-
1
-
-
84986512474
-
CHARMm: A program for macromolecular energy, minimization and dynamics calculations
-
Brooks, B.R., Bruccoleri, R.E., Olafson, B.D., States, D.J., Swaminathan, S., Karplus, M. CHARMm: A program for macromolecular energy, minimization and dynamics calculations. J. Comput. Chem. 4:187-217, 1983.
-
(1983)
J. Comput. Chem.
, vol.4
, pp. 187-217
-
-
Brooks, B.R.1
Bruccoleri, R.E.2
Olafson, B.D.3
States, D.J.4
Swaminathan, S.5
Karplus, M.6
-
2
-
-
0001016942
-
Structure-based molecular design
-
Kuntz, I.D., Meng, E.C., Shoichet, B.K. Structure-based molecular design. Acc. Chem. Res. 27:117-123, 1994.
-
(1994)
Acc. Chem. Res.
, vol.27
, pp. 117-123
-
-
Kuntz, I.D.1
Meng, E.C.2
Shoichet, B.K.3
-
3
-
-
0029623184
-
Computational methods to predict binding free energy in ligand-receptor complexes
-
Ajay, Murcko, M.A. Computational methods to predict binding free energy in ligand-receptor complexes. J. Med. Chem. 38:4953-4967, 1995.
-
(1995)
J. Med. Chem.
, vol.38
, pp. 4953-4967
-
-
Ajay1
Murcko, M.A.2
-
4
-
-
0029100207
-
Flexible docking and design
-
Rosenfeld, R., Vajda, S., DeLisi, C. Flexible docking and design. Annu. Rev. Biophys. Biomol. Struct. 24:677-700, 1995.
-
(1995)
Annu. Rev. Biophys. Biomol. Struct.
, vol.24
, pp. 677-700
-
-
Rosenfeld, R.1
Vajda, S.2
DeLisi, C.3
-
5
-
-
0030203970
-
Evolutionary algorithms in computer-aided molecular design
-
Clark, D.E., Westhead, D.R. Evolutionary algorithms in computer-aided molecular design. J. Comput. Aided Mol. Des. 10:337-358, 1996.
-
(1996)
J. Comput. Aided Mol. Des.
, vol.10
, pp. 337-358
-
-
Clark, D.E.1
Westhead, D.R.2
-
6
-
-
0030474049
-
What can we learn from molecular recognition in protein-ligand complexes for the design of new drugs?
-
Böhm, H.-J., Klebe, G. What can we learn from molecular recognition in protein-ligand complexes for the design of new drugs? Angew. Chem. Int. Ed. Engl. 35:2588-2614, 1996.
-
(1996)
Angew. Chem. Int. Ed. Engl.
, vol.35
, pp. 2588-2614
-
-
Böhm, H.-J.1
Klebe, G.2
-
7
-
-
0030409818
-
Computational tools for structure-based ligand design
-
Böhm, H.-J. Computational tools for structure-based ligand design. Prog. Biophys. Mol. Biol. 66:197-210, 1996.
-
(1996)
Prog. Biophys. Mol. Biol.
, vol.66
, pp. 197-210
-
-
Böhm, H.-J.1
-
8
-
-
0030931109
-
Recent advances in computer-aided drug design methods
-
Parrill, A. Recent advances in computer-aided drug design methods. Expert Opin. Ther. Pat. 7:937-945, 1997.
-
(1997)
Expert Opin. Ther. Pat.
, vol.7
, pp. 937-945
-
-
Parrill, A.1
-
9
-
-
0030960230
-
Structure-based drug design: Computational advances
-
Marrone, T.J., Briggs, J.M., McCammon, J.A. Structure-based drug design: Computational advances. Annu. Rev. Pharm. Tox. 37:71-90, 1997.
-
(1997)
Annu. Rev. Pharm. Tox.
, vol.37
, pp. 71-90
-
-
Marrone, T.J.1
Briggs, J.M.2
McCammon, J.A.3
-
10
-
-
0030055657
-
Exploring the energy landscapes of molecular recognition by a genetic algorithm: Analysis of the requirements for robust docking of HIV-1 protease and FKBP-12 complexes
-
Verkhivker, G.M., Rejto, P.A., Gehlhaar, D.K., Freer, S.T. Exploring the energy landscapes of molecular recognition by a genetic algorithm: Analysis of the requirements for robust docking of HIV-1 protease and FKBP-12 complexes. Proteins 25:342-353, 1996.
-
(1996)
Proteins
, vol.25
, pp. 342-353
-
-
Verkhivker, G.M.1
Rejto, P.A.2
Gehlhaar, D.K.3
Freer, S.T.4
-
11
-
-
0031079364
-
"Mining minima": Direct computation of conformational free energy
-
Head, M.S., Given, J.A., Gilson, M.K. "Mining minima": Direct computation of conformational free energy. J. Phys. Chem. 101:1609-1618, 1997.
-
(1997)
J. Phys. Chem.
, vol.101
, pp. 1609-1618
-
-
Head, M.S.1
Given, J.A.2
Gilson, M.K.3
-
12
-
-
0031080551
-
A new class of models for computing receptor-ligand binding affinities
-
Gilson, M.K., Given, J.A., Head, M.S. A new class of models for computing receptor-ligand binding affinities. Chem. & Biol. 4:87-92, 1997.
-
(1997)
Chem. & Biol.
, vol.4
, pp. 87-92
-
-
Gilson, M.K.1
Given, J.A.2
Head, M.S.3
-
13
-
-
84973998038
-
Point spectrum on a quasi-homogeneous tree
-
Aomoto, K. Point spectrum on a quasi-homogeneous tree. Pac. J. Math. 147:231-242, 1992.
-
(1992)
Pac. J. Math.
, vol.147
, pp. 231-242
-
-
Aomoto, K.1
-
14
-
-
0003661154
-
-
New York: Springer-Verlag
-
Richert, R., Blumen, A., (eds.) "Disorder Effects in Relaxation Processes: Glasses, Proteins, Polymers." New York: Springer-Verlag, 1994.
-
(1994)
Disorder Effects in Relaxation Processes: Glasses, Proteins, Polymers
-
-
Richert, R.1
Blumen, A.2
-
15
-
-
12044251059
-
Dynamical properties of fractal networks - Scaling, numerical simulations, and physical realizations
-
Nakayama, T., Yakubo, K., Orbach, R.L. Dynamical properties of fractal networks - Scaling, numerical simulations, and physical realizations. Rev. Mod. Phys. 66:381-443, 1994.
-
(1994)
Rev. Mod. Phys.
, vol.66
, pp. 381-443
-
-
Nakayama, T.1
Yakubo, K.2
Orbach, R.L.3
-
16
-
-
0024722571
-
Reaction-path study of conformational transitions and helix formation in a tetrapeptide
-
Czerminski, R., Elber, R. Reaction-path study of conformational transitions and helix formation in a tetrapeptide. Proc. Natl. Acad. Sci. USA 86:6963-6967, 1989.
-
(1989)
Proc. Natl. Acad. Sci. USA
, vol.86
, pp. 6963-6967
-
-
Czerminski, R.1
Elber, R.2
-
17
-
-
0000191981
-
Reaction path study of conformational transitions in flexible systems: Applications to peptides
-
Czerminski, R., Elber, R. Reaction path study of conformational transitions in flexible systems: Applications to peptides. J. Chem. Phys. 92:5580-5601, 1990.
-
(1990)
J. Chem. Phys.
, vol.92
, pp. 5580-5601
-
-
Czerminski, R.1
Elber, R.2
-
18
-
-
0000370391
-
The topology of multidimensional potential energy surfaces: Theory and application to peptide structure and kinetics
-
Becker, O.M., Karplus, M. The topology of multidimensional potential energy surfaces: Theory and application to peptide structure and kinetics. J. Chem. Phys. 106:1495-1517, 1997.
-
(1997)
J. Chem. Phys.
, vol.106
, pp. 1495-1517
-
-
Becker, O.M.1
Karplus, M.2
-
20
-
-
0030979740
-
Folding funnels and energy landscapes of larger proteins within the capillarity approximation
-
Wolynes, P. Folding funnels and energy landscapes of larger proteins within the capillarity approximation. Proc. Natl. Acad. Sci. USA 94:6170-6175, 1997.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 6170-6175
-
-
Wolynes, P.1
-
21
-
-
0013659665
-
The inherent structure in water
-
Stillinger, F.H., Weber, T.A. The inherent structure in water. J. Phys. Chem. 87:2833-2840, 1983.
-
(1983)
J. Phys. Chem.
, vol.87
, pp. 2833-2840
-
-
Stillinger, F.H.1
Weber, T.A.2
-
22
-
-
0028291376
-
Molecular dynamics simulation of the docking of substrates to proteins
-
Di Nola, A., Roccatano, D., Berendsen, H.J.C. Molecular dynamics simulation of the docking of substrates to proteins. Proteins 19:174-182, 1994.
-
(1994)
Proteins
, vol.19
, pp. 174-182
-
-
Di Nola, A.1
Roccatano, D.2
Berendsen, H.J.C.3
-
23
-
-
84986511247
-
A molecular mechanics/ grid method of evaluation of ligand-receptor interactions
-
Luty, B.A., Wasserman, Z.R., Stouten, P.F.W., Hodge, C.N., Zacharias, M., McCammon, J.A. A molecular mechanics/ grid method of evaluation of ligand-receptor interactions. J. Comput. Chem. 16:454-464, 1995.
-
(1995)
J. Comput. Chem.
, vol.16
, pp. 454-464
-
-
Luty, B.A.1
Wasserman, Z.R.2
Stouten, P.F.W.3
Hodge, C.N.4
Zacharias, M.5
McCammon, J.A.6
-
24
-
-
0031592919
-
Flexible docking of a ligand peptide to a receptor protein by multicanonical molecular dynamics simulation
-
Nakajima, N., Higo, J., Kidera, A., Nakamura, H. Flexible docking of a ligand peptide to a receptor protein by multicanonical molecular dynamics simulation. Chem. Phys. Lett. 278:297-301, 1997.
-
(1997)
Chem. Phys. Lett.
, vol.278
, pp. 297-301
-
-
Nakajima, N.1
Higo, J.2
Kidera, A.3
Nakamura, H.4
-
25
-
-
84943200457
-
A leap-frog algorithm for stochastic dynamics
-
van Gunsteren, W.F., Berendsen, H.J.C. A leap-frog algorithm for stochastic dynamics. Mol. Simulat. 1:173-185, 1988.
-
(1988)
Mol. Simulat.
, vol.1
, pp. 173-185
-
-
Van Gunsteren, W.F.1
Berendsen, H.J.C.2
-
26
-
-
0026869597
-
Langevin dynamics of peptides: The frictional dependence of isomerization rates of N-acetylalanyl-N′-methylamide
-
Loncharich, R.J., Brooks, B.R., Pastor, R.W. Langevin dynamics of peptides: The frictional dependence of isomerization rates of N-acetylalanyl-N′-methylamide. Biopolymers 32:523-535, 1992.
-
(1992)
Biopolymers
, vol.32
, pp. 523-535
-
-
Loncharich, R.J.1
Brooks, B.R.2
Pastor, R.W.3
-
27
-
-
0004161838
-
-
Cambridge: Cambridge University Press: Chapter 10
-
Press, W.H., Flannery, B.P., Teukolsky, S.A., Vetterling, W.T. "Numerical Recipes. The Art of Scientific Computing." Cambridge: Cambridge University Press: Chapter 10, 1989.
-
(1989)
Numerical Recipes. The Art of Scientific Computing
-
-
Press, W.H.1
Flannery, B.P.2
Teukolsky, S.A.3
Vetterling, W.T.4
-
28
-
-
0002833057
-
Docking small ligands in flexible binding sites
-
Apostolakis, J., Plückthun, A., Caflisch, A. Docking small ligands in flexible binding sites. J. Comput. Chem. 19:21-37, 1998.
-
(1998)
J. Comput. Chem.
, vol.19
, pp. 21-37
-
-
Apostolakis, J.1
Plückthun, A.2
Caflisch, A.3
-
29
-
-
0001894605
-
Loop closure via bond scaling and relaxation
-
Zheng, Q., Rosenfeld, R., Vajda, S., DeLisi, C. Loop closure via bond scaling and relaxation. J. Comput. Chem. 14:556-565, 1993.
-
(1993)
J. Comput. Chem.
, vol.14
, pp. 556-565
-
-
Zheng, Q.1
Rosenfeld, R.2
Vajda, S.3
DeLisi, C.4
-
30
-
-
84988103815
-
Computer graphics in real-time docking with energy calculation and minimization
-
Pattabiraman, N., Levitt, M., Ferring, T.E., Langridge, R. Computer graphics in real-time docking with energy calculation and minimization. J. Comput. Chem. 6:432-436, 1985.
-
(1985)
J. Comput. Chem.
, vol.6
, pp. 432-436
-
-
Pattabiraman, N.1
Levitt, M.2
Ferring, T.E.3
Langridge, R.4
-
31
-
-
0025135112
-
Automated docking of substrates to proteins by simulated annealing
-
Goodsell, D.S., Olson, A.J. Automated docking of substrates to proteins by simulated annealing. Proteins 8:195-202, 1990.
-
(1990)
Proteins
, vol.8
, pp. 195-202
-
-
Goodsell, D.S.1
Olson, A.J.2
-
32
-
-
84986432941
-
Automated docking with grid-based energy evaluation
-
Meng, E.C., Schoichet, B.K., Kuntz, I.D. Automated docking with grid-based energy evaluation. J. Comput. Chem. 13:505-524, 1992.
-
(1992)
J. Comput. Chem.
, vol.13
, pp. 505-524
-
-
Meng, E.C.1
Schoichet, B.K.2
Kuntz, I.D.3
-
33
-
-
0030599010
-
A fast flexible docking method using an incremental construction algorithm
-
Rarey, M., Kramer, B., Lengauer, T., Klebe, G. A fast flexible docking method using an incremental construction algorithm. J. Mol. Biol. 261:470-489, 1996.
-
(1996)
J. Mol. Biol.
, vol.261
, pp. 470-489
-
-
Rarey, M.1
Kramer, B.2
Lengauer, T.3
Klebe, G.4
-
34
-
-
0017411710
-
The Protein Data Bank: A computer-based archival file for macromolecular structures
-
Bernstein, F.C., Koetzle, T.F., Williams, T.F. et al. The Protein Data Bank: A computer-based archival file for macromolecular structures. J. Mol. Biol. 112:535-542, 1977.
-
(1977)
J. Mol. Biol.
, vol.112
, pp. 535-542
-
-
Bernstein, F.C.1
Koetzle, T.F.2
Williams, T.F.3
-
35
-
-
0020441466
-
Crystal structures of Eschericha coli and Lactobacillus casei dihydrofolate reductase refined at 1.7 Angstroms resolution. I. General features and binding of methotrexate
-
Bolin, J.T., Filman, D.J., Matthews, D.A., Hamlin, R.C., Kraut, J. Crystal structures of Eschericha coli and Lactobacillus casei dihydrofolate reductase refined at 1.7 Angstroms resolution. I. General features and binding of methotrexate. J. Biol. Chem. 257:13650-13662, 1982.
-
(1982)
J. Biol. Chem.
, vol.257
, pp. 13650-13662
-
-
Bolin, J.T.1
Filman, D.J.2
Matthews, D.A.3
Hamlin, R.C.4
Kraut, J.5
-
36
-
-
0028057975
-
Rational design of potent, bioavailable, nonpeptide cyclic ureas as HIV protease inhibitors
-
Lam, P.Y.S., Jadhav, P.K., Eyermann, C.J. et al. Rational design of potent, bioavailable, nonpeptide cyclic ureas as HIV protease inhibitors. Science 263:380-384, 1994.
-
(1994)
Science
, vol.263
, pp. 380-384
-
-
Lam, P.Y.S.1
Jadhav, P.K.2
Eyermann, C.J.3
-
37
-
-
0023667724
-
Slow- and fast-binding inhibitors of thermolysin display different modes of binding. Crystallographic analysis of extended phosphonamidate transition-state analogues
-
Holden, H.M., Tronrud, D.E., Monzingo, A.F., Weaver, L.H., Matthews, B.W. Slow- and fast-binding inhibitors of thermolysin display different modes of binding. Crystallographic analysis of extended phosphonamidate transition-state analogues. Biochemistry 26:8542-8553, 1987.
-
(1987)
Biochemistry
, vol.26
, pp. 8542-8553
-
-
Holden, H.M.1
Tronrud, D.E.2
Monzingo, A.F.3
Weaver, L.H.4
Matthews, B.W.5
-
38
-
-
0028305457
-
Prediction of pH-dependent properties of proteins
-
Antosiewicz, J., McCammon, J.A., Gilson, M.K. Prediction of pH-dependent properties of proteins. J. Mol. Biol. 238: 415-436, 1994.
-
(1994)
J. Mol. Biol.
, vol.238
, pp. 415-436
-
-
Antosiewicz, J.1
McCammon, J.A.2
Gilson, M.K.3
-
39
-
-
3743136635
-
Thermodynamic linkage between protonation and binding of inhibitors to HIV protease
-
in press
-
Trylska, J., Antosiewicz, J., Geller, M., Hodge, C.N., Klabe, R.M., Head, M.S., Gilson, M.K. Thermodynamic linkage between protonation and binding of inhibitors to HIV protease. Prot. Sci., in press.
-
Prot. Sci.
-
-
Trylska, J.1
Antosiewicz, J.2
Geller, M.3
Hodge, C.N.4
Klabe, R.M.5
Head, M.S.6
Gilson, M.K.7
-
40
-
-
4043171970
-
The GB/SA continuum model for solvation. A fast analytical method for the calculation of approximate Born radii
-
Qiu, D., Shenkin, P.S., Hollinger, F.P., Still, W.C. The GB/SA continuum model for solvation. A fast analytical method for the calculation of approximate Born radii. J. Phys. Chem. 101:3005-3014, 1997.
-
(1997)
J. Phys. Chem.
, vol.101
, pp. 3005-3014
-
-
Qiu, D.1
Shenkin, P.S.2
Hollinger, F.P.3
Still, W.C.4
-
41
-
-
0031779284
-
pKa shifts in small molecules and HIV protease: Electrostatics and conformation
-
Luo, R., Head, M.S., Moult, J., Gilson, M.K. pKa shifts in small molecules and HIV protease: Electrostatics and conformation. J. Am. Chem. Soc. 120:6138-6146, 1998.
-
(1998)
J. Am. Chem. Soc.
, vol.120
, pp. 6138-6146
-
-
Luo, R.1
Head, M.S.2
Moult, J.3
Gilson, M.K.4
-
42
-
-
0026124585
-
Electrostatics and diffusion of molecules in solution: Simulations with the University of Houston Brownian Dynamics program
-
Davis, M.E., Madura, J.D., Luty, B.A., McCammon, J.A. Electrostatics and diffusion of molecules in solution: Simulations with the University of Houston Brownian Dynamics program. Comput. Phys. Commun. 62:187-197, 1991.
-
(1991)
Comput. Phys. Commun.
, vol.62
, pp. 187-197
-
-
Davis, M.E.1
Madura, J.D.2
Luty, B.A.3
McCammon, J.A.4
-
43
-
-
85050521214
-
Biological applications of electrostatic calculations and Brownian dynamics simulations
-
Madura, J.D., Davis, M.E., Gilson, M.K., Wade, R.C., Luty, B.A., McCammon, J.A. Biological applications of electrostatic calculations and Brownian dynamics simulations. Rev. Comput. Chem. 5:229-267, 1994.
-
(1994)
Rev. Comput. Chem.
, vol.5
, pp. 229-267
-
-
Madura, J.D.1
Davis, M.E.2
Gilson, M.K.3
Wade, R.C.4
Luty, B.A.5
McCammon, J.A.6
-
44
-
-
0344778061
-
Semianalytical treatment of solvation for molecular mechanics and dynamics
-
Still, W.C., Tempczyk, A., Hawley, R.C., Hendrickson, T. Semianalytical treatment of solvation for molecular mechanics and dynamics. J. Am. Chem. Soc. 112:6127-6129, 1990.
-
(1990)
J. Am. Chem. Soc.
, vol.112
, pp. 6127-6129
-
-
Still, W.C.1
Tempczyk, A.2
Hawley, R.C.3
Hendrickson, T.4
-
45
-
-
84986534141
-
A rapid method for calculating derivatives of solvent accessible surface areas of molecules
-
Sridharan, S., Nicholls, A., Sharp, K.A. A rapid method for calculating derivatives of solvent accessible surface areas of molecules. J. Comput. Chem. 16:1038-1044, 1995.
-
(1995)
J. Comput. Chem.
, vol.16
, pp. 1038-1044
-
-
Sridharan, S.1
Nicholls, A.2
Sharp, K.A.3
-
46
-
-
0029055313
-
LINUS - A hierarchic procedure to predict the fold of a protein
-
Srinivasan, R., Rose, G.D. LINUS - a hierarchic procedure to predict the fold of a protein. Proteins 22:81-99, 1995.
-
(1995)
Proteins
, vol.22
, pp. 81-99
-
-
Srinivasan, R.1
Rose, G.D.2
-
47
-
-
33748905333
-
Model for aqueous solvation based on class IV atomic charges and first solvation shell effects
-
Chambers, C.C., Hawkins, G.D., Cramer, C.J., Truhlar, D.G. Model for aqueous solvation based on class IV atomic charges and first solvation shell effects. J. Phys. Chem. 100:16385-16398, 1996.
-
(1996)
J. Phys. Chem.
, vol.100
, pp. 16385-16398
-
-
Chambers, C.C.1
Hawkins, G.D.2
Cramer, C.J.3
Truhlar, D.G.4
-
48
-
-
0031553175
-
GB/SA-based continuum solvation model for octanol
-
Best, S.A., Merz, K.M., Reynolds, C.H. GB/SA-based continuum solvation model for octanol. J. Phys. Chem. B 101:10479-10487, 1997.
-
(1997)
J. Phys. Chem. B
, vol.101
, pp. 10479-10487
-
-
Best, S.A.1
Merz, K.M.2
Reynolds, C.H.3
-
49
-
-
0001108120
-
Monte Carlo simulation study on the conformation and interaction of the glycine zwitterion in aqueous solution
-
Watanabe, T., Hashimoto, K., Takase, H., Kikuchi, O. Monte Carlo simulation study on the conformation and interaction of the glycine zwitterion in aqueous solution. Theochem. - J. Mol. Struct. 397:113-119, 1997.
-
(1997)
Theochem. - J. Mol. Struct.
, vol.397
, pp. 113-119
-
-
Watanabe, T.1
Hashimoto, K.2
Takase, H.3
Kikuchi, O.4
-
50
-
-
11644251375
-
Comparison of a GB solvation model with explicit solvent simulations: Potentials of mean force and conformational preferences of alanine dipeptide and 1,2-dichloroethane
-
Scarsi, M., Apostolakis, J., Caflisch, A. Comparison of a GB solvation model with explicit solvent simulations: Potentials of mean force and conformational preferences of alanine dipeptide and 1,2-dichloroethane. J. Phys. Chem. B. 102:3637-3641, 1998.
-
(1998)
J. Phys. Chem. B.
, vol.102
, pp. 3637-3641
-
-
Scarsi, M.1
Apostolakis, J.2
Caflisch, A.3
-
51
-
-
0026721978
-
Monte Carlo docking of oligopeptides to proteins
-
Caflisch, A., Niederer, P., Anliker, M. Monte Carlo docking of oligopeptides to proteins. Proteins 13:223-230, 1992.
-
(1992)
Proteins
, vol.13
, pp. 223-230
-
-
Caflisch, A.1
Niederer, P.2
Anliker, M.3
-
52
-
-
0031337279
-
Evaluation of the molecular configuration integral in all degrees of freedom for the direct calculation of conformational free energies: Prediction of the anomeric free energy of monosaccharides
-
Kolossvary, I. Evaluation of the molecular configuration integral in all degrees of freedom for the direct calculation of conformational free energies: Prediction of the anomeric free energy of monosaccharides. J. Phys. Chem. A 101:9900-9905, 1997.
-
(1997)
J. Phys. Chem. A
, vol.101
, pp. 9900-9905
-
-
Kolossvary, I.1
-
53
-
-
0002689652
-
Thermodynamics of protein folding: A statistical mechanical study of a small all-beta protein
-
Guo, Z.Y., Brooks, C.L. Thermodynamics of protein folding: A statistical mechanical study of a small all-beta protein. Biopolymers 42:745-757, 1997.
-
(1997)
Biopolymers
, vol.42
, pp. 745-757
-
-
Guo, Z.Y.1
Brooks, C.L.2
-
54
-
-
84986435824
-
Docking flexible molecules: A case study of three proteins
-
Judson, R.S., Tan, Y.T., Mori, E., Melius, C., Jaeger, E.P., Treasurywala, A.M., Mathiowetz, A. Docking flexible molecules: A case study of three proteins. J. Comput. Chem. 16:1405-1419, 1995.
-
(1995)
J. Comput. Chem.
, vol.16
, pp. 1405-1419
-
-
Judson, R.S.1
Tan, Y.T.2
Mori, E.3
Melius, C.4
Jaeger, E.P.5
Treasurywala, A.M.6
Mathiowetz, A.7
-
55
-
-
0031552362
-
Development and validation of a genetic algorithm for flexible docking
-
Jones, G., Willett, P., Glen, R.C., Leach, A.R., Taylor, R. Development and validation of a genetic algorithm for flexible docking. J. Mol. Biol. 267:727-748, 1997.
-
(1997)
J. Mol. Biol.
, vol.267
, pp. 727-748
-
-
Jones, G.1
Willett, P.2
Glen, R.C.3
Leach, A.R.4
Taylor, R.5
-
56
-
-
0001139413
-
Automated flexible ligand docking method and its application for database search
-
Makino, S., Kuntz, I.D. Automated flexible ligand docking method and its application for database search. J. Comput. Chem. 18:1812-1825, 1997.
-
(1997)
J. Comput. Chem.
, vol.18
, pp. 1812-1825
-
-
Makino, S.1
Kuntz, I.D.2
-
57
-
-
0027985242
-
Rational automatic search method for stable docking models of protein and ligand
-
Mizutani, M.Y., Tomioka, N., Itai, A. Rational automatic search method for stable docking models of protein and ligand. J. Mol. Biol. 243:310-326, 1994.
-
(1994)
J. Mol. Biol.
, vol.243
, pp. 310-326
-
-
Mizutani, M.Y.1
Tomioka, N.2
Itai, A.3
-
58
-
-
84986492468
-
Flexible ligand docking without parameter adjustment across four ligand-receptor complexes
-
Clark, K.P., Ajay. Flexible ligand docking without parameter adjustment across four ligand-receptor complexes. J. Comput. Chem. 16:1210-1226, 1995.
-
(1995)
J. Comput. Chem.
, vol.16
, pp. 1210-1226
-
-
Clark, K.P.1
Ajay2
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