Structure-based prediction of the conductance properties of ion channels

Faraday Discussions

Volumn 111, Issue , 1999, Pages 185-199

  Smart, Oliver S ^a   Coates, Guy M P ^a   Sansom, Mark S P ^b   Alder, Glenn M ^c   Bashford, C Lindsay ^c  

^a UNIVERSITY OF BIRMINGHAM   (United Kingdom)

^b UNIVERSITY OF OXFORD   (United Kingdom)

^c ST GEORGE'S UNIVERSITY OF LONDON   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ION CHANNEL; PHOSPHOLIPASE C;

ARTICLE; CHEMISTRY; COMPUTER SIMULATION; PREDICTION AND FORECASTING; STRUCTURE ACTIVITY RELATION;

COMPUTER SIMULATION; ION CHANNELS; PHOSPHOLIPASE C; PREDICTIVE VALUE OF TESTS; STRUCTURE-ACTIVITY RELATIONSHIP;

EID: 0032228375     PISSN: 13596640     EISSN: None     Source Type: Journal    
DOI: 10.1039/a806771f     Document Type: Article

References (52)

1. B. Hille, Ionic Channels of Excitable Membranes, 2nd edn Sinauer Associates, Inc., Sunderland, MA, 1992
2. P. D. Adams, I. T. Arkin. D. M. Engelman and A. T. Brunger, Nature (London), Struct. Biol., 1995, 2 154.
3. M. S. P. Sansom, C. Adcock and G. R. South, J. Struct. Biol, 1998, 121, 246.
4. O. S. Smart, J. M. Goodfellow and B. A. Wallace, Biophys. J., 1993, 65, 2455.
5. O. S. Smart, J. Breed, G. R. Smith and M. S. P. Sansom, Biophys. J., 1997, 72, 1109.
6. M. L. Connolly, Science, 1983, 221, 709.
7. B. Roux, in Theory of transport in ion channels, from molecular dynamics simulations to experiments, ed. J. M. Goodfellow, Weinham, 1995.
8. J. Breed, R. Sankararamakrishnan, I. D. Kerr and M. S. P. Sansom, Biophys. J., 1996, 70, 1643.
9. J. E. Hall, J. Gen. Physiol., 1975, 66, 531.
10. D. P. Tieleman and H. J. C. Berendsen, Biophys. J., 1998, 74, 2786.
11. S. W. Cowan, T. Schirmer, G. Rummel, M. Steiert, R. Ghosh, R. A. Pauptit, J. N. Jansonius and J. P. Rosenbusch, Nature (London), 1992, 358, 727.
12. R. Benz, A. Schmid and R. E. W. Hancock, J. Bacteriol., 1985, 162, 722.
13. B. K. Jap and P. J. Wahan, Q. Rev. Biophys., 1990, 23, 367.
14. T. B. Woolf and B. Roux, Proteins, 1996, 24, 92.
15. L. Y. Shen, D. Bassolino and T Stouch, Biophys. J., 1997, 73, 3.
16. M. S. P. Sansom, personal communication.
17. M. Watanabe, J. Rosenbusch, T. Schirmer and M. Karplus, Biophys. J., 1997, 72, 2094.
18. O. V. Krasilnikov, R. Z. Sabirov, V. I. Ternovsky, P. G. Merzliak and J. N. Muratkhodjaev, Fems Microbiology immunology, 1992, 105, 93.
19. Y. E. Korchev, C. L. Bashford, G. M. Alder, J. J. Kasianowicz and C. A. Pasternak, J. Membr. Biol., 1995, 147, 233.
20. O. V. Krasilnikov, J. B. DaCruz, L. N. Yuldasheva, W. A. Varanda and R. A. Nogueira, J. Membr. Biol., 1998, 161, 83.
21. S. M. Bezrukov and I. Vodyanoy, Biophys. J., 1993, 64, 16.
22. E. A. Merritt, S. Sarfaty, F. Vandenakker, C. Lhoir, J. A. Martial and W. G. J. Hol, Protein Sci., 1994, 3, 166.
23. O. V. Krasilnikov, J. N. Muratkhodjaev, S. E. Voronov and Y. V. Yezepchuk, Biochim. Biophys. Acta, 1991, 1067, 166.
24. J. Breed, P. C, Biggin, I. D. Kerr, O. S. Smart and M. S. P. Sansom, Biochim. Biophys. Acta Biomembranes, 1997, 1325, 235.
25. B. A. Wallace, J. Struct. Biol., 1998, 121, 123.
26. R. R. Ketchem, W. Hu and T. A. Cross, Science, 1993, 261, 1457.
27. B. Turano, M. Pear and D. Busath, Biophys. J., 1992, 63, 152.
28. V. B. Myers and D. A. Haydon, Biochim. Biophys. Acta, 1972, 274, 313.
29. J. A. Killian, Biochim. Biophys. Acta, 1992, 1113, 391.
30. S. Bhakdi and J. Tranumjensen, Microbiol. Rev., 1991, 55, 733.
31. L. Z. Song, M. R. Hobaugh, C. Shustak, S. Cheley, H. Bayley and J. E. Gouaux, Science, 1996, 274, 1859.
32. N. Tobkes, B. A. Wallace and H. Bayley, Biochemistry, 1985, 24, 1915.
33. J. A. Gouaux, G. Braha, M. R. Hobaugh, L. Z. Song, S. Cheley, C. Shustak and H. Bayley, Proc. Natl. Acad. Sci. USA, 1994, 91, 12828.
34. A. Valeva, M. Palmer and S. Bhakdi, Biochemistry, 1997, 36, 13298.
35. A. Valeva, J. Pongs, S. Bhakdi and M. Palmer, Biochim. Biophys. Acta Biomembranes, 1997, 1325, 281.
36. C. Petosa, R. J. Collier, K. R. Klimpel, S. H. Leppla and R. C. Liddington, Nature (London), 1997, 385, 833.
37. E. Gouaux, Curr. Opinion Struct. Biol., 1997, 7, 566.
38. R. J. Ward and K. Leonard, J. Struct. Biol., 1992, 109, 129.
39. D. M. Czajkowsky, S. Sheng and Z. Shao, J. Mol. Biol., 1998, 276, 325.
40. Y. Fang, S. Cheley, H. Bayley and J. Yang, Biochemistry, 1997, 36, 9518.
41. A. G. Murzin, A. M. Lesk and C. Chothia, J. Mol. Biol., 1994, 236, 1382.
42. A. G. Murzin, A. M Lesk and C. Chothia, J. Mol. Biol., 1994, 236, 1369.
43. M. S. Weiss and G. E. Schulz, J. Mol. Biol., 1992, 227, 493.
44. T. Schirmer, T. A. Keller, Y. F. Wang and J. P. Rosenbusch, Science, 1995, 267, 512.
45. M. S. P. Sansom and I. D. Kerr, Biophys. J., 1995, 69, 1334.
46. A. T. Brunger, A. Krukowski and J. W. Erickson, Acta Crystallogr., Sect. A, 1990, 46, 585.
47. R. Fletcher, Practical Methods of Optimization: Volume 1 Unconstrained Optimization, John Wiley & Sons, Chichester, 1980.
48. B. R. Brooks, R. E. Bruccoleri, B. D. Olafson, D. J. States, S. Swaminathan and M. Karplus, J. Comput. Chem., 1983, 4, 187.
49. R. A. Laskowski, M. W. Macarthur, D. S. Moss and J. M. Thornton, J. Appl. Crystallogr., 1993, 26, 283.
50. Y. E. Korchev, C. L. Bashford, G. M. Alder, P. Y. Apel, D. T. Edmonds, A. A. Lev, K. Nandi, A. V. Zima and C. A. Pasternak, Faseb, J., 1997, 11, 600.
51. G. Menestrina, J. Membr. Biol., 1986, 90, 177.
52. P. J. Kraulis, J Appl. Crystallogr., 1991, 24, 946.