메뉴 건너뛰기




Volumn 58, Issue 2-3, 1998, Pages 162-169

How will bioinformatics influence metabolic engineering?

Author keywords

Bioinformatics; Enzyme kinetics; Genetic circuits; Genetic engineering; Mathematical analysis; Metabolic engineering; Modal analysis; Stoichiometry

Indexed keywords

BACTERIA; ENZYME KINETICS; MATHEMATICAL MODELS; METABOLISM; MODAL ANALYSIS; STOICHIOMETRY;

EID: 0032485842     PISSN: 00063592     EISSN: None     Source Type: Journal    
DOI: 10.1002/(SICI)1097-0290(19980420)58:2/3<162::AID-BIT8>3.0.CO;2-J     Document Type: Article
Times cited : (76)

References (46)
  • 1
    • 0025895183 scopus 로고
    • Toward a science of metabolic engineering
    • Bailey, J. E. 1991. Toward a science of metabolic engineering. Science 252: 1668-1675.
    • (1991) Science , vol.252 , pp. 1668-1675
    • Bailey, J.E.1
  • 2
    • 0030804853 scopus 로고    scopus 로고
    • Flux analysis of under-determined metabolic networks: The quest for the missing constraints
    • Bonarius, H. P. J., Schmid, G., Tramper, J. 1997. Flux analysis of under-determined metabolic networks: The quest for the missing constraints. Trends Biotechnol. 15: 308-314.
    • (1997) Trends Biotechnol. , vol.15 , pp. 308-314
    • Bonarius, H.P.J.1    Schmid, G.2    Tramper, J.3
  • 4
    • 0030902485 scopus 로고    scopus 로고
    • Molecular linguistics: Extracting information from gene and protein sequences
    • Botstein, D., Cherry, J. M. 1997. Molecular linguistics: Extracting information from gene and protein sequences. Proc. Natl. Acad. Sci. 94: 5506-5507.
    • (1997) Proc. Natl. Acad. Sci. , vol.94 , pp. 5506-5507
    • Botstein, D.1    Cherry, J.M.2
  • 5
    • 16044367245 scopus 로고    scopus 로고
    • Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii
    • Bult, C. J., White, O., Olsen, G. J. 1996. Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii. Science 273: 1058-1073.
    • (1996) Science , vol.273 , pp. 1058-1073
    • Bult, C.J.1    White, O.2    Olsen, G.J.3
  • 6
    • 0017852111 scopus 로고
    • Succinate dehydrogenase-dependent nutritional requirement for succinate in mutants of Escherichia coli K-12
    • Creaghan, I. T., & Guest, J. R. 1978. Succinate dehydrogenase-dependent nutritional requirement for succinate in mutants of Escherichia coli K-12. J. Gen. Microbiol. 107: 1-13.
    • (1978) J. Gen. Microbiol. , vol.107 , pp. 1-13
    • Creaghan, I.T.1    Guest, J.R.2
  • 7
    • 0031194875 scopus 로고    scopus 로고
    • Inverse flux analysis for reduction of acetate excretion in Escherichia coli
    • Delgado, J., Liao, J. C. 1997. Inverse flux analysis for reduction of acetate excretion in Escherichia coli. Biotechnology Progress. 13(4): 361-367.
    • (1997) Biotechnology Progress , vol.13 , Issue.4 , pp. 361-367
    • Delgado, J.1    Liao, J.C.2
  • 8
    • 0022493181 scopus 로고
    • Fat synthesis in adipose tissue. An examination of stoichiometric constraints
    • Fell, D.A., Small, J.R. 1986. Fat synthesis in adipose tissue. An examination of stoichiometric constraints. Biochem. J. 238(3): 781-786.
    • (1986) Biochem. J. , vol.238 , Issue.3 , pp. 781-786
    • Fell, D.A.1    Small, J.R.2
  • 9
    • 0029653518 scopus 로고
    • Whole-genome random sequencing and assembly of Haemophilus influenzas Rd
    • Fleischmann, R. D., Adams, M. D., White, O. 1995. Whole-genome random sequencing and assembly of Haemophilus influenzas Rd. Science 269: 496-512.
    • (1995) Science , vol.269 , pp. 496-512
    • Fleischmann, R.D.1    Adams, M.D.2    White, O.3
  • 10
    • 0028829125 scopus 로고
    • The minimal gene complement of Mycoplasma genitalium
    • Fraser, C. M., Gocayne, J. D., White, O. 1995. The minimal gene complement of Mycoplasma genitalium. Science 270: 397-403.
    • (1995) Science , vol.270 , pp. 397-403
    • Fraser, C.M.1    Gocayne, J.D.2    White, O.3
  • 12
    • 0029278153 scopus 로고
    • Metabolic flux distributions in Penicillium chrysogenum during fed-batch cultivations
    • Jorgensen, H., Nielsen, J., Villadsen, J. 1995. Metabolic flux distributions in Penicillium chrysogenum during fed-batch cultivations. Biotechnol. Bioeng. 46: 117-131.
    • (1995) Biotechnol. Bioeng. , vol.46 , pp. 117-131
    • Jorgensen, H.1    Nielsen, J.2    Villadsen, J.3
  • 13
    • 0024278202 scopus 로고
    • Escherichia coli growth dynamics: A three pool biochemically based description
    • Joshi, A., Palsson, B. O. 1987. Escherichia coli growth dynamics: A three pool biochemically based description. Biotechnol. Bioeng. 31: 102-116.
    • (1987) Biotechnol. Bioeng. , vol.31 , pp. 102-116
    • Joshi, A.1    Palsson, B.O.2
  • 14
    • 0024842144 scopus 로고
    • Metabolic dynamics in the human red cell. Pan I - A comprehensive kinetic model
    • Joshi, A., Palsson, B. O. 1989. Metabolic dynamics in the human red cell. Pan I - A comprehensive kinetic model. J. Theor. Biol. 141: 515-528.
    • (1989) J. Theor. Biol. , vol.141 , pp. 515-528
    • Joshi, A.1    Palsson, B.O.2
  • 15
    • 0030219035 scopus 로고    scopus 로고
    • Database links are a foundation for interoperability
    • Karp, P. D. 1996a. Database links are a foundation for interoperability. Trends Biotechnol. 14: 273-279.
    • (1996) Trends Biotechnol. , vol.14 , pp. 273-279
    • Karp, P.D.1
  • 16
    • 0029867572 scopus 로고    scopus 로고
    • EcoCyc: An encyclopedia of Escherichia coli genes and metabolism
    • Karp, P. D. 1996b. EcoCyc: An encyclopedia of Escherichia coli genes and metabolism. Nucl. Acids Res. 24: 32-39.
    • (1996) Nucl. Acids Res. , vol.24 , pp. 32-39
    • Karp, P.D.1
  • 17
    • 0024788520 scopus 로고
    • ColE1 plasmid replication: A simple kinetic description from a structured model
    • Keasling, J. D., Palsson, B. O. 1989a. ColE1 plasmid replication: A simple kinetic description from a structured model. J. Theor. Biol. 141: 447-461.
    • (1989) J. Theor. Biol. , vol.141 , pp. 447-461
    • Keasling, J.D.1    Palsson, B.O.2
  • 18
    • 0024976035 scopus 로고
    • On the kinetics of plasmid replication
    • Keasling, J. D., Palsson, B. O. 1989b. On the kinetics of plasmid replication. J. Theor. Biol. 136: 487-492.
    • (1989) J. Theor. Biol. , vol.136 , pp. 487-492
    • Keasling, J.D.1    Palsson, B.O.2
  • 19
    • 0030113436 scopus 로고    scopus 로고
    • Sequencing and analysis of bacterial genomes
    • Koonin, E. V., Mushegian, A. R., Rudd, K. E. 1996. Sequencing and analysis of bacterial genomes. Curr. Biol. 6: 404-416.
    • (1996) Curr. Biol. , vol.6 , pp. 404-416
    • Koonin, E.V.1    Mushegian, A.R.2    Rudd, K.E.3
  • 20
    • 0025405421 scopus 로고
    • Simple constrained optimization view of acetate overflow in E. coli
    • Majewski, R. A., Domach, M. M. 1990. Simple constrained optimization view of acetate overflow in E. coli. Biotechnol. Bioeng. 35: 732-738.
    • (1990) Biotechnol. Bioeng. , vol.35 , pp. 732-738
    • Majewski, R.A.1    Domach, M.M.2
  • 22
    • 0030219788 scopus 로고    scopus 로고
    • Computational comparisons of model genomes
    • Ouzounis, C., Casari, G. 1996. Computational comparisons of model genomes. Trends Biotechnol. 14: 280-285.
    • (1996) Trends Biotechnol. , vol.14 , pp. 280-285
    • Ouzounis, C.1    Casari, G.2
  • 23
    • 0023169857 scopus 로고
    • On the dynamics of the irreversible Michaelis-Menten reaction mechanism
    • Palsson, B. O. 1987. On the dynamics of the irreversible Michaelis-Menten reaction mechanism. Chem. Eng. Sci. 42: 447-458.
    • (1987) Chem. Eng. Sci. , vol.42 , pp. 447-458
    • Palsson, B.O.1
  • 24
    • 0021703872 scopus 로고
    • Mathematical modeling of dynamics and control in metabolic networks. Part II. Simple dimeric enzymes
    • Palsson, B. O., Jamier, R., Lightfoot, E. N. 1984. Mathematical modeling of dynamics and control in metabolic networks. Part II. Simple dimeric enzymes. J. Theor. Biol. 111: 303-321.
    • (1984) J. Theor. Biol. , vol.111 , pp. 303-321
    • Palsson, B.O.1    Jamier, R.2    Lightfoot, E.N.3
  • 25
    • 0023331571 scopus 로고
    • On the dynamic order of structured Escherichia coli growth models
    • Palsson, B. O., Joshi, A. 1987. On the dynamic order of structured Escherichia coli growth models. Biotechnol. Bioeng. 29: 789-792.
    • (1987) Biotechnol. Bioeng. , vol.29 , pp. 789-792
    • Palsson, B.O.1    Joshi, A.2
  • 26
    • 0023356336 scopus 로고
    • Reducing complexity in metabolic networks: Making metabolic meshes manageable
    • Palsson, B. O., Joshi, A., Ozturk, S. S. 1987. Reducing complexity in metabolic networks: making metabolic meshes manageable. Fed. Proc. 46: 2485-2489.
    • (1987) Fed. Proc. , vol.46 , pp. 2485-2489
    • Palsson, B.O.1    Joshi, A.2    Ozturk, S.S.3
  • 27
    • 0021734908 scopus 로고
    • Mathematical modeling of dynamics and control in metabolic networks. Part I. On Michaelis-Menten Kinetics
    • Palsson, B. O., Lightfoot, E. N. 1984. Mathematical modeling of dynamics and control in metabolic networks. Part I. On Michaelis-Menten Kinetics. J. Theor. Biol. 111: 273-302.
    • (1984) J. Theor. Biol. , vol.111 , pp. 273-302
    • Palsson, B.O.1    Lightfoot, E.N.2
  • 28
    • 0022414238 scopus 로고
    • Mathematical modeling of dynamics and control in metabolic networks. Part III. Linear reaction sequences
    • Palsson, B. O., Palsson, H., Lightfoot, E. N. 1985. Mathematical modeling of dynamics and control in metabolic networks. Part III. Linear reaction sequences. J. Theor. Biol. 113: 231-259.
    • (1985) J. Theor. Biol. , vol.113 , pp. 231-259
    • Palsson, B.O.1    Palsson, H.2    Lightfoot, E.N.3
  • 29
    • 0021918026 scopus 로고
    • Equations and calculations of product yields and preferred pathways for butanediol and mixed-acid fermentations
    • Papoutsakis, E., Meyer, C. 1985a. Equations and calculations of product yields and preferred pathways for butanediol and mixed-acid fermentations. Biotechnol. Bioeng. 27: 50-66.
    • (1985) Biotechnol. Bioeng. , vol.27 , pp. 50-66
    • Papoutsakis, E.1    Meyer, C.2
  • 30
    • 0021918916 scopus 로고
    • Fermentation equations for propionic-acid bacteria and production of assorted oxychemicals from various sugars
    • Papoutsakis, E., Meyer, C. 1985b. Fermentation equations for propionic-acid bacteria and production of assorted oxychemicals from various sugars. Biotechnol. Bioeng. 27: 67-80.
    • (1985) Biotechnol. Bioeng. , vol.27 , pp. 67-80
    • Papoutsakis, E.1    Meyer, C.2
  • 31
    • 0021383728 scopus 로고
    • Equations and calculations for fermentations of butyric acid bacteria
    • Papoutsakis, E. T. 1984. Equations and calculations for fermentations of butyric acid bacteria. Biotechnol. Bioeng. 26: 174-187.
    • (1984) Biotechnol. Bioeng. , vol.26 , pp. 174-187
    • Papoutsakis, E.T.1
  • 32
    • 15844419154 scopus 로고    scopus 로고
    • Metabolic flux distribution in Corynebacterium melassecola ATCC 17965 for various carbon sources
    • Pons, A., Dussap, C., Pequignot, C., Gros, J. 1996. Metabolic flux distribution in Corynebacterium melassecola ATCC 17965 for various carbon sources. Biotechnol. Bioeng. 51: 177-189.
    • (1996) Biotechnol. Bioeng. , vol.51 , pp. 177-189
    • Pons, A.1    Dussap, C.2    Pequignot, C.3    Gros, J.4
  • 34
    • 0026516223 scopus 로고
    • Network analysis of intermediary metabolism using linear optimization: I. Development of mathematical formalism
    • Savinell, J. M., Palsson, B. O. 1992. Network analysis of intermediary metabolism using linear optimization: I. Development of mathematical formalism. J. Theor. Biol. 154: 421-454.
    • (1992) J. Theor. Biol. , vol.154 , pp. 421-454
    • Savinell, J.M.1    Palsson, B.O.2
  • 36
    • 0027657693 scopus 로고
    • Metabolic engineering-methodologies and future prospects
    • Stephanopoulos, G., Sinskey, A. J. 1993. Metabolic engineering-methodologies and future prospects. Tibtech 11 (September), 7(9): 392-396.
    • (1993) Tibtech 11 (September) , vol.7 , Issue.9 , pp. 392-396
    • Stephanopoulos, G.1    Sinskey, A.J.2
  • 37
    • 0025866296 scopus 로고
    • Network rigidity and metabolic engineering in metabolite overproduction
    • Stephanopoulos, G., Vallino, J. 1991. Network rigidity and metabolic engineering in metabolite overproduction. Science 252: 1675-1681.
    • (1991) Science , vol.252 , pp. 1675-1681
    • Stephanopoulos, G.1    Vallino, J.2
  • 39
    • 0027572102 scopus 로고
    • Metabolic flux distributions in Corynebacterium glutamicum during growth and lysine overproduction
    • Vallino, J., Stephanopoulos, G. 1993. Metabolic flux distributions in Corynebacterium glutamicum during growth and lysine overproduction. Biotechnol. Bioeng. 41: 633-646.
    • (1993) Biotechnol. Bioeng. , vol.41 , pp. 633-646
    • Vallino, J.1    Stephanopoulos, G.2
  • 40
    • 0027909387 scopus 로고
    • Biochemical production capabilities of Escherichia coli
    • Varma, A., Boesch, B. W., Palsson, B. O. 1993. Biochemical production capabilities of Escherichia coli. Biotechnol. Bioeng. 42: 59-73.
    • (1993) Biotechnol. Bioeng. , vol.42 , pp. 59-73
    • Varma, A.1    Boesch, B.W.2    Palsson, B.O.3
  • 41
    • 0027723421 scopus 로고
    • Metabolic capabilities of Escherichia coli. II. Optimal growth patteras
    • Varma, A., Palsson, B. O. 1993. Metabolic capabilities of Escherichia coli. II. Optimal growth patteras. J. Theor. Biol. 165: 503-522.
    • (1993) J. Theor. Biol. , vol.165 , pp. 503-522
    • Varma, A.1    Palsson, B.O.2
  • 42
    • 0028108519 scopus 로고
    • Metabolic flux balancing: Basic concepts, scientific and practical use
    • Varma, A., Palsson, B. O. 1994a. Metabolic flux balancing: Basic concepts, scientific and practical use. Bio/Technol. 12: 994-998.
    • (1994) Bio/Technol. , vol.12 , pp. 994-998
    • Varma, A.1    Palsson, B.O.2
  • 43
    • 0028146781 scopus 로고
    • Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild-type Escherichia coli W3110
    • Varma, A., Palsson, B. O. 1994b. Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild-type Escherichia coli W3110. Appl. Environ. Microbiol. 60: 3724-3731.
    • (1994) Appl. Environ. Microbiol. , vol.60 , pp. 3724-3731
    • Varma, A.1    Palsson, B.O.2
  • 45
    • 0028036096 scopus 로고
    • Modeling of isotope distributions and intracellular fluxes in metabolis networks using atom mapping matrices
    • Zupke, C., Stephanopoulos, G. 1994. Modeling of isotope distributions and intracellular fluxes in metabolis networks using atom mapping matrices. Biotechnol. Prog. 10: 489-498.
    • (1994) Biotechnol. Prog. , vol.10 , pp. 489-498
    • Zupke, C.1    Stephanopoulos, G.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.