The normal association between newly replicated DNA and the nuclear matrix is abolished in cells infected by herpes simplex virus type 1

Research in Virology

Volumn 149, Issue 4, 1998, Pages 195-208

  Aranda Anzaldo, A ^a  

^a UNIVERSIDAD AUTÓNOMA DEL ESTADO DE MÉXICO   (Mexico)

Author keywords

Chromatin; DNA; Herpesvirus; HSV1; Loops; Nuclear matrix; Replication

Indexed keywords

ARTICLE; CELL NUCLEUS MATRIX; DNA DETERMINATION; DNA REPLICATION; HELA CELL; HERPES SIMPLEX VIRUS 1; HUMAN; HUMAN CELL; NONHUMAN; PRIORITY JOURNAL; VIRUS REPLICATION;

DNA VIRUSES; HERPES; HERPESVIRIDAE; HUMAN HERPESVIRUS 1;

EID: 0032128941     PISSN: 09232516     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0923-2516(98)80001-0     Document Type: Article

References (57)

1. Aelen, J.M.A., Opstelten, R.J.G. & Wanka, F. (1983), Organization of DNA replication in Physarum. Attachment of origins of replicons and replication forks to the nuclear matrix. Nucleic Acids Res., 11, 1181-1196.
2. Aranda-Anzaldo, A. (1986), Properties of DNA in cells infected by herpes simplex virus type 1. Ph.D. Thesis, University of Cambridge, Cambridge, UK.
3. Aranda-Anzaldo, A. (1989), On the role of chromatin higher-order structure and mechanical interactions in the regulation of gene expression. Speculat. Sci. Technol., 12, 163-176.
4. Aranda-Anzaldo, A. (1992a), Early induction of DNA single-stranded breaks in cells infected by herpes simplex virus type 1. Arch. Virol., 122, 317-330.
5. Aranda-Anzaldo, A. (1992b), Altered chromatin higher-order structure in cells infected by herpes simplex virus type 1. Arch. Virol., 124, 245-253.
6. Aranda-Anzaldo, A. & Dent, M.A.R. (1997), Loss of DNA loop supercoiling and organization in cells infected by herpes simplex virus type 1. Res. Virol., 148, 397-408.
7. Benbow, R.M., Zhao, J. & Larson, D.D. (1992), On the nature of origins of DNA replication in eukaryotes. BioEssays, 14, 661-670.
8. Berezney, R. & Coffey, D.S. (1975), The nuclear protein matrix: association with newly synthesized DNA. Science, 189,291-293.
9. Berezney, R. & Coffey, D.S. (1977), Nuclear matrix: isolation and characterization of a framework structure from rat liver nuclei. J. Cell Biol., 73, 616-637.
10. Bode, J., Stenger-Iber, M., Kay, V., Schalke, T. & Dietz-Pfeilstetter, A. (1996), Scaffold/matrix-attached regions: topological switches with multiple regulatory functions. Crit. Rev. Eukaryotic Gen. Expres., 6(2&3), 115-138.
11. Bortner, C.D., Oldenburg, N.B.E. & Cidlowski, J.A. (1995), The role of DNA fragmentation in apoptosis. Trends Cell Biol., 5, 21-26.
12. Boulikas, T. & Kong, C.F. (1993), Multitude of inverted repeats characterize a class of anchorage sites of chromatin loops to the nuclear matrix. J. Cell. Biochem., 53, 1-12.
13. Boulikas, T. (1995), Chromatin and prediction of MAR sequences, in "Structural and functional organization of the nuclear matrix" (Jeon, K.W. & Berezney, R., eds.). Int. Rev. Cytol., 162A, chap. 8.
14. Buongiorno-Nardelli, M., Micheli, G., Carri, M.T. & Marilley, M. (1982), A relationship between replicon size and supercoiled loop domains in the eukaryotic genome. Nature, 298, 100-102.
15. Bush, M., Yaeger, D.R., Weisshart, K., Marcy, A.I., Coen, D.M. & Knipe, D.M. (1991), Correct intranuclear localization of HSV DNA polymerase requires the viral ICP8 DNA-binding protein. J. Virol., 65, 1082-1089.
16. Carri, M.T., Micheli, G., Grazaiano, E., Pace, T. & Buongiorno-Nardelli, M. (1986), The relationship between chromosomal origins of replication and the nuclear matrix during the cell cycle. Exp. Cell Res., 164, 426-436.
17. Cook, P.R., Brazell, I.A. & Jost, E. (1976), Characterization of nuclear structures containing superhelical DNA. J. Cell Sci., 22, 303-324.
18. Cook, P.R. (1991), The nucleoskeleton and the topology of DNA replication. Cell, 66, 627-635.
19. de Bruyn Kops, A & Knipe, D.M. (1988), Formation of DNA replication structures in herpes virus-infected cells requires a viral DNA binding protein. Cell, 55, 857-868.
20. de Bruyn Kops, A. & Knipe, D.M. (1994), Preexisting nuclear architecture defines the intranuclear location of herpesvirus DNA replication structures. J. Virol., 68, 3512-3526.
21. Denhardt, D.T. & Faust, E.A. (1985), Eukaryotic DNA replication. BioEssays, 2, 148-153.
22. Dijkwel, P.A., Mullenders, L. & Wanka, F. (1979), Analysis of the attachment of replicating DNA to the nuclear matrix in mammalian interphase nuclei. Nucleic Acids Res., 6, 219-230.
23. Dijkwel, P.A., Wenink, P.W. & Poddighe, J. (1986), Permanent attachment of replication origins to the nuclear matrix in BHK cells. Nucleic Acids Res., 14, 3241-3249.
24. Freeman, L.A. & Garrard, W.T. (1992), DNA supercoiling in chromatin structure and gene expression. Crit. Rev. Eukaryotic Gene Expression, 2, 165-209.
25. Hozák, P., Bassim-Hassan, A., Jackson, D.A. & Cook, P.R. (1993), Visualization of replication factories attached to a nucleoskeleton. Cell, 73, 361-373.
26. Jack, R.S. & Eggert, H. (1992), The elusive nuclear matrix. Eur. J. Biochem., 209, 503-509.
27. Jackson, D.A. & Cook, P.R. (1985), Transcription occurs at a nucleoskeleton. EMBO J., 4, 919-925.
28. Jackson, D.A. & Cook, P.R. (1986), Replication occurs at a nucleoskeleton. EMBO J., 5, 1403-1410.
29. Jackson, D.A. (1991), Structure-function relationships in eukaryotic nuclei. BioEssays, 13, 1-10.
30. Jackson, D.A., Dolle, A., Robertson, G. & Cook, P.R. (1992), The attachment of chromatin loops to the nucleoskeleton. Cell Biol. Int. Rep., 16, 687-696.
31. Jiménez-García, L. & Spector, D.L. (1993), In vivo evidence that trancription and splicing are coordinated by a recruiting mechanism. Cell, 73, 47-59.
32. Kalandadze, A.G., Razin, S.V. & Georgiev, G.P. (1988), Cloning and analysis of DNA fragments permanently attached to the nuclear matrix. Dokl. Akad. Nauk. SSSR, 300, 1001-1005.
33. Kalandadze, A.G., Bushara, S.A., Vassetzky, Y.S. & Razin, S.V. (1990), Characterization of DNA pattern in the site of permanent attachment to the nuclear matrix located in the vicinity of replication origin. Biochem. Biophys. Res. Commun., 168, 9-15.
34. Koyama, A.H. &Miwa, Y. (1997), Suppression of apoptotic DNA fragmentation in herpes simplex virus type 1-infected cells. J. Virol., 71, 2567-2571.
35. Krude, T. & Elgin, S.C. (1996), Chromatin: pushing nucleosomes around. Curr. Biol., 6, 511-515.
36. Kwong, A.D. & Frenkel, N. (1987), Herpes simplex virus-infected cells contain a function(s) that destabilizes both host and viral mRNAs. Proc. Nat. Acad. Sci. USA, 84, 1926-1930.
37. Leopardi, R. & Roizman, B. (1996), The herpes simplex virus major regulatory protein ICP4 blocks apoptosis induced by the virus or by hyperthermia. Proc. Nat. Acad. Sci. USA, 93, 9583-9587.
38. Leopardi, R., Van Sant, C. & Roizman, B. (1997), The herpes simplex virus 1 protein kinase US3 is required for protection from apoptosis induced by the virus. Proc. Nat. Acad. Sci. USA, 94, 7891-7896.
39. McCready, S.J., Godwin, J., Mason, D.W., Brazell, I.A. & Cook, P.R. (1980), DNA is replicated at the nuclear cage. J. Cell Sci., 46, 365-386.
40. Mistelli, T., Cáceres, J.F. & Spector, D.L. (1997), The dynamics of a pre-mRNA splicing factor in living cells. Nature, 387, 523-527.
41. Newton, A., Dendy, P.P., Smith, C.L. & Wildy, P. (1962), A pool size problem associated with the use of tritiated thymidine. Nature, 194, 886-887.
42. Newton, A. (1964), Synthesis of DNA in cells infected by virulent DNA viruses, in "Acidi nucleici e loro funzione biologica" (pp. 109-128). Istituto Lombardo-Fondazione Baselli, Pavia.
43. O'Neill, F.J. & Miles, C.P. (1969), Chromosome changes in human cells induced by herpes simplex types 1 and 2. Nature, 223, 851-852.
44. Pardoll, D.M., Vogelstein, B. & Coffey, D.S. (1980), A fixed site of DNA replication in eukaryotic cells. Cell, 19, 527-536.
45. Pienta, K.J., Getzenberg, R.H. & Coffey, D.S. (1991), Cell structure and DNA organization. Crit. Rev. Eukaryotic Gene Expression, 1, 355-385.
46. Razin, S.V., Yarovaia, O.V. & Georgier, G.P. (1985), Low ionic strength extraction of nuclease-treated nuclei destroys the attachment of transcriptionally active DNA to the nuclear skeleton. Nucleic Acids Res., 13, 7427-7444.
47. Razin, S.V., Kekelidze, M.G., Lukanidin, E.M., Scherrer, K. & Georgiev, G.P. (1986), Replication origins are attached to the nuclear skeleton. Nucleic Acids Res., 14, 8189-8207.
48. Razin, S.V. (1987), DNA interactions with the nuclear matrix and spatial organization of replication and transcription. BioEssays, 6, 19-23.
49. Razin, S.V., Hancock, R., Iarovaia, O., Westgaard, O., Gromova, I. & Georgiev, G.P. (1993), Structural-functional organization of chromosomal DNA domains. Cold Spring Harbor Symp. Quant. Biol., 58, 25-35.
50. Razin, S.V., Gromova, I.I. & Iarovaia, O.V. (1995), Specificity and functional significance of DNA interaction with the nuclear matrix: new approaches to clarify the old questions. Int. Rev. Cytol., 162B, 405-448.
51. Roizman, B. & Sears, A.M. (1990), Herpes simplex viruses and their replication, in "Fields virology", 2nd ed. (pp. 1795-1840). Raven Press, New York.
52. Schulze-Osthoff, K., Walczak, H., Dröge, W. & Krammer, P.H. (1994), Cell nucleus and DNA fragmentation are not required for apoptosis. J. Cell Biol., 127, 15-20.
53. Swedlow, J.R., Agard, D.A. & Sedat, J.W. (1993), Chromosome structure inside the nucleus. Curr. Opin. Cell Biol., 5, 412-416.
54. Thome, M., Schneider, P., Hofmann, K., Fickenscher, H., Meinl, E., Neipel, F., Mattmann, C., Burns, K., Bodmer, J.-L., Schröter, M., Scaffidi, C., Krammer, P.H., Peter, M.E. & Tschopp, J. (1997), Viral FLICE-inhibitory proteins (FLIPS) prevent apoptosis induced by death receptors. Nature, 386, 517-521.
55. Van der Velden, H.M.V., van Willigen, G., Wetzeis, R.H.W. & Wanka, F. (1984), Attachment of origins of replication to the nuclear matrix and chromosomal scaffold. FEBS Lett., 171, 13-16.
56. Wagner, E.K. (1994), Herpes simplex virus molecular biology, in "Encyclopedia of virology", vol. 2 (Webster, R.G. & Granoff, A., eds.) (pp. 593-603). Academic Press, London.
57. Zehnbauer, B.A. & Vogelstein, B. (1985), Supercoiled loops and the organization of replication and transcription in eukaryotes. Bioessays, 2, 52-54.