sarma, M.H. (Eds.), DNA Protein Complexes & Proteins. Adenine Press, Schenectady, NY
    • Brahmachari, S.K., Ramesh, N., Shouche, Y.S., Mishra, R.K., Bagga, R. and Meera, G. (1990) Unusual DNA structures: sequence requirements and role in transcriptional control, In: Sarma, R.H. and Sarma, M.H. (Eds.), Structure & Methods, Volume 2: DNA Protein Complexes & Proteins. Adenine Press, Schenectady, NY, pp. 33-49.
    • (1990) Structure & Methods , vol.2 , pp. 33-49
    • Brahmachari, S.K.1    Ramesh, N.2    Shouche, Y.S.3    Mishra, R.K.4    Bagga, R.5    Meera, G.6
  • 10
    • 0024847343 scopus 로고
    • Ribonucleoprotein and protein factors bind to a H-DNA forming c-myc DNA element: Possible regulation of the c-myc gene
    • Davis, T.L., Firulli, B. and Kinniburgh, A.J. (1989) Ribonucleoprotein and protein factors bind to a H-DNA forming c-myc DNA element: possible regulation of the c-myc gene. Proc. Natl. Acad. Sci. USA 86, 9682-9686.
    • (1989) Proc. Natl. Acad. Sci. USA , vol.86 , pp. 9682-9686
    • Davis, T.L.1    Firulli, B.2    Kinniburgh, A.J.3
  • 11
    • 0021760092 scopus 로고
    • A comprehensive set of sequence analysis programs for the VAX
    • Devereux J., Haeberli, P. and Smithies, O. (1984) A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res. 12, 387-395.
    • (1984) Nucleic Acids Res. , vol.12 , pp. 387-395
    • Devereux, J.1    Haeberli, P.2    Smithies, O.3
  • 12
    • 0027715886 scopus 로고
    • Stability of triple helices containing RNA and DNA strands: Experimental and molecular modelling studies
    • Escude, C., François, J., Sun, J., Ott, G., Sprinzl, M., Garestier, T. and Hélène, C. (1993) Stability of triple helices containing RNA and DNA strands: experimental and molecular modelling studies. Nucleic Acids Res. 21, 5547-5553.
    • (1993) Nucleic Acids Res. , vol.21 , pp. 5547-5553
    • Escude, C.1    François, J.2    Sun, J.3    Ott, G.4    Sprinzl, M.5    Garestier, T.6    Hélène, C.7
  • 13
    • 0024261880 scopus 로고
    • Statistical positioning of nucleosomes by specific protein binding to an upstream activating sequence in yeast
    • Fedor, M.J., Lue, N.F. and Kornberg, R.D. (1988) Statistical positioning of nucleosomes by specific protein binding to an upstream activating sequence in yeast. J. Mol. Biol. 204, 109-127.
    • (1988) J. Mol. Biol. , vol.204 , pp. 109-127
    • Fedor, M.J.1    Lue, N.F.2    Kornberg, R.D.3
  • 14
    • 0024453603 scopus 로고
    • Drosophila nuclear proteins bind to a region of alternating C and T residues in gene promoters
    • Gilmour, D.S., Thomas, G.H. and Elgin, S.C.R. (1989) Drosophila nuclear proteins bind to a region of alternating C and T residues in gene promoters. Science 245, 1487-1490.
    • (1989) Science , vol.245 , pp. 1487-1490
    • Gilmour, D.S.1    Thomas, G.H.2    Elgin, S.C.R.3
  • 15
    • 0025357581 scopus 로고
    • Optimal heat induced expression of the Drosophila hsp26 gene requires a promoter sequence containing (CT)n.(GA)n repeats
    • Glaser, R.G., Thomas, G.H., Siegfried, E., Elgin, S.E.R. and Lis, J.T. (1990) Optimal heat induced expression of the Drosophila hsp26 gene requires a promoter sequence containing (CT)n.(GA)n repeats. J. Mol. Biol. 211, 751-767.
    • (1990) J. Mol. Biol. , vol.211 , pp. 751-767
    • Glaser, R.G.1    Thomas, G.H.2    Siegfried, E.3    Elgin, S.E.R.4    Lis, J.T.5
  • 16
    • 0028929024 scopus 로고
    • A long polypurine.Pyrimidine homoplolymeric tract acts as a transcriptional diode
    • Grabczyk, E. and Fishman, M.C. (1995) A long polypurine.pyrimidine homoplolymeric tract acts as a transcriptional diode. J. Biol. Chem. 270, 1791-1797.
    • (1995) J. Biol. Chem. , vol.270 , pp. 1791-1797
    • Grabczyk, E.1    Fishman, M.C.2
  • 17
    • 0009355836 scopus 로고
    • Fusion of Escherichia coli lacZ to the cytochrome c gene of Saccharomyces cerevisiae
    • Guarente, L. and Ptashne, M. (1981) Fusion of Escherichia coli lacZ to the cytochrome c gene of Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 78, 2199-2203.
    • (1981) Proc. Natl. Acad. Sci. USA , vol.78 , pp. 2199-2203
    • Guarente, L.1    Ptashne, M.2
  • 18
    • 0020359805 scopus 로고
    • A GAL10-CYC1 hybrid yeast promoter identifies the GAL4 regulatory region as an upstream site
    • Guarente, L., Yocum, R.R. and Gifford, P. (1982) A GAL10-CYC1 hybrid yeast promoter identifies the GAL4 regulatory region as an upstream site. Proc. Natl. Acad. Sci. USA 79, 7410-7414.
    • (1982) Proc. Natl. Acad. Sci. USA , vol.79 , pp. 7410-7414
    • Guarente, L.1    Yocum, R.R.2    Gifford, P.3
  • 19
    • 0024510279 scopus 로고
    • Topology and formation of triple stranded DNA
    • Htun, H. and Dahlberg, J.E. (1989) Topology and formation of triple stranded DNA. Science 243, 1571-1576.
    • (1989) Science , vol.243 , pp. 1571-1576
    • Htun, H.1    Dahlberg, J.E.2
  • 20
    • 0024300366 scopus 로고
    • The S1-sensitive form of d(C-T)n.D(A-G)n: Chemical evidence for a three stranded structure
    • Johnston, B.H. (1988) The S1-sensitive form of d(C-T)n.d(A-G)n: chemical evidence for a three stranded structure. Science 241, 1800-1804.
    • (1988) Science , vol.241 , pp. 1800-1804
    • Johnston, B.H.1
  • 21
  • 22
    • 0027483012 scopus 로고
    • Co-crystal structure of TBP recognising the minor groove of a TATA element
    • Kim, J.L., Nikolov, D.B. and Burley, S.K. (1993a) Co-crystal structure of TBP recognising the minor groove of a TATA element. Nature 365, 520-527.
    • (1993) Nature , vol.365 , pp. 520-527
    • Kim, J.L.1    Nikolov, D.B.2    Burley, S.K.3
  • 23
    • 0027504913 scopus 로고
    • Crystal structure of a yeast TBP/TATA box complex
    • Kim, Y., Geiger, H.J., Hahn, S. and Sigler, P.B. (1993b) Crystal structure of a yeast TBP/TATA box complex. Nature 365, 512-520.
    • (1993) Nature , vol.365 , pp. 512-520
    • Kim, Y.1    Geiger, H.J.2    Hahn, S.3    Sigler, P.B.4
  • 24
    • 0024425127 scopus 로고
    • A cis acting transcription element of the c-myc gene can assume a H-DNA conformation
    • Kinniburgh, A.J. (1989) A cis acting transcription element of the c-myc gene can assume a H-DNA conformation. Nucleic Acids Res. 17, 7771-7778.
    • (1989) Nucleic Acids Res. , vol.17 , pp. 7771-7778
    • Kinniburgh, A.J.1
  • 25
    • 0023951264 scopus 로고
    • Magnesium ion dependent, novel triple-helix structure formed by homopurine-homopyrimidine sequences in supercoiled plasmid DNA
    • Kohwi, Y. and Kohwi-Shigematsu, T. (1988) Magnesium ion dependent, novel triple-helix structure formed by homopurine-homopyrimidine sequences in supercoiled plasmid DNA. Proc. Natl. Acad. Sci. USA 85, 3781-3785.
    • (1988) Proc. Natl. Acad. Sci. USA , vol.85 , pp. 3781-3785
    • Kohwi, Y.1    Kohwi-Shigematsu, T.2
  • 26
    • 0026290175 scopus 로고
    • Altered gene expression correlates with DNA structure
    • Kohwi, Y. and Kohwi-Shigematsu, T. (1991) Altered gene expression correlates with DNA structure. Genes Dev. 5, 2547-2554.
    • (1991) Genes Dev. , vol.5 , pp. 2547-2554
    • Kohwi, Y.1    Kohwi-Shigematsu, T.2
  • 27
    • 0026610736 scopus 로고
    • Intramolecular dG.dG.dC triplex detected in E. coli cells
    • Kohwi, Y., Malkhosyan, S.R. and Kohwi-Sigematsu, T. (1992) Intramolecular dG.dG.dC triplex detected in E. coli cells. J. Mol. Biol. 223, 817-822.
    • (1992) J. Mol. Biol. , vol.223 , pp. 817-822
    • Kohwi, Y.1    Malkhosyan, S.R.2    Kohwi-Sigematsu, T.3
  • 30
    • 0027335550 scopus 로고
    • (CT)n.(GA)n repeats and heat shock elements have distinct roles in chromatin structure and transcription activator of the Drosophila hsp26 gene
    • Lu, Q., Wallrath, L.L., Gransek, H. and Elgin, S.C.R. (1993) (CT)n.(GA)n repeats and heat shock elements have distinct roles in chromatin structure and transcription activator of the Drosophila hsp26 gene. Mol. Cell. Biol. 13, 2802-2814.
    • (1993) Mol. Cell. Biol. , vol.13 , pp. 2802-2814
    • Lu, Q.1    Wallrath, L.L.2    Gransek, H.3    Elgin, S.C.R.4
  • 33
    • 0027742525 scopus 로고
    • Nucleosome disruption by transcription factor binding in yeast
    • Morse, R.H. (1994) Nucleosome disruption by transcription factor binding in yeast. Science 265, 1563-1566.
    • (1994) Science , vol.265 , pp. 1563-1566
    • Morse, R.H.1
  • 34
    • 0028296185 scopus 로고
    • Mining treasures from junk DNA
    • Nowak, R. (1994) Mining treasures from junk DNA. Science 263, 608.
    • (1994) Science , vol.263 , pp. 608
    • Nowak, R.1
  • 35
    • 0025776150 scopus 로고
    • Local supercoiled-stabilized DNA structures
    • Paleček, E. (1991) Local supercoiled-stabilized DNA structures. Crit. Rev. Biochem. Mol. Biol. 26, 151-226.
    • (1991) Crit. Rev. Biochem. Mol. Biol. , vol.26 , pp. 151-226
    • Paleček, E.1
  • 36
    • 0025225502 scopus 로고
    • Induction of RNA-stabilized DNA conformers by transcription of an immunoglobulin switch region
    • Reaban, M.E. and Griffin, J.A. (1990) Induction of RNA-stabilized DNA conformers by transcription of an immunoglobulin switch region. Nature 348, 342-344.
    • (1990) Nature , vol.348 , pp. 342-344
    • Reaban, M.E.1    Griffin, J.A.2
  • 38
    • 0027089978 scopus 로고
    • Stability and properties of double and triple helices: Dramatic effects of RNA and DNA back-bone composition
    • Roberts, R.W. and Crothers, D.M. (1992) Stability and properties of double and triple helices: dramatic effects of RNA and DNA back-bone composition. Science 258, 1463-1466.
    • (1992) Science , vol.258 , pp. 1463-1466
    • Roberts, R.W.1    Crothers, D.M.2
  • 40
    • 0026437556 scopus 로고
    • Intramolecular triplex potential sequence within a gene down regulates its expression in vivo
    • Sarkar, P.S. and Bramhachari, S.K. (1992) Intramolecular triplex potential sequence within a gene down regulates its expression in vivo. Nucleic Acids Res. 20, 5713-5718.
    • (1992) Nucleic Acids Res. , vol.20 , pp. 5713-5718
    • Sarkar, P.S.1    Bramhachari, S.K.2
  • 41
    • 0028967381 scopus 로고
    • Conservation and evolution of (CT)n/(GA)n microsatellite sequences at orthologous positions in diverse mammalian genomes
    • Stallings, R.L. (1995) Conservation and evolution of (CT)n/(GA)n microsatellite sequences at orthologous positions in diverse mammalian genomes. Genomics 25, 107-113.
    • (1995) Genomics , vol.25 , pp. 107-113
    • Stallings, R.L.1
  • 42
    • 0343188708 scopus 로고
    • Totally asymmetric transcription of coliphage T7 in vivo: Correlation with poly G binding sites
    • Summers, W.C. and Szybalski, W. (1968) Totally asymmetric transcription of coliphage T7 in vivo: correlation with poly G binding sites. Virology 34, 9-16.
    • (1968) Virology , vol.34 , pp. 9-16
    • Summers, W.C.1    Szybalski, W.2
  • 43
    • 0013997435 scopus 로고
    • Pyrimidine clusters on the transcribing strand of DNA and their possible role in the initiation of RNA synthesis
    • Szybalski, W., Kubinski, H. and Sheldrick, P. (1966) Pyrimidine clusters on the transcribing strand of DNA and their possible role in the initiation of RNA synthesis. Cold Spring Harbor Symp. Quant. Biol. 31, 123-127.
    • (1966) Cold Spring Harbor Symp. Quant. Biol. , vol.31 , pp. 123-127
    • Szybalski, W.1    Kubinski, H.2    Sheldrick, P.3
  • 44
    • 0026650253 scopus 로고
    • Why bend DNA?
    • Travers, A.A. (1992) Why bend DNA? Cell 69, 573.
    • (1992) Cell , vol.69 , pp. 573
    • Travers, A.A.1
  • 46
    • 0028055116 scopus 로고
    • ATP-dependent nucleosome disruption of a heat-shock promoter mediated by binding of GAGA transcription factor
    • Tsukiyama, T., Becker, P.B. and Wu, C. (1994) ATP-dependent nucleosome disruption of a heat-shock promoter mediated by binding of GAGA transcription factor. Nature 367, 525-532.
    • (1994) Nature , vol.367 , pp. 525-532
    • Tsukiyama, T.1    Becker, P.B.2    Wu, C.3
  • 47
    • 0023796273 scopus 로고
    • The chemistry and biology of unusual DNA structure adopted by oligopurine • oligopyrimidine sequences
    • Wells, R.D., Collier, D.A., Hanvey, C.J, Shimiju, M. and Wohlrab, F. (1988) The chemistry and biology of unusual DNA structure adopted by oligopurine • oligopyrimidine sequences. FASEB J. 2, 2939-2949.
    • (1988) FASEB J. , vol.2 , pp. 2939-2949
    • Wells, R.D.1    Collier, D.A.2    Hanvey, C.J.3    Shimiju, M.4    Wohlrab, F.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.