Organization and evolution of olfactory receptor genes on human chromosome 11

Genomics

Volumn 53, Issue 1, 1998, Pages 56-68

  Buettner, Jill A ^a   Glusman, Gustavo ^b   Ben Arie, Nissim ^b   Ramos, Purita ^a   Lancet, Doron ^b   Evans, Glen A ^a  

^a UNIVERSITY OF TEXAS SOUTHWESTERN MEDICAL CENTER   (United States)

^b WEIZMANN INSTITUTE OF SCIENCE   (Israel)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CHROMOSOME 11; GENE CLUSTER; GENE LOCATION; GENE MAPPING; GENETIC ORGANIZATION; GENETIC VARIABILITY; HUMAN; MOLECULAR EVOLUTION; NUCLEOTIDE SEQUENCE; OLFACTORY RECEPTOR; PHYLOGENY; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RECEPTOR GENE;

EID: 0032191174     PISSN: 08887543     EISSN: None     Source Type: Journal    
DOI: 10.1006/geno.1998.5422     Document Type: Article

References (57)

1. Altschul S. F., Gish W., Miller W., Myers E. W., Lipman D. J. Basic local alignment search tool. J. Mol. Biol. 215:1990;403-410.
2. Asai H., Kasai H., Matsuda Y., Yamazaki N., Nagawa F., Sakano H., Tsuboi A. Genomic structure and transcription of a murine odorant receptor gene: Differential initiation of transcription in the olfactory and testicular cells. Biochem. Biophys. Res. Commun. 221:1996;240-247.
3. Ausubel F. M., Brent R., Kingston R. E., Moore D. D., Seidman J. G., Smith J. A., Struhl K. Current Protocols in Molecular Biology. 1989;Wiley Interscience, New York.
4. Barth A. L., Justice N. J., Ngai J. Asynchronous onset of odorant receptor expression in the developing zebrafish olfactory system. Neuron. 16:1996;23-34.
5. Ben-Arie N., Lancet D., Taylor C., Khen M., Walker N., Ledbetter D. H., Carrozzo R., Patel K., Sheer D., Lehrach H., North M. A. Olfactory receptor gene cluster on human chromosome 17: Possible duplication of an ancestral receptor repertoire. Hum. Mol. Genet. 3:1994;229-235.
6. Boguski M. S., Lowe T. M., Tolstoshev C. M. dbEST - Database for "expressed sequence tags." Nat. Genet. 4:1993;332-333.
7. Buck L., Axel R. A novel multigene family may encode odorant receptors: A molecular basis for odor recognition. Cell. 65:1991;175-187.
8. Bunn H. F., Forget B. G. Hemoglobin: Molecular, Genetic, and Clinical Aspects. 1986;Saunders, Philadelphia.
9. Chess A., Simon I., Cedar H., Axel R. Allelic inactivation regulates olfactory receptor gene expression. Cell. 78:1994;823-834.
10. Cohen D., Chumakov I., Weissenbach J. A first-generation physical map of the human genome. Nature. 366:1993;698-701.
11. Collins F. S., Cole J. L., Lockwood W. K., Iannuzzi M. C. The deletion in both common types of hereditary persistence of fetal hemoglobin is approximately 105 kilobases. Blood. 70:1987;1797-1803.
12. Craig J. M., Bickmore W. A. The distribution of CpG islands in mammalian chromosomes. Nat. Genet. 7:1994;376-382.
13. Crowe M. L., Perry B. N., Connerton I. F. Olfactory receptor-encoding genes and pseudogenes are expressed in humans. Gene. 169:1996;247-249.
14. Denhardt D. T. A membrane-filter technique for the detection of complementary DNA. Biochem. Biophys. Res. Commun. 23:1966;641.
15. Drutel G., Arrang J. M., Diaz J., Wisnewsky C., Schwartz K., Schwartz J. C. Cloning of OL1, a putative olfactory receptor and its expression in the developing rat heart. Recept. Channels. 3:1995;33-40.
16. Fan W., Liu Y.-C., Parimoo S., Weissman S. M. Olfactory receptor-like genes are located in the human major histocompatability complex. Genomics. 27:1995;119-123.
17. Feingold E. A., Forget B. G. The breakpoint of a large deletion causing hereditary persistence of fetal hemoglobin occurs within an erythroid DNA domain remote from the β-globin gene cluster. Blood. 74:1989;2178-2186.
18. Freitag J., Krieger J., Strotmann J., Breer H. Two classes of olfactory receptors inXenopus laevis. Neuron. 15:1995;1383-1392.
19. Glusman G., Clifton S., Roe B., Lancet D. Sequence analysis in the olfactory receptor gene cluster on human chromosome 17: Recombinatorial events affecting receptor diversity. Genomics. 37:1996;147-160.
20. Gomez G., Restrepo D., Rawson N., Lowry L. D., Keane W. M., Rothstein J. L. Induction of differentiation of human olfactory neuroblastoma cells into odorant-responsive cells. Neuroscience. 74:1996;567-577.
21. Ioannou P. A., Amemiya C. T., Garnes J., Kroisel P. M., Shizuya H., Chen C., Batzer M. A., de Jong P. J. A new bacteriophage P1-derived vector for the propagation of large human DNA fragments. Nat. Genet. 6:1994;84-89.
22. Issel-Tarver L., Rine J. Organization and expression of canine olfactory receptor genes. Proc. Nat. Acad. Sci. USA. 93:1996;10897-10902.
23. Issel-Tarver L., Rine J. The evolution of mammalian olfactory receptor genes. Genetics. 145:1997;185-195.
24. James M. R., Richard C. W. I., Schott J.-J., Yousry C., Clark K., Bell J., Terwilliger J. D., Hazan J., Dubay C., Vignal A., Agrapart M., Imai T., Nakamura Y., Polymeropoulos M., Weissenbach J., Cox D. R., Lathrop G. M. A radiation hybrid map of 506 STS markers spanning human chromosome 11. Nat. Genet. 8:1994;70-76.
25. Kosteas T., Constantopoulou M., Moschonas N., Anagnou N. P. Identification of a new enhancer element 53kb 3′ of the β-globin gene. Clin. Res. 39:1991.
26. Kosteas T., Palena A., Anagnou N. P. Molecular cloning of the breakpoints of the hereditary persistence of fetal hemoglobin type-6 (HPFH-6) deletion and sequence analysis of the novel juxtaposed region from the 3′ end of the β-globin gene cluster. Hum. Genet. 100:1997;441-445.
27. Krumlauf R. Evolution of the vertebrate Hox homeobox genes. BioEssays. 14:1992;245-252.
28. Kudrycki K., Stein-Izsak C., Behn C., Grillo M., Akeson R., Margolis F. L. Olf-1-binding site: Characterization of an olfactory neuron-specific promoter motif. Mol. Cell. Biol. 13:1993;3002-3014.
29. Lancet D., Ben-Arie N. Olfactory receptors. Curr. Biol. 3:1993;668-674.
30. Levy N. S., Bakalyar H. A., Reed R. R. Signal transduction in olfactory neurons. J. Steroid Biochem. Mol. Biol. 39:1991;633-637.
31. Mombaerts P., Wang F., Dulac C., Chao S. K., Nemes A., Mendelsohn M., Edmondson J., Axel R. Visualizing an olfactory sensory map. Cell. 87:1996;675-686.
32. Nef S., Allaman I., Fiumelli H., De Castro E., Nef P. Olfaction in birds: Differential embryonic expression of nine putative odorant receptor genes in the avian olfactory system. Mech. Dev. 55:1996;65-77.
33. Nef S., Nef P. Olfaction: Transient expression of a putative odorant receptor in the avian notochord. Proc. Natl. Acad. Sci. USA. 94:1997;4766-4771.
34. Nei M. Phylogenetic analysis in molecular evolutionary genetics. Annu. Rev. Genet. 30:1996;371-403.
35. Ngai J., Dowling M. M., Buck L., Axel R., Chess A. The family of genes encoding odorant receptors in the channel catfish. Cell. 72:1993a;657-666.
36. Ngai J., Chess A., Dowling M. M., Necles N., Macagno E. R., Axel R. Coding of olfactory information: Topography of odorant receptor expression in the catfish olfactory epithelium. Cell. 72:1993b;667-680.
37. Nizetic D., Zehetner G., Monaco A. P., Lisa G., Young B. D., Lehrach H. Construction, arraying and high-density screening of large insert libraries of human chromosomes X and 21: Their potential use as reference libraries. Proc. Nat. Acad. Sci. USA. 88:1991;3233-3237.
38. Page R. D. M. TreeView: An application to display phylogenetic trees on personal computers. Comput. Appl. Biosci. 12:1996;357-358.
39. Parmentier M., Libert F., Schurmans S., Schiffman S., Lefort A., Eggerickx D., Ledent C., Mollereau C., Gerard C., Perret J., Grootegoed A., Vassart G. Expression of members of the putative olfactory receptor gene family in mammalian germ cells. Nature. 355:1992;453-455.
40. Pavlou O., Kosteas T., Palena A., Moschonas N., Anagnou N. P. Complete sequencing and functional analysis of the HPFH-6 enhancer: Detection of multiple motifs for transcription factors and identification of an open reading frame. Blood. 88:1996.
41. Qin S., Zhang J., Isaacs C. M., Nagafuchi S., Jani Sait S. N., Abel K. J., Higgins M. J., Nowak N. J., Shows T. B. A chromosome 11 YAC library. Genomics. 16:1993;580-585.
42. Quackenbush J., Davies C., Bailis J. M., Khristich J. V., Diggle K., Marchuck Y., Tobin J., Clark S. P., Rodkins A., Marcano S., Churukian A. C., Hutchinson J. S., Probst S., Romberg L., Wei Y. H., Nowak N. J., Garner H. R., Smith M. W., Selleri L., Evans G. A. An STS content map of human chromosome 11. Genomics. 29:1995;512-525.
43. Reed R. R. The molecular basis of sensitivity and specificity in olfaction. Semin. Cell Biol. 5:1994;33-38.
44. Ressler K. J., Sullivan S. L., Buck L. B. A zonal organization of odorant receptor gene expression in the olfactory epithelium. Cell. 73:1993;597-609.
45. Sambrook J., Fritsch E. F., Maniatis T. Molecular Cloning: A Laboratory Manual. 1989;Cold Spring Harbor Laboratory Press, Cold Spring Harbor.
46. Selbie L. A., Townsend-Nicholson A., Iismaa T. P., Shine J. Novel G protein-coupled receptors: A gene family of putative human olfactory receptor sequences. Mol. Brain Res. 13:1992;159-163.
47. Smith M. W., Clark S. P., Hutchinson J. S., Wei Y. H., Churukian A. C., Daniels L. B., Diggle K. L., Gen M. W., Romo A. J., Lin Y., Selleri L., McElligott D. L., Evans G. A. A sequence-tagged site map of human chromosome 11. Genomics. 17:1993;699-725.
48. Smith M. W., Holmsen A. L., Wei Y. H., Peterson M., Evans G. A. Genomic sequence sampling: A strategy for high resolution sequence-based physical mapping of complex genomes. Nat. Genet. 7:1994;40-47.
49. Strotmann J., Wanner I., Helfrich T., Beck A., Meinken C., Kubick S., Breer H. Olfactory neurones expressing distinct odorant receptor subtypes are spatially segregated in the nasal epithelium. Cell Tissue Res. 276:1994;429-438.
50. Sullivan S. L., Adamson M. C., Ressler K. J., Kozak C. A., Buck L. The chromosomal distribution of mouse odorant receptor genes. Proc. Nat. Acad. Sci. USA. 93:1996;884-888.
51. Thomas M. B., Haines S. L., Akeson R. A. Chemoreceptors expressed in taste, olfactory, and male reproductive tissues. Gene. 178:1996;1-5.
52. Thompson J. D., Gibson T. J., Plewniak F., Jeanmougin F., Higgens D. G. The CLUSTALX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25:1997;4876-4882.
53. Tonk V., Schneider N. R., Delgado M. R., Mao J.-I., Schultz R. A. Identification and molecular confirmation of a small chromosome 10q duplication [dir dup(10)(q24.2-q24.3)] inherited from a mother mosaic for the abnormality. Am. J. Med. Genet. 61:1996;16-20.
54. Vanderhaeghen P., Schurmans S., Vassart G., Parmentier M. Olfactory receptors are displayed on dog mature sperm cells. J. Cell Biol. 123:1993;1441-1452.
55. Vanderhaeghen P., Schurmans S., Vassart G., Parmentier M. Specific repertoire of olfactory receptor genes in the male germ cells of several mammalian species. Genomics. 39:1997;239-246.
56. Vassar R., Ngai J., Axel R. Spatial segregation of odorant receptor expression in the mammalian olfactory epithelium. Cell. 74:1993;309-318.
57. Weth F., Nadler W., Korsching S. Nested expression domains for odorant receptors in zebrafish olfactory epithelium. Proc. Nat. Acad. Sci. USA. 93:1996;13321-13326.