Pseudouridine and ribothymidine formation in the tRNA-like domain of turnip yellow mosaic virus RNA

Nucleic Acids Research

Volumn 26, Issue 17, 1998, Pages 3991-3997

  Becker, H F ^a   Motorin, Y ^a   Florentz, C ^b   Giege R ^b   Grosjean, H ^a  

^a CNRS   (France)

^b INSTITUT DE BIOLOGIE MOLÉCULAIRE ET CELLULAIRE   (France)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID TRANSFER RNA LIGASE; PSEUDOURIDINE; THYMIDINE DERIVATIVE; TRANSFER RNA; VIRUS RNA;

ARTICLE; CONTROLLED STUDY; ENZYME SPECIFICITY; ENZYME SUBSTRATE COMPLEX; NONHUMAN; PRIORITY JOURNAL; RNA STRUCTURE; TURNIP YELLOW MOSAIC VIRUS; YEAST;

BRASSICA RAPA SUBSP. RAPA; RNA VIRUSES; TURNIP YELLOW MOSAIC VIRUS;

EID: 0032168449     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/26.17.3991     Document Type: Article

References (51)

1. Haenni, A.L., Joshi, S. and Chapeville, F. (1982) Prog. Nucleic. Acid. Res. Mol. Biol., 27, 85-104.
2. Mans, R.M., Pleij, C.W. and Bosch, L. (1991) Eur. J. Biochem., 201, 303-324.
3. Florentz, C. and Giegé,R. (1995) In Söll,D. and RajBhandary,U. (eds), tRNA: Structure, Biosynthesis and Function. ASM Press, Washington,D.C., pp. 141-163.
4. Marcu, K. and Dudock, B. (1975) Biochem. Biophys. Res. Commun., 62, 798-807.
5. Lesiewicz, J. and Dudock, B. (1978) Biochim. Biophys. Acta, 520, 411-418.
6. Keith, J.M., Winters, E.M. and Moss, B. (1980) J. Biol. Chem., 255, 4636-4644.
7. Sakamoto, K. and Okada, N. (1985) Nucleic Acids Res., 13, 7195-7206.
8. Grosjean, H., Sprinzl, M. and Steinberg, S. (1995) Biochimie, 77, 139-141.
9. Silberklang, M., Prochiantz, A., Haenni, A.L. and Rajbhandary, U.L. (1977) Eur. J. Biochem., 72, 465-478.
10. Florentz, C., Mengual, R., Briand, J.P. and Giegé,R. (1982) Eur. J. Biochem., 123, 89-93.
11. Rietveld, K., Pleij, C.W. and Bosch, L. (1983) EMBO J., 2, 1079-1085.
12. Dumas, P., Moras, D., Florentz, C., Giegé,R., Verlaan, P., Van Belkum,A. and Pleij, C.W. (1987) J. Biomol. Struct. Dyn., 4, 707-728.
13. Kolk, M.H., van der Graaf,M., Wijmenga, S.S., Pleij, C.W.A., Heus, H.A. and Hilbers, C.W. (1998) Science, 280, 434-438.
14. Becker, H.D., Giegé,R. and Kern, D. (1996) Biochemistry, 35, 7447-7458.
15. Dreher, T.W., Florentz, C. and Giegé,R. (1988) Biochimie, 70, 1719-1727.
16. Sayers, J.R. and Eckstein, F. (1989) In Creighton,T.E. (ed.), Protein Function: A Practical Approach. IRL Press, Oxford, UK, pp. 279-295.
17. Auxilien, S., Crain, P.F., Trewyn, R.W. and Grosjean, H. (1996) J. Mol. Biol., 262, 437-458.
18. Motorin, Y., Keith, G., Simon, C., Foiret, D., Simos, G., Hurt, E. and Grosjean, H. (1998) RNA, 4, 865-869.
19. Becker, H.F., Motorin, Y., Planta, R.J. and Grosjean, H. (1997) Nucleic Acids Res., 25, 4493-4499.
20. Arluison, V., Hountondji, C., Robert, B. and Grosjean, H. (1998) Biochemistry, 37, 7268-7276.
21. Bakin, A. and Ofengand, J. (1993) Biochemistry, 32, 9754-9762.
22. Rietveld, J.C., Van Poelgeest,R., Pleij, C.W., Van Boom,J.H. and Bosch, L. (1982) Nucleic Acids Res., 10, 1929-1946.
23. van Belkum, A., Abrahams, J.P., Pleij, C.W. and Bosch, L. (1985) Nucleic Acids Res., 13, 7673-7686.
24. Sprinzl, S., Horn, C, Brown, M., Ioudovitch, A. and Steinberg, S. (1998) Nucleic Acids Res., 26, 148-153.
25. Jiang, H.-Q., Motorin, Y.A., Jin, Y.-X. and Grosjean, H. (1997) Nucleic Acids Res., 25, 2694-2701.
26. Edqvist, J., Blomqvist, K. and Sträby,K.B. (1994) Biochemistry, 33, 9546-9551.
27. Edqvist, J., Sträby,K.B. and Grosjean, H. (1995) Biochimie, 77, 54-61.
28. Becker, H.F., Motorin, Y, Sissler, M., Florentz, C. and Grosjean, H. (1997) J. Mol. Biol., 274, 505-518.
29. Simos, G., Tekotte, H., Grosjean, H., Segref, A., Sharma, K., Tollervey, D. and Hurt, E.C (1996) EMBO J., 15, 2270-2284.
30. Florentz, C., Briand, J.P., Romby, P., Hirth, L., Ebel, J.P. and Giegé,R. (1982) EMBO J., 1, 269-276.
31. Florentz, C. and Giegé,R. (1986) J. Mol. Biol., 191, 117-130.
32. Gu, X.R., Ivanetich, K.M. and Santi, D.V. (1996) Biochemistry, 35, 11652-11659.
33. Grosjean, H., Edqvist, J., Sträby,K.B. and Giegé,R. (1996) J. Mol. Biol., 255, 67-85.
34. Gu, X., Yu, M., Ivanetich, K.M. and Santi, D.V (1998) Biochemistry, 37, 339-343.
35. Romby, P., Carbon, P., Westhof, E., Ehresmann, C., Ebel, J.-P., Ehresmann, B. and Giegé,R. (1987) J. Biomol Struct. Dyn., 5, 669-687.
36. Yao, L.J., James, T.L., Kealey, J.T., Santi, D.V. and Schmitz, U. (1997) J. Biomol. NMR, 9, 229-244.
37. Szweykowska-Kulinska,Z., Senger, B., Keith, G., Fasiolo, F. and Grosjean, H. (1994) EMBO J., 13, 4636-4644.
38. Grosjean, H., Szweykowska-Kulinska,Z., Motorin, Y., Fasiolo, F. and Simos, G. (1997) Biochimie, 79, 293-302.
39. Gu, X., Ofengand, J. and Santi, D.V (1994) Biochemistry, 33, 2255-2261.
40. Gu, X. and Santi, D.V (1991) Biochemistry, 30, 2999-3002.
41. Monroe, S.S. and Schlesinger, S. (1983) Proc. Natl Acad. Sci. USA 80, 3279-3283.
42. Ames, B.N., Tsang, T.H., Buck, M. and Christman, M.F. (1980) Proc. Natl Acad. Sci. USA, 80, 5240-5242.
43. Graffe, M., Dondon, J., Caillet, J., Romby, P., Ehresmann, C., Ehresmann, B. and Springer, M. (1992) Science, 255, 994-996.
44. Romby,P., Caillet,J., Ebel,C., Sacerdo,C., Graffe,M., Eyermann,F., Brunel, C., Moine, H., Ehresmann, C., Ehresmann, B., et al. (1996) EMBO J., 15, 5976-5987.
45. Sakamoto, K. and Okada, N. (1985) J. Mol. Evol., 22, 134-140.
46. Caprara, M.G., Lehnert, V., Lambowitz, A.M. and Westhof, E. (1996) Cell, 1135-1145.
47. Komine, Y, Kitabatake, M., Yokogawa, T., Nishikawa, K. and Inokuchi, H. (1994) Proc. Natl Acad. Sci. USA, 91, 9223-9227.
48. Felden, B., Himeno, H., Muto, A., McCutcheon, J.P., Atkins, J.F. and Gesteland, R. (1997) RNA, 3, 89-103.
49. Muto, A., Ushida, C. and Himeno, H. (1998) Trends Biochem. Sci., 23, 25-29.
50. Felden, B., Hanawa, K., Atkins, J.F., Himeno, H., Muto, A., Gesteland, R. F., McCloskey, J.A. and Crain, P.F. (1998) EMBO J., 17, 3188-3196.
51. Keith, G. (1995) Biochimie, 77, 142-144.