Archaea and the new age of microorganisms

Trends in Ecology and Evolution

Volumn 13, Issue 5, 1998, Pages 190-194

  Aravalli, Rajagopal N ^a   She, Qunxin ^a   Garrett, Roger A ^a  

^a UNIVERSITY OF COPENHAGEN   (Denmark)

Author keywords

[No Author keywords available]

Indexed keywords

ARCHAEA; MICROORGANISM;

ARCHAEBACTERIUM; ECOLOGY; ENVIRONMENT; MARINE ENVIRONMENT; NONHUMAN; PH; PLANKTON; REVIEW; SEDIMENT; TEMPERATURE;

ARCHAEA;

EID: 0032080706     PISSN: 01695347     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0169-5347(98)01343-3     Document Type: Article

References (42)

1. 1 Woese, C.R. and Fox, G.E. (1977) Phylogenetic structure of the prokaryotic domain: the primary kingdoms, Proc. Natl. Acad. Sci. U. S. A. 74, 5088-5090
2. 2 Kates, M., Kushner, D.J. and Matheson, A.T., eds (1993) The Biochemistry of Archaea (Archaebacteria), Elsevier
3. 3 Edgell, D.R. and Doolittle W.F. (1997) Archaea and the origin(s) of DNA replication proteins, Cell 89, 995-998
4. 4 Koonin, E.V. et al. (1997) Comparison of archaeal and bacterial genomes: computer analysis of protein sequences predicts novel functions and suggests a chimeric origin for the archaea, Mol. Microbiol. 25, 619-637
5. 5 Kandler, O. and König, H (1985) Cell envelopes of archaebacteria, in The Bacteria, Vol. 8, Archaebacteria (Woese, C.R. and Wolfe, R.S., eds), pp. 413-457, Academic Press
6. 6 Stetter, K.O. (1995) Microbial life in hyperthermal environments, Am. Soc. Microbiol. News 61, 285-290
7. 7 Prieur, D. (1997) Microbiology of deep-sea hydrothermal vents, Trends Biotechnol. 15, 242-244
8. 8 Jeanthon, C. and Prieur, D. (1990) Susceptibility to heavy metals and characterization of heterotrophic bacteria isolated from two hydrothermal vent polychaete annelids, Alvinella pompejana and Alvinella caudata, Appl. Environ. Microbiol. 56, 3308-3314
9. 9 Kushner, D.J. (1985) The Halobacteriaceae, in The Bacteria, Vol. 8, Archaebacteria (Woese, C.R. and Wolfe, R.S., eds), pp. 171-214, Academic Press
10. 10 Oliver, B. et al. (1994) Anaerobic bacteria from hypersaline environments, Microbiol. Rev. 58, 27-38
11. 11 Amann, R.I., Ludwig, W. and Schleifer, K-H. (1995) Phylogenetic identification and in situ detection of individual microbial cells without cultivation, Microbiol. Rev. 59, 143-169
12. 12 Pace, N.R. et al. (1986) The analysis of natural microbial populations by rRNA sequences, Adv. Microb. Ecol. 9, 1-55
13. 13 Giovannoni, S.J. et al. (1988) Phylogenetic group-specific oligonucleotide probes for identification of single microbial cells, J. Bacteriol. 170, 720-726
14. 14 DeLong, E.F., Wickham, G.S. and Pace, N.R. (1989) Phylogenetic stains: rRNA-based probes for the identification of single cells, Science 243, 1360-1363
15. 15 Muyzer, G., De Waal, E.C. and Uitterlinden, A.G. (1993) Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA, Appl. Environ. Microbiol. 59, 695-700
16. 16 Preston, C.M. et al. (1996) A psychrophilic crenarchaeon inhabits a marine sponge: Cenarchaeum symbiosum gen. nov., sp. nov., Proc. Natl. Acad. Sci. U. S. A. 93, 6241-6246
17. 17 Huber, R. et al. (1995) Isolation of a hyperthermophilic archaeum predicted by in situ RNA analysis, Nature 376, 57-58
18. 18 Kudo, Y. et al. (1997) Peculiar archaea found in Japanese paddy soils, Biosci. Biotechnol. Biochem 61, 917-920
19. 19 Bintrim, S.B. et al. (1997) Molecular phylogeny of archaea from soil, Proc. Natl. Acad. Sci. U. S. A. 94, 277-282
20. 20 Jurgens, G., Lindstrom, K. and Saano, A. (1997) Novel group within the kingdom Crenarchaeota from boreal forest soil, Appl. Environ. Microbiol. 63, 803-805
21. 21 Schleper, C., Holben, W. and Klenk, H-P. (1997) Recovery of crenarchaeotal ribosomal DNA sequences from freshwater-lake sediments, Appl. Environ. Microbiol. 63, 321-323
22. 22 MacGregor, B.J. et al. (1997) Crenarchaeota in Lake Michigan sediment, Appl. Environ. Microbiol. 63, 1178-1181
23. 23 Fry, N.K. et al. (1997) Population structure of microbial communities associated with two deep, anaerobic, alkaline aquifers, Appl. Environ. Microbiol. 63, 1498-1504
24. 24 Delong, E.F. (1992) Archaea in coastal marine environments, Proc. Natl. Acad. Sci. U. S. A. 89, 5685-5689
25. 25 Fuhrman, J.A., McCallum, K. and Davis, A.A. (1992) Novel major archaebacterial group from marine plankton, Nature 356, 148-149
26. 26 Fuhrman, J.A., McCallum, K. and Davis, A.A. (1993) Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific oceans, Appl. Environ. Microbiol. 59, 1294-1302
27. 27 Fuhrman, J.A. and Davis, A.A. (1997) Widespread archaea and novel bacteria from the deep sea as shown by 16S rRNA gene sequences, Mar. Ecol. Prog. Ser. 150, 275-285
28. 28 Delong, E.F. et al. (1994) High abundance of archaea in antarctic marine picoplankton, Nature 371, 695-697
29. 29 Benlloch, S. et al. (1996) Description of prokaryotic biodiversity along the salinity gradient of a multipond solar saltern by direct PCR amplification of 16S rDNA, Hydrobiologia, 329, 19-31
30. 30 Barns, S.M. et al. (1996) Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences, Proc. Natl. Acad. Sci. U. S. A. 93, 9188-9193
31. 31 Klenk, H-P. et al. (1997) The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus, Nature 390, 364-370
32. 32 Bult, C.J. et al. (1996) Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii, Science 273, 1058-1073
33. 33 Smith, D.R. et al. (1997) Complete genome sequence of Methanobacterium thermoautotrophicum ΔH: functional analysis and comparative genomics, J. Bacteriol. 179, 7135-7155
34. 34 Ward, N. et al. (1995) Identifying and culturing the 'unculturables': a challenge for microbiologists, in Microbial Diversity and Ecosystem Function (Allsopp, D., Colwell, R.R. and Hawksworth, D.L., eds), pp. 89-110, CAB International
35. 35 Hackstein, J.H.P. and Vogels, G.D. (1997) Endosymbiotic interactions in anaerobic protozoa, Antonie van Leeuwenhoek Int. J. Gen. Mol. Microbiol. 71, 151-158
36. 36 Sowers, K.R. (1996) Methanogenic archaea: an overview, in Archaea: a laboratory manual (Robb, F.T. et al., eds), pp. 3-13, Cold Spring Harbor Laboratory Press
37. 37 Zillig, W. et al. (1996) Viruses, plasmids and other genetic elements of thermophilic and hyperthermophilic archaea, FEMS Microbiol. Rev. 18, 225-236
38. - cells of Sulfolobus acidocaldarius, Proc. Natl. Acad. Sci. U. S. A. 92, 12285-12289
39. + antiporter by halocin H6, J. Biol. Chem. 270, 6450-6455
40. 40 Maidak, B.L. et al. (1997) The ribosomal database project, Nucleic Acids Res. 25, 109-111
41. 41 Ueda, T., Suga, Y. and Matsuguchi, T. (1995) Molecular phylogenetic analysis of a soil microbial community in a soybean field, Eur. J. Soil Sci. 46, 415-421
42. 42 Herschberger, K.L. et al. (1996) Wide diversity of crenarchaeota, Nature 384, 420