Logitlinear models for the prediction of splice sites in plant pre-mRNA sequences

Nucleic Acids Research

Volumn 24, Issue 23, 1996, Pages 4709-4718

  Kleffe, Jürgen ^a   Hermann, Klaus ^a   Vahrson, Wolfgang ^a   Wittig, Burkhardt ^a   Brendel, Volker ^b  

^a FREIE UNIVERSITÄT BERLIN   (Germany)

^b STANFORD UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; PLANT RNA; RNA PRECURSOR;

ARTICLE; CONSENSUS SEQUENCE; CONTROLLED STUDY; EXON; INTRON; MODEL; NONHUMAN; PREDICTION; PRIORITY JOURNAL; RNA SEQUENCE; RNA SPLICING;

VERTEBRATA;

EID: 0029822410     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/24.23.4709     Document Type: Article

References (34)

1. Gelfand, M.S. (1995) J Comp. Biol. 2, 87-115.
2. Burset, M. and Guigó, R. (1996) Genomics 34, 353-367.
3. Fields, C.A. and Soderlund, C.A. (1990) Comp. Appl. Biol. Sci. 6, 263-270.
4. Guigó, R., Knudsen, S., Drake, N. and Smith, T. (1992) J. Mol. Biol. 226, 141-157.
5. Snyder, E.E. and Stormo, G.D. (1993) Nucleic Acids Res. 21, 607-613.
6. Dong, S. and Searls, D.B. (1994) Genomics 23, 540-551.
7. Brunak, S., Engelbrecht, J. and Knudsen, S. (1991) J. Mol. Biol. 220, 49-65.
8. Sirajuddin, K. Nagashima, T. and Ono, K. (1995) Comp. Appl. Biol. Sci. 11, 349-359.
9. Filipowicz, W., Gniadkowski, M., Klahre, U. and Liu, H.-X. (1995) Pre-mRNA splicing in plants. In Lamond, A.I. (ed.) Pre-mRNA Processing. R.G. Landes Publishers, Georgetown, TX, pp. 65-77.
10. Luehrsen, K.R., Taha, S. and Walbot, V. (1994) Prog. Nucleic Acids Res. Mol. Biol. 47, 149-193.
11. Goodall, G.J. and Filipowicz, W. (1989) Cell 58, 473-483.
12. Lou, H., McCullough, A.J. and Schuler, M.A. (1993) Mol. Cell. Biol. 13, 4485-4493.
13. Luehrsen, K.R. and Walbot, V. (1994) Genes Dev. 8, 1117-1130.
14. Hebsgaard, S.M., Korning, P.G., Tolstrup, N., Engelbrecht, J., Rouzé, P. and Brunak, S. (1996) Nucleic Acids Res. 24, 3439-3452.
15. Brendel, V. (1992) Mathl. Comput. Modelling 16 (6/7), 37-43.
16. Korning, P.G., Hebsgaard, S.M., Rouzé, P. and Brunak, S. (1996) Nucleic Acids Res. 24, 316-320.
17. Kondrakhin, Y.V., Kel, A.E., Kolchanov, N.A., Romashchenko, A.G. and Milanesi, L. (1995) Comp. Appl. Biol. Sci. 11, 477-488.
18. Chen, Q.K., Hertz, G.Z. and Stormo, G.D. (1995) Comp. Appl. Biol. Sci. 11, 563-566.
19. Prestridge, D.S. (1995) J. Mol. Biol. 249, 923-932.
20. Santner, T.J. and Duffy, D.E. (1989) The Statistical Analysis of Discrete Data. Springer-Verlag, New York.
21. Christensen, R. (1990) Log-linear Models. Springer-Verlag, New York.
22. Tue Tjur (1992) StatUnit: Turbo Pascal unit for statistical analysis. Institute of Mathematical Statistics, University of Copenhagen. http://www.math.ku.dk/∼tuetjur.
23. Kleffe, J., Hermann, K., Gunia, W., Vahrson, W. and Wittig, B. (1995) Comp. Appl. Biol. Sci. 11, 449-455.
24. McCullough, A.J., Lou, H. and Schuler, M.A. (1993) Mol. Cell. Biol. 13, 1323-1331.
25. Lou, H., McCullough, A.J. and Schuler, M.A. (1993) Plant J. 3, 393-403.
26. Luehrsen, K.R. and Walbot, V. (1994) Plant Mol. Biol. 24, 449-463.
27. Kendall, M. and Gibbons, J.D. (1990) Rank Correlation Methods. 5th edition, Edward Arnold, London.
28. White, O., Soderlund, C., Shanmugan, P. and Fields, C. (1992) Plant Mol. Biol. 19, 1057-1064.
29. Tanner, M. and Wong, W.H. (1987) J. Am. Stat. Assoc. 82, 528-540.
30. Sinibaldi, R.M. and Mettler, I.J. (1992) Prog. Nucleic Acids Res. Mol. Biol. 42, 229-257.
31. Woolson, R.F. (1987) Statistical Methods for the Analysis of Biomedical Data. John Wiley & Sons, New York.
32. Simpson, C.G., Clark, G., Davidson, D., Smith, P. and Brown, J.W.S. (1996) Plant J. 9, 369-380.
33. Liu, H.-X. and Filipowicz, W. (1996) Plant J. 9, 381-389.
34. Berget, S.M. (1995) J Biol. Chem. 270, 2411-2414.