The genomic structure of the chicken ICSBP gene and its transcriptional regulation by chicken interferon

Gene

Volumn 210, Issue 2, 1998, Pages 265-275

  Dosch, E ^a   Zoller B ^a   Redmann Muller I ^a   Nanda, I ^a   Schmid, M ^a   Viciano Gofferge, A ^a   Jungwirth, C ^a  

^a UNIVERSITY OF WÜRZBURG   (Germany)

Author keywords

Avian; DNA binding protein; Evolution; Interferon regulatory factor

Indexed keywords

BINDING PROTEIN; CIS ACTING ELEMENT; DNA; INTERFERON; MESSENGER RNA; RECOMBINANT GAMMA INTERFERON;

ANIMAL CELL; ARTICLE; CHICKEN; CODON; CONSENSUS SEQUENCE; CONTROLLED STUDY; DNA SEQUENCE; EXON; FLUORESCENCE IN SITU HYBRIDIZATION; GENE MAPPING; GENE STRUCTURE; GENETIC TRANSFECTION; MICROCHROMOSOME; NONHUMAN; PRIORITY JOURNAL; SEQUENCE HOMOLOGY; TRANSCRIPTION INITIATION; TRANSCRIPTION REGULATION; TRANSLATION INITIATION;

ANIMALS; BASE SEQUENCE; CHICKENS; CHROMOSOME MAPPING; CLONING, MOLECULAR; CONSENSUS SEQUENCE; DNA, COMPLEMENTARY; INTERFERON REGULATORY FACTORS; INTERFERONS; MOLECULAR SEQUENCE DATA; PROMOTER REGIONS (GENETICS); PROTEIN-TYROSINE KINASES; REPRESSOR PROTEINS; SIMPLEXVIRUS; TRANSCRIPTION, GENETIC;

ANIMALIA; AVES; GALLUS GALLUS; MAMMALIA; MURINAE;

EID: 0032515926     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1119(98)00063-8     Document Type: Article

References (52)

1. Anon., 1991. Program Manual; Version 7. Genetics Computer Group, Madison, WI.
2. Anon., 1995. The DIG System User's Guide for Filter Hybridization. Boehringer Mannheim, Mannheim.
3. Au W.-C., Moore P.A., Lowther P., Juang Y.-T., Pitha P.M. Identification of a member of the interferon regulatory factor family that binds to the interferon-stimulated response element and activates expression of interferon-induced genes. Proc. Natl. Acad. Sci. USA. 92:1995;11657-11661.
4. Ausubel, F.M., Brent, R., Kingston, R.E., Moore, D.D., Seidmann, J.G. (Eds), 1989. Current Protocols in Molecular Biology. Greene Publishing and Wiley Interscience, New York.
5. Bovolenta C., Driggers P.H., Marks M.S., Medin J.A., Politis J.A., Vogel S.N., Levy D.E., Sakaguchi K., Appella E., Coligan J.E., Ozato K. Molecular interactions between interferon consensus sequence binding protein and members of the interferon regulatory factor family. Proc. Natl. Acad. Sci. USA. 91:1994;5046-5050.
6. Brawerman, G., 1974. The isolation of messenger RNA from mammalian cells. In: Moldave, K., Grossman, L. (Eds.), Methods in Enzymology. Academic Press, London, pp. 605-612.
7. Colwell G., Li B., Forrest D., Brackenbury R. Conserved regulatory elements in the promoter region of the N-CAM gene. Genomics. 14:1992;875-882.
8. Copertino D.W., Jenkinson S., Jones F.S., Edelman G.M. Structural and functional similarities between the promoters for mouse tenascin and chicken cytotactin. Proc. Natl. Acad. Sci. USA. 92:1995;2131-2135.
9. Damore M.A., Omori S.A., Well R. IFN-γ induces the κ intron enhancer via an IFN-stimulated response element. J. Immunol. 156:1996;2451-2457.
10. Darnell J.E. Jr., Kerr I.M., Stark G.M. Jak-STAT pathways and transcriptional activation in response to IFNs and other extracellular signaling proteins. Science. 264:1994;1415-1421.
11. Decker T., Kovarik P., Meinke A. GAS elements: a few nucleotides with a major impact on cytokine-induced gene expression. J. Interferon Cytokine Res. 17:1997;121-134.
12. Decker T., Lew D.J., Darnell J.E. Jr. Two distinct alpha-interferon-dependent signal transduction pathways may contribute to activation of transcription of the guanylate-binding protein gene. Mol. Cell Biol. 11:1991;5147-5153.
13. Digby M.R., Lowenthal J.W. Cloning and expression of the chicken interferon-γ gene. J. Interferon Cytokine Res. 15:1996;939-945.
14. Drew P.D., Franzoso G., Becker K.G., Bours V., Carlson L.M., Siebenlist U., Ozato K. NF kappa B and interferon regulatory factor 1 physically interact and synergistically induce major histocompatibility class I gene expression. J. Interferon Cytokine Res. 15:1995;1037-1045.
15. Driggers P.H., Ennist D.L., Gleason S.L., Mak W.H., Marks M.S., Levi B.Z., Flanagan J.R., Apella E., Ozato K. An interferon γ-regulated protein that binds the interferon-inducible enhancer element of major histocompatibility complex class I genes. Proc. Natl. Acad. Sci. USA. 87:1990;3743-3747.
16. Fechheimer M., Boylan J.F., Parker S., Sisken J.E., Patel G.L., Zimmer S.G. Transfection of mammalian cells with plasmid DNA by scrape loading and sonication loading. Proc. Natl. Acad. Sci. USA. 84:1987;8463-8467.
17. Feinberg A.P., Vogelstein B. A technique for radiolabeling DNA endonuclease fragments to high specific activity. Anal. Biochem. 132:1983;6-13.
18. Friedman R.L., Manly S.P., McMahon M., Kerr I.M., Stark G.R. Transcriptional and posttranscriptional regulation of interferon-induced gene expression in human cells. Cell. 38:1984;745-755.
19. Frohman M.A. Rapid amplification of complementary DNA ends for generation of full-length complementary DNAs: thermal RACE. Methods Enzymol. 218:1993;340-356.
20. Grant C.E., Vasa M.Z., Deeley R.G. cIRF-3, a new member of the interferon regulatory factor (IRF) family that is rapidly and transiently induced by dsRNA. Nucleic Acids Res. 23:1995;2137-2146.
21. Harada H., Fujita T., Miyamoto M., Kimura Y., Maruyama M., Furia A., Miyata T., Taniguchi T. Structurally similar but functionally distinct factors, IRF-1 and IRF-2, bind to the same regulatory elements of IFN and IFN-inducible genes. Cell. 58:1989;729-739.
22. Harada H., Takahashi E., Itoh S., Harada K., Hori T.A., Taniguchi T. Structure and regulation of the human interferon regulatory factor 1 (IRF-1) and IRF-2 genes: implications for a gene network in the interferon system. Mol. Cell Biol. 14:1994;1500-1509.
23. Hatina V.J., Kralova J., Jansa P. Identification of an intragenic interferon-stimulated response element sequence of the mouse class I major histocompatibility complex H-2Kb gene. Exp. Clin. Immunogenet. 13:1996;55-60.
24. Holtschke T., Lohler J., Kanno Y., Fehr T., Giese N., Rosenbauer F., Lou J., Knobeloch K.P., Gabriele L., Waring J.F., Bachmann M.F., Zinkernagel R.M., Morse H.C.r., Ozato K., Horak I. Immunodeficiency and chronic myelogenous leukemia-like syndrome in mice with a targeted mutation of the ICSBP gene. Cell. 87:1996;307-317.
25. Israel A., Akinori K., Fournier A., Fellous M., Kourilsky P. Interferon response sequence potentiate activity of an enhancer in the promoter region of a mouse H-2 gene. Nature. 322:1986;743-746.
26. Johnson D.R., Pober J.S. HLA class I heavy-chain gene promoter elements mediating synergy between tumor necrosis factor and interferons. Mol. Cell Biol. 14:1994;1322-1332.
27. Jones F.S., Crossin K.L., Cunningham B.A., Edelman G.M. Identification and characterization of the promoter for the cytotactin gene. Proc. Natl. Acad. Sci. USA. 87:1990;6497-6501.
28. Jungwirth C., Rebbert M., Ozato K., Degen H.J., Schultz U., Dawid I.B. Chicken interferon consensus sequence-binding protein (ICSBP) and interferon regulatory factor (IRF)1 genes reveal evolutionary conservation in the IRF gene family. Proc. Natl. Acad. Sci. USA. 92:1995;3105-3109.
29. Kanno Y., Kozak C.A., Schindler C., Driggers P.H., Ennist D.L., Gleason S.L., Darnell J.E. Jr., Ozato K. The genomic structure of the murine ICSBP gene reveals the presence of the gamma interferon-responsive element, to which an ISGF3 alpha subunit (or similar) molecule binds. Mol. Cell Biol. 13:1993;3951-3963.
30. Korber B., Mermod N., Hood L., Stroynowski I. Regulation of gene expression by interferons: control of H-2 promoter response. Science. 239:1988;1302-1306.
31. Lichter P., Tang C.J., Call K., Hermanson G., Evans G.A., Housman D., Ward D.C. High-resolution mapping of human chromosome 11 by in situ hybridization with cosmid clones. Science. 247:1990;64-69.
32. Lowenthal J.W., Digby M.R., York J.J. Production of interferon-γ by chicken T cells. J. Interferon Cytokine Res. 15:1995;933-938.
33. Luckow B., Schütz G. CAT constructions with multiple unique restriction sites for the functional analysis of eukaryotic promoters and regulatory elements. Nucleic Acids Res. 15:1987;5490.
34. Marienfeld R., Nanda I., Zöller B., Schmid M., Rebbert M., Jungwirth C. Cloning of chicken IRF-2 cDNA. Expression and mapping of the IRF-2 gene. J. Interferon Cytokine Res. 17:1997;219-227.
35. Miyamoto M., Fujita T., Kimura Y., Maruyama M., Harada H., Sudo Y., Miyata M., Taniguchi T. Regulated expression of a gene encoding a nuclear factor, IRF-1, that specifically binds to IFN-beta gene regulatory elements. Cell. 54:1988;903-913.
36. Nanda I., Tanaka T., Schmid M. The intron-containing ribosomal protein-encoding genes L5, L7a and L37a are unlinked in chicken. Gene. 170:1996;159-164.
37. Ohmori Y., Hamilton T.A. Cooperative interaction between interferon (IFN) stimulus response element and κB sequence motifs controls IFN-γ and lipopolysaccharide-stimulated transcription from the murine IP-IO promoter. J. Biol. Chem. 268:1993;6677-6688.
38. Rutherford M.N., Hannigan G.E., Williams B.R.G. Interferon-induced binding of nuclear factors to promoter elements of the 2′-5′A synthetase gene. EMBO J. 7:1988;751-759.
39. Schultz U., Rinderle C., Sekellick M.J., Marcus P.I., Staeheli P. Recombinant chicken interferon from Escherichia coli and transfected COS cells is biologically active. Eur. J. Biochem. 229:1995;73-76.
40. Sanger F., Nicklen S., Coulson A.R. DNA sequencing with chain-terminating inhibitions. Proc. Natl. Acad. Sci. USA. 74:1977;5463-5467.
41. Sambrook, J., Fritsch, E.F., Maniatis, T., 1989. Molecular Cloning: A Laboratory Manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
42. Schumacher B., Bernasconi D., Schultz U., Staeheli P. The chicken Mx promoter contains an ISRE motif and confers interferon inducibility to a reporter gene in chick and monkey cells. Virology. 203:1994;144-148.
43. Seegert D., Strehlow I., Klose B., Levy D.E., Schindler C., Decker T. A novel interferon-alpha-regulated, DNA-binding protein participates in the regulation of the IFP53/tryptophanyl-tRNA synthetase gene. J. Biol. Chem. 269:1994;8590-8595.
44. Sekellick M.J., Ferrandindo A.F., Hopkins D.A., Marcus P.I. Chicken interferon gene: cloning, expression and analysis. J. Interferon Res. 14:1994;71-79.
45. Sims S.H., Cha Y., Romine M.F., Gao P.Q., Gottlieb K., Deisseroth A.B. A novel interferon-inducible domain: structural and functional analysis of the human interferon regulatory factor 1 gene promoter. Mol. Cell. Biol. 13:1993;690-702.
46. Sugita K., Miyazaki J.I., Appella E., Ozato K. Interferons increase transcription of a major histocompatibility class I gene via a 5′ interferon consensus sequence. Mol. Cell. Biol. 7:1987;2625-2630.
47. Tanaka N., Taniguchi T. Cytokine gene regulation: regulatory cis-elements and DNA binding factors involved in the interferon system. Adv. Immunol. 52:1992;263-281.
48. Thornton A.M., Buller R.M.L., DeVico A.L., Wang I.-M., Ozato K. Inhibition of human immunodeficiency virus type I and vaccinia virus infection by a dominant negative factor of the interferon regulatory factor family expressed in monocytic cells. Proc. Natl. Acad. Sci. USA. 87:1996;3743-3787.
49. van de Klundert F.A., van Eldik G.J., Pieper F.R., Jansen H.J., Bloemendal H. Identification of two silencers flanking an AP-1 enhancer in the vimentin promoter. Gene. 122:1992;337-343.
50. Veals S.A., Schindler C., Leonard D., Fu X.-Y., Aebersold R., Darnell J.E. Jr., Levy D.E. Subunit of an α-interferon responsible transcription factor is related to interferon regulatory factor and Myb families of DNA-binding proteins. Mol. Cell Biol. 12:1992;3315-3324.
51. Weisz A., Marx P., Sharf R., Apella E., Driggers P.H., Ozato K., Levi B.-Z. Human interferon consensus sequence binding protein is a negative regulator of enhancer elements common to interferon-inducible genes. J. Biol. Chem. 267:1992;25589-25596.
52. Zöller B., Ozato K., Kroemer G., Auffray C., Jungwirth C. Interferon induction of chicken MHC class I gene expression: phylogenetic conservation of the interferon-responsive element. Virology. 191:1992;141-149.