Surface properties of adipocyte lipid-binding protein: Response to lipid binding, and comparison with homologous proteins

Proteins: Structure, Function and Genetics

Volumn 33, Issue 4, 1998, Pages 577-589

  LiCata, Vince J ^a,b   Bernlohr, David A ^a  

^a UNIVERSITY OF MINNESOTA   (United States)

^b LOUISIANA STATE UNIVERSITY   (United States)

Author keywords

Accessible surface area; Electrostatics; Fatty acid binding proteins

Indexed keywords

LIPID BINDING PROTEIN;

ADIPOCYTE; ARTICLE; CONFORMATIONAL TRANSITION; CRYSTAL STRUCTURE; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN BINDING; PROTEIN CONFORMATION; PROTEIN LIPID INTERACTION; PROTEIN STRUCTURE; STRUCTURE ANALYSIS;

ADIPOCYTES; ALGORITHMS; ARACHIDONIC ACIDS; CARRIER PROTEINS; COMPUTER SIMULATION; ELECTROSTATICS; FATTY ACID-BINDING PROTEINS; MODELS, MOLECULAR; MYELIN P2 PROTEIN; NEOPLASM PROTEINS; OLEIC ACIDS; PALMITATES; PROTEIN CONFORMATION; PROTEIN STRUCTURE, SECONDARY; STEARATES; SURFACE PROPERTIES;

VERTEBRATA;

EID: 0032374074     PISSN: 08873585     EISSN: None     Source Type: Journal    
DOI: 10.1002/(SICI)1097-0134(19981201)33:4<577::AID-PROT10>3.0.CO;2-2     Document Type: Article

References (37)

1. Banaszak, L., Winter, N., Xu, Z., Bernlohr, D.A., Cowan, S., and Jones, T.A. Lipid-binding proteins: A family of fatty acid and retinoid transport proteins. Adv. Protein Chem. 45:89-151, 1994.
2. Bernlohr, D.A., Simpson, M.A., Hertzel, A.V., Banaszak, L.J. Intracellular lipid-binding proteins and their genes. Annu. Rev. Nutr. 17:277-303, 1997.
3. Xu, Z., Bernlohr, D.A., Banaszak, L.J. The adipocyte lipid-binding protein at 1.6 Å resolution. Crystal structures of the apoprotein and with bound saturated and unsaturated fatty acids. J. Biol. Chem. 268:7874-7884, 1993.
4. Laskowski, R.A., Luscombe, N.M., Swindells, M.B., Thornton, J.M. Protein clefts in molecular recognition and function. Protein Sci. 5:2438-2452, 1996.
5. Xu, Z., Bernlohr, D.A., Banaszak, L.J. Crystal structure of recombinant murine adipocyte lipid-binding protein. Biochemistry 31:3484-3492, 1992.
6. LaLonde, J.M., Bernlohr, D.A., Banaszak, L.J. X-ray crystallographic structures of adipocyte lipid-binding protein complexed with palmitate and hexadecanesulfonic acid. Properties of cavity binding sites. Biochemistry 33:4885-4895, 1994.
7. LaLonde, J.M., Levenson, M.A., Roe, J.J., Bernlohr, D.A., Banaszak, L.J. Adipocyte lipid-binding protein complexed with arachidonic acid. Titration calorimetry and X-ray crystallographic studies. J. Biol. Chem. 269:25339-25347, 1994.
8. Kim, H.K., Storch, J. Mechanism of free fatty acid transfer from rat heart fatty acid binding protein to phospholipid membranes. Evidence for a collisional process. J. Biol. Chem. 267:20051-20056, 1992.
9. Wootan, M.G., Bernlohr, D.A., Storch, J. Mechanism of fluorescent fatty acid transfer from adipocyte fatty acid binding protein to membranes. Biochemistry 32:8622-8627, 1993.
10. Hsu, K.-T., Storch, J. Fatty acid transfer from liver and intestinal fatty acid binding proteins to membranes occurs by different mechanisms. J. Biol. Chem. 271:13317-13323, 1996.
11. Wootan, M.G., Storch, J. Regulation of fluorescent fatty acid transfer from adipocyte and heart fatty acid binding proteins by acceptor membrane lipid composition and structure. J. Biol. Chem. 269:10517-10523, 1994.
12. Herr, F.M., Matarese, V., Bernlohr, D.A., Storch, J. Surface lysine residues modulate the collisional transfer of fatty acid from adipocyte fatty acid binding protein to membranes. Biochemistry 34:11840-11845, 1995.
13. Herr, F.M., Aronson, J., Storch, J. Role of portal region lysine residues in electrostatic interactions between heart fatty acid binding protein and phospholipid membranes. Biochemistry 35:1296-1303, 1996.
14. Gericke, A., Smith, E.R., Moore, D.J., Mendelsohn, R., Storch, J. Adipocyte fatty acid binding protein: Interaction with phospholipid membranes and thermal stability studied by FTIR spectroscopy. Biochemistry 36:8311-8317, 1997.
15. Sacchettini, J.C., Gordon, J.L, Banaszak, L.J. The structure of rat intestinal fatty acid binding protein. Refinement and analysis of the Escherichia coli-derived protein with bound palmitate. J. Mol. Biol. 208:327-339, 1989.
16. Connolly, M.L. Solvent accessible surfaces of proteins and nucleic acids. Science 221:709-713, 1983.
17. Connolly, M.L. The molecular surface package. J. Mol. Graph. 11:139-141, 1993.
18. Nicholls, A., Sharp, K.A., Honig, B. Protein folding and association: Insights from the interfacial and thermodynamic properties of hydrocarbons. Proteins 11:281-296, 1991.
19. Klapper, I., Hagstrom, R., Fine, R., Sharp, K., Honig, B. Focusing of electric fields in the active site of Cu-Zn superoxide dismutase. Proteins 1:47-59, 1986.
20. Garcia-Moreno, B., Dwyer, J.J., Gittis, A.G., Lattman, E.E., Spencer, D.S., Stites, W.E. Experimental measurement of the effective dielectric in the hydrophobic core of a protein. Biophys. Chem. 64:211-224, 1997.
21. Colombo, M.F, Rau, D.C., Parsegïan, V.A. Protein solvation in allosteric regulation: A water effect on hemoglobin. Science 256:655-659, 1992.
22. Miller, S., Janin, J., Lesk, A.M., Chothia, C. Interior and surface of monomeric proteins. J. Mol. Biol. 196:641-656, 1987.
23. Dry, J., Kane, C.D., Simpson, M.A., Banaszak, L.J., Bernlohr, D.A. Biochemical and crystallographic analyses of a portal mutant of the adipocyte lipid binding protein. J. Biol. Chem. 272:9793-9801, 1997.
24. Weise, M.J., Brostoff, S.W. Research methods in studies with P2 basic protein. Res. Meth. Neurochem. 6:263-302, 1985.
25. Cowan, S.W., Newcomer, M.E., Jones, T.A. Crystallographic studies on a family of cellular lipophilic transport proteins. Refinement of P2 myelin protein and the structure determination of cellular retinol-binding protein in complex with all-trans-retinol. J. Mol. Biol. 230:1225-1246, 1993.
26. LiCata, V.J., Allewell, N.M. Measuring hydration changes of proteins in solution: Applications of osmotic stress and structure-based calculations. Meth. Enzymol. 295:42-61, 1998.
27. Liang, J., Edelsbrunner, H., Woodward, C.K. Anatomy of protein pockets and cavities: Measurement of binding site geometry and implications for ligand design. Protein Sci. 7:1884-1897, 1998.
28. Herr, F.M., Ong, D.E. Differential interaction of lecithin-retinol acyltransferase with cellular retinol binding proteins. Biochemistry 31:6748-6755, 1992.
29. Feher, V.A., Baldwin, E.P., Dahlquist, F.W. Access of ligands to cavities within the core of a protein is rapid. Nat. Struct. Biol. 3:516-521, 1996.
30. 15N assignments and chemical shift-derived secondary structure of intestinal fatty acid binding protein. J. Biomol. NMR 6:198-210, 1995.
31. Hodsdon, M.E., Ponder, J.W., Cistola, D.P. The NMR solution structure of intestinal fatty acid binding protein complexed with palmitate: Application of a novel distance geometry alogorithm. J. Mol. Biol. 264:585-602, 1996.
32. 1H exchange. Biochemistry 36:2278-2290, 1997.
33. Hodsdon, M.E., Cistola, D.P. Discrete backbone disorder in the nuclear magnetic resonance structure of apo intestinal fatty acid binding protein: Implications for the mechanism of ligand entry. Biochemistry 36:1450-1460, 1997.
34. Lassen, D., Lucke, C., Kveder, M., Mesgarzadeh, A., Schmidt, J.M., Specht, B., Lezius, A., Spener, F., Ruterjans, H. Three-dimensional structure of bovine heart fatty-acid-binding protein with bound palmitic acid, determined by multidimensional NMR spectroscopy. Eur. J. Biochem. 230:266-280, 1995.
35. Lücke, C., Zhang, F., Ruterjans, H., Hamilton, J.A., Sacchettini, J.C. Flexibility is a likely determinant of binding specificity in the case of ileal lipid binding protein. Structure 4:785-800, 1996.
36. Jamison, R.S., Newcomer, M.E., Ong, D.E. Cellular retinoid binding proteins: Limited proteolysis reveals a conformational change upon ligand binding. Biochemistry 33: 2873-2879, 1994.
37. Thompson, J., Winter, N., Terwey, D., Bratt, J., Banaszak, L. The crystal structure of the liver fatty acid-binding protein. A complex with two bound oleates. J. Biol. Chem. 272:7140-7150, 1997.