Flexibility is a likely determinant of binding specificity in the case of ileal lipid binding protein

Structure

Volumn 4, Issue 7, 1996, Pages 785-800

  Lücke, Christian ^a,b   Zhang, Fengli ^c   Rüterjans, Heinz ^b   Hamilton, James A ^c   Sacchettini, James C ^a  

^a ALBERT EINSTEIN COLLEGE OF MEDICINE   (United States)

^b GOETHE UNIVERSITY   (Germany)

^c BOSTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

bile acid binding; hydrogen exchange rate; lipid binding protein; NMR spectroscopy; protein ligand interaction

Indexed keywords

ANIMALIA; BIVALVIA; BOS TAURUS; BOVINAE; SUIDAE; SUS SCROFA;

EID: 0030586026     PISSN: 09692126     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0969-2126(96)00086-X     Document Type: Article

References (61)

1. Walz, D.A., Wider, M.D., Snow, J.W., Dass, C. & Desiderio, D.M. (1988). The complete amino acid sequence of porcine gastrotropin, an ileal protein which stimulates gastric acid and pepsinogen secretion. J. Biol. Chem. 263, 14189-14195.
2. Defize, J., Wider, M.D., Walz, D. & Hunt, R.H. (1988). Isolation and partial characterization of gastrotropin from canine ileum: Further studies of the parietal and chief cell response. Endocrinology 123, 2578-2584.
3. Tsunoda, Y. & Wider, M.D. (1987). Porcine ileal polypeptide causes an increase in cytoplasmic calcium in both parietal and chief cells resulting in acid and pepsinogen secretion. Biochim. Biophys. Acta 905, 118-124.
4. Gantz, I., et al., & Yamada, T. (1989). Gastrotropin: Not an Enterooxyntin but a member of a family of cytoplasmic hydrophobic ligand binding proteins. J. Biol. Chem. 264, 20248-20254.
5. Ockner, R.K., Manning, J.A., Poppenhausen, R.B. & Ho, W.K.L. (1972). A binding protein for fatty acids in cytosol of intestinal mucosa, liver, myocardium and other tissues. Science 177, 56-58.
6. Ockner, R.X. & Manning, J.A. (1974). Intestinal fatty acid binding protein (FABP). Identification, isolation from rat intestine and evidence for its role in cellular fatty acid transport. J. Clin. Invest. 54, 326-338.
7. Matsushita, Y., Umeyama, H. & Moriguchi, I. (1977). Purification and properties of Z protein from rabbit and rat liver. Chem. Pharm. Bull. (Tokyo) 25, 647-652.
8. Ockner, R.K., Manning, J.A. & Kane, J.P. (1982). Fatty acid binding proteins. Isolation from rat liver, characterization and immunochemical quantification. J. Biol. Chem. 257, 7872-7878.
9. Haunerland, N., Jagschies, G., Schulenberg, H. & Spener, F. (1984). Fatty-acid-binding proteins. Occurrence of two fatty-acid-binding proteins in bovine liver cytosol and their binding of fatty acids, cholesterol, and lipophilic ligands. Hoppe-Seyler's Z. Physiol. Chem. 365, 365-376.
10. Kawashima, Y., Tachibana, Y., Nakagawa, S. & Kozuka, H. (1984). Species difference of liver cytosolic fatty acid-binding protein in rat mouse and guinea pig. Lipids 19, 481-487.
11. Glatz, J.F.C., Janssen, A.M., Baerwaldt, C.C.F. & Veerkamp, J.H. (1985). Purification and characterization of fatty acid-binding proteins from rat heart and liver. Biochim. Biophys. Acta 837, 57-66.
12. Jagschies, G., Reers, M., Unterberg, C. & Spener, F. (1985). Bovine fatty acid binding proteins. Isolation and characterisation of two cardiac fatty acid binding proteins that are distinct from corresponding hepatic proteins. Eur. J. Biochem. 152, 537-545.
13. Unterberg, C., Heidi, G.,von Bassewitz, D.-B. & Spener, F. (1986). Isolation and characterization of the fatty acid binding protein from human heart. J. Lipid Res. 27, 1287-1293.
14. Matarese, V. & Bernlohr, D.A. (1988). Purification of murine adipocyte lipid-binding protein. J. Biol. Chem. 263, 14544-14551.
15. Peeters, R.A., In't Groen, M.A. & Veerkamp, J.H. (1989). The fatty acid-binding protein from human skeletal muscle. Arch. Biochem. Biophys. 274, 556-563.
16. Scapin, G., Spadon, P., Pengo, L., Mammi, M., Zanotti, G. & Monaco, H.L. (1988). Chicken liver basic fatty acid-binding protein (pl=9.0). Purification, crystallization and preliminary X-ray data. FEBS Lett. 240, 196-200.
17. Collins, D.M. & Hargis, P.S. (1989). Distribution of fatty acid binding proteins in tissues and plasma of Gallus domesticus. Comp. Biochem. Physiol. B 92, 283-289.
18. Bass, N.M., Manning, J.A. & Luer, C.A. (1991). Isolation and characterization of fatty acid binding protein in the liver of the nurse shark, Ginglymostoma cirratum. Comp. Biochem. Physiol. A 98, 355-362.
19. Moser, D., Tendler, M., Griffiths, T. & Klinkert, M.-Q. (1991). A 14-kDa Schistosoma mansoni polypeptide is homologous to a gene family of fatty acid binding proteins. J. Biol. Chem. 266, 8447-8454.
20. Haunerland, N. & Chisholm, J.M. (1990). Fatty acid binding protein in flight muscle of the locust, Schistocerca-Gregaria. Biochim. Biophys. Acta 1047, 233-238.
21. Smith, A.F., Tsuchida, K., Hanneman, E., Suzuki, T.C. & Wells, M.A. (1992). Isolation, characterization, and cDNA sequence of two fatty acid-binding proteins from the midgut of Manducta sexta larvae. J. Biol. Chem. 267, 380-384.
22. van der Horst, D.J., van Doom, J.M., Passier, P.C.C.M., Vork, M.M. & Glatz, J.F.C. (1993). Role of fatty acid-binding protein in lipid metabolism of insect flight muscle. Mol. Cell. Biochem. 123, 145-152.
23. Veerkamp, J.H., Peeters, R.A. & Maatman, R.G.H.J. (1991). Structural and functional features of different types of cytoplasmic fatty acid-binding proteins. Biochim. Biophys. Acta 1081, 1-24.
24. Baier, L.J., et al., & Prochazka, M. (1995). An amino acid substitution in the human intestinal fatty acid binding protein is associated with increased fatty acid binding, increased fat oxidation, and insulin resistance. J. Clin. Invest. 95, 1281-1287.
25. Sacchettini, J.C., Gordon, J.I. & Banaszak, L.J. (1988). The structure of crystalline Escherichia coli-derived rat intestinal fatty acid-binding protein at 2.5-A resolution. J. Biol. Chem. 263, 5815-5819.
26. Sacchettini, J.C., Gordon, J.I. & Banaszak, L.J. (1989). Refined apoprotein structure of rat intestinal fatty acid binding protein produced in Escherichia coli. Proc. Natl. Acad. Sci. USA 86, 7736-7740.
27. Scapin, G., Gordon, J.I. & Sacchettini, J.C. (1992). Refinement of the structure of recombinant rat intestinal fatty acid-binding apoprotein at 1.2-Å resolution. J. Biol. Chem. 267, 4253-4269.
28. Scapin, G., Spadon, P., Mammi, M., Zanotti, G. & Monaco, H.L. (1990). Crystal structure of chicken liver basic fatty acid-binding protein at 2.7 A resolution. Mol. Cell. Biochem. 98, 95-99.
29. Müller-Fahrnow, A., Egner, U., Jones, T.A., Rüdel, H., Spener, F. & Saenger, W. (1991). Three-dimensional structure of fatty-acid-binding protein from bovine heart. Eur. J. Biochem. 199, 271-276.
30. Zanotti, G., Scapin, G., Spadon, P., Veerkamp, J.H. & Sacchettini, J.C. (1992). Three-dimensional structure of recombinant human muscle fatty acid-binding protein. J. Biol. Chem. 267, 18541-18550.
31. Xu, Z., Bernlohr, D.A. & Banaszak, L.J. (1992). Crystal structure of recombinant murine adipocyte lipid-binding protein. Biochemistry 31, 3484-3492.
32. Jones, T.A., Bergfors, T., Sedzik, J. & Unge, T. (1988). The three-dimensional structure of P2 myelin protein. EMBO J. 7, 1597-1604.
33. Cowan, S.W., Newcomer, M.E. & Jones, T.A. (1993). Crystallographic studies on a family of cellular lipophilic transport proteins: The refinement of P2 myelin protein and the structure determination and refinement of cellular retinol-binding protein in complex with all-trans retinol. J. Mol. Biol. 230, 1225-1246.
34. Benning, M.M., Smith, A.F., Wells, M.A. & Holden, H.M. (1992). Crystallization, structure determination and least-squares refinement to 1.75 A resolution of the fatty acid binding protein isolated from Manducta sexta L. J. Mol. Biol. 228, 208-219.
35. Lassen, D., Lücke, C., Kromminga, A., Lezius, A., Spener, F. & Rüterjans, H. (1993). Solution structure of bovine heart fatty acid-binding protein (H-FABPc). Mol. Cell. Biochem. 123, 15-22.
36. Lassen, D., et al., & Rüterjans, H. (1995). Three-dimensional structure of bovine heart fatty-acid-binding protein with bound palmitic acid, determined by multidimensional NMR spectroscopy. Eur. J. Biochem. 230, 266-280.
37. Bass, N.M. (1993). Cellular binding proteins for fatty acids and retinoids. Similar or specialized functions? Mol. Cell. Biochem. 123, 191-202.
38. Winter, N.S., Bratt, J.M. & Banaszak, L.J. (1993). Crystal structures of holo and apo-cellular retinol-binding protein II. J. Biol. Chem. 230, 1247-1259.
39. Sacchettini, J.C., Hauft, S.M., Van Camp, S.L., Cistola, D.P. & Gordon, J.I. (1990). Developmental and structural studies of an intracellular lipid binding protein expressed in the ileal epithelium. J. Biol. Chem. 265, 19199-19207.
40. Takikawa, H. & Kaplowitz, N. (1986). Binding of bile acids, oleic acid, and organic anions by rat and human hepatic Z protein. Arch. Biochem. Biophys. 251, 385-392.
41. Dietrich, A., et al., & Kurz, G. (1995). Functional significance of interaction of H-FABP with sulfated and nonsulfated taurine-conjugated bile salts in rat liver. J. Lipid Res. 36, 1745-1755.
42. Nair, P.P. & Kritchevsky, D. (1971). The Bile Acids. Plenum Press, New York.
43. Miller, K.R. & Cistola, D.P. (1993). Titration calorimetry as a binding assay for lipid-binding proteins. Mol. Cell. Biochem. 123, 29-37.
44. Wüthrich, K. (1986). NMR of Proteins and Nucleic Acids. Wiley, New York.
45. 1H-NMR assignment and determination of the secondary structure of bovine heart fatty-acid-binding protein. Eur. J. Biochem. 210, 901-910.
46. Güntert, P., Braun, W. & Wüthrich, K. (1991). Efficient computation of three-dimensional protein structures in solution from NMR data using the program DIANA and the supporting programs CALIBA, HABAS and GLOMSA. J. Mol. Biol. 217, 517-530.
47. Güntert, P. & Wüthrich, K. (1991). Improved efficiency of protein structure calculations from NMR data using the program DIANA with redundant dihedral angle constraints. J. Biomol. NMR 1, 447-456.
48. Sacchettini, J.C., Scapin, G., Gopaul, D. & Gordon, J.I. (1992). Refinement of the structure of Escherichia coli-derived rat intestinal fatty acid binding protein with bound oleate to 1.75-Å resolution. J. Biol. Chem. 267, 23534-23545.
49. Sacchettini, J.C., Gordon, J.I. & Banaszak, L.J. (1989). Crystal structure of rat intestinal fatty-acid-binding protein. Refinement and analysis of the Escherichia coli-derived protein with bound palmitate. J. Mol. Biol. 208, 327-339.
50. Gordon, J.I., Alpers, D.H., Ockner, R.K. & Strauss, A.W. (1983). The nucleotide sequence of rat liver fatty acid binding protein mRNA. J. Biol. Chem. 258, 3356-3363.
51. Wishart, D.S., Sykes, B.D. & Richards, F.M. (1991). Relationship between nuclear magnetic resonance chemical shift and protein secondary structure. J. Mol. Biol. 222, 311-333.
52. Haunerland, N.H., Jacobson, B.L., Wesenberg, G., Rayment, I. & Holden, H.M. (1994). Three-dimensional structure of the muscle fatty-acid-binding protein isolated from the dessert locust Schistocerca gregaria. Biochemistry 33, 12378-12385.
53. Muga, A., Cistola, D.P. & Mantsch, H.H. (1993). A comparative study of the conformational properties of Escherichia coli-derived rat intestinal and liver fatty acid binding proteins. Biochim. Biophys. Acta 1162, 291-296.
54. Pardi, A., Wagner, G. & Wüthrich, K. (1983). Protein conformation and proton nuclear-magnetic-resonance chemical shifts. Eur. J. Biochem. 137, 445-454.
55. 15N assignments and chemical shift-derived secondary structure of intestinal fatty acid-binding protein. J. Biomol. NMR 6, 198-210.
56. Sambrook, J., Fritsch, E.F. & Maniatis, T. (1989). Molecular Cloning - A laboratory manual (2nd edition). (Nolan, C., ed.), vol 1, pp. 1.38-1.39, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
57. Laemmli, U.K. (1970). Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227, 680-685.
58. Glatz, J.F.C. & Veerkamp, J.H. (1983). A radiochemical procedure for the assay of fatty acid binding to proteins. Anal. Biochem. 132, 89-95.
59. Clark, M., Cramer III, R.D. & Van Opdenbosch, N. (1989). Validation of the General Purpose Tripos 5.2 Force Field. J. Comp. Chem. 10, 982-1012.
60. Kraulis, P.J. (1991). MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures. J. Appl. Cryst. 24, 946-950.
61. Nicholls, A., Sharp, K.A. & Honig, B. (1991). Protein folding and association: Insights from the interfacial and thermodynamic properties of hydrocarbons. Proteins 11, 281-296.