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Volumn 329, Issue 1-3, 1996, Pages 19-31

Description of prokaryotic biodiversity along the salinity gradient of a multipond solar saltern by direct PCR amplification of 16S rDNA

Author keywords

16S rRNA; Biodiversity; halophilic Archaea; halophilic Bacteria; hypersaline environments

Indexed keywords

ALPHAPROTEOBACTERIA; ARCHAEA; BACTERIA (MICROORGANISMS); HALOARCULA; PROKARYOTA; RHODOBIUM MARINUM; RHODOPSEUDOMONAS;

EID: 0029862582     PISSN: 00188158     EISSN: None     Source Type: Journal    
DOI: 10.1007/BF00034544     Document Type: Article
Times cited : (51)

References (46)
  • 1
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • Amann, R. I., W. Ludwig & K-H. Schleifer, 1995. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59: 143-169.
    • (1995) Microbiol. Rev. , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.-H.3
  • 2
    • 0027995162 scopus 로고
    • A molecular technique for identification of bacteria using small subunit ribosomal RNA sequences
    • Avaniss-Aghajani, E., K. Jones, D. Chapman & C. Brunk, 1994. A molecular technique for identification of bacteria using small subunit ribosomal RNA sequences. BioTechniques, 17: 144-149.
    • (1994) BioTechniques , vol.17 , pp. 144-149
    • Avaniss-Aghajani, E.1    Jones, K.2    Chapman, D.3    Brunk, C.4
  • 3
    • 27044435667 scopus 로고
    • Characterization of model evaporitic environments through the study of lipid components
    • Barbe, A., J. O. Grimait, J. J. Pueyo & J. Albaiges, 1990. Characterization of model evaporitic environments through the study of lipid components. Org. Geochem. 8: 293-297.
    • (1990) Org. Geochem. , vol.8 , pp. 293-297
    • Barbe, A.1    Grimait, J.O.2    Pueyo, J.J.3    Albaiges, J.4
  • 4
    • 0028343555 scopus 로고
    • Remarkable archaeal diversity detected in a Yellowstone National Park hot spring environment
    • Barns, S. M., R. E. Fundyga, M. W. Jeffries & N. R. Pace. 1994. Remarkable archaeal diversity detected in a Yellowstone National Park hot spring environment. Proc. Natl. Acad. Sci. USA. 91: 1609-1613.
    • (1994) Proc. Natl. Acad. Sci. USA. , vol.91 , pp. 1609-1613
    • Barns, S.M.1    Fundyga, R.E.2    Jeffries, M.W.3    Pace, N.R.4
  • 5
    • 49149135789 scopus 로고
    • Dideoxynucleotide phosphoramidites - A new class of key intermediates for deoxypolynucleotide synthesis
    • Beaucage, S. L. & M. H. Caruthers, 1981. Dideoxynucleotide phosphoramidites - a new class of key intermediates for deoxypolynucleotide synthesis. Tetrahedrom Lett. 22: 1859-1862.
    • (1981) Tetrahedrom Lett. , vol.22 , pp. 1859-1862
    • Beaucage, S.L.1    Caruthers, M.H.2
  • 6
    • 27044441078 scopus 로고    scopus 로고
    • Bacterial and archaeal diversity as shown by partial sequencing of 16S rRNA genes directly amplified from a hypersaline environment System
    • in press
    • Benlloch, S., A. J. Martínez-Murcia & F. Rodríguez-Valera, 1996. Bacterial and archaeal diversity as shown by partial sequencing of 16S rRNA genes directly amplified from a hypersaline environment System. Applied Microbiol. (in press).
    • (1996) Applied Microbiol.
    • Benlloch, S.1    Martínez-Murcia, A.J.2    Rodríguez-Valera, F.3
  • 7
    • 0019513663 scopus 로고
    • Gene organization and primary structure of a ribosomal RNA operon from E. coli
    • Brosius, J. P., T. J. Dull, D. D. Sleeter & H. F. Noyer, 1981. Gene organization and primary structure of a ribosomal RNA operon from E. coli. J. Mol. Biol. 148: 107-127.
    • (1981) J. Mol. Biol. , vol.148 , pp. 107-127
    • Brosius, J.P.1    Dull, T.J.2    Sleeter, D.D.3    Noyer, H.F.4
  • 8
    • 0028594902 scopus 로고
    • High abundance of Archaea in Antarctic marine picoplankton
    • DeLong, E. F., K. Y. Wu, B. B. Prézelin & R. V. M. Jovine; 1994. High abundance of Archaea in Antarctic marine picoplankton. Nature 371: 695-697.
    • (1994) Nature , vol.371 , pp. 695-697
    • DeLong, E.F.1    Wu, K.Y.2    Prézelin, B.B.3    Jovine, R.V.M.4
  • 9
    • 0026755238 scopus 로고
    • Archaea in coastal marine environments
    • DeLong, E. F., 1992. Archaea in coastal marine environments. Proc. Natl. Acad. Sci. USA. 89: 5685-5689.
    • (1992) Proc. Natl. Acad. Sci. USA. , vol.89 , pp. 5685-5689
    • DeLong, E.F.1
  • 10
    • 0026525546 scopus 로고
    • Novel major archaebacterial group from marine plankton
    • Fuhrman, J. A., K. McCallum & A. A. Davis, 1992. Novel major archaebacterial group from marine plankton. Nature 356: 148-149.
    • (1992) Nature , vol.356 , pp. 148-149
    • Fuhrman, J.A.1    McCallum, K.2    Davis, A.A.3
  • 11
    • 0027336561 scopus 로고
    • Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific Oceans
    • Fuhrman, J. A., K. McCallum & A. A. Davis, 1993. Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific Oceans. Appl. Envir. Microbiol. 59: 1294-1302.
    • (1993) Appl. Envir. Microbiol. , vol.59 , pp. 1294-1302
    • Fuhrman, J.A.1    McCallum, K.2    Davis, A.A.3
  • 13
    • 0025322547 scopus 로고
    • Tangential flow filtration and preliminary phylogenetic analysis of marine picoplankton
    • Giovannoni, S. J., E. F. DeLong, T. M. Schmidt & N. R. Pace, 1990b. Tangential flow filtration and preliminary phylogenetic analysis of marine picoplankton. Appl. Envir. Microbiol. 56: 2572-2575.
    • (1990) Appl. Envir. Microbiol. , vol.56 , pp. 2572-2575
    • Giovannoni, S.J.1    DeLong, E.F.2    Schmidt, T.M.3    Pace, N.R.4
  • 14
    • 0022573099 scopus 로고
    • The ecology and taxonomy of halobacteria
    • Grant, W. D. & H. N. M. Ross, 1986. The ecology and taxonomy of halobacteria. FEMS Microbiol. Rev. 39: 9-15.
    • (1986) FEMS Microbiol. Rev. , vol.39 , pp. 9-15
    • Grant, W.D.1    Ross, H.N.M.2
  • 15
    • 0026616321 scopus 로고
    • Bacterioplankton community structure and dynamics after large-scale release of nonindigenous bacteria as revealed by low-molecular-weight-RNA analysis
    • Höfle, M. G., 1992. Bacterioplankton community structure and dynamics after large-scale release of nonindigenous bacteria as revealed by low-molecular-weight-RNA analysis. Appl. Envir. Microbiol. 58: 3387-3394.
    • (1992) Appl. Envir. Microbiol. , vol.58 , pp. 3387-3394
    • Höfle, M.G.1
  • 16
    • 0021028050 scopus 로고
    • Planktonic standing crop and nutrients in a saltern ecosystem
    • Javor, B. J., 1983a. Planktonic standing crop and nutrients in a saltern ecosystem. Limnol. Oceanogr. 28: 153-159.
    • (1983) Limnol. Oceanogr. , vol.28 , pp. 153-159
    • Javor, B.J.1
  • 17
    • 0001424517 scopus 로고
    • Nutrients and ecology of the Western Salt and Exportadora de Sal saltern brines
    • Salt Institute
    • Javor, B. J., 1983b. Nutrients and ecology of the Western Salt and Exportadora de Sal saltern brines. 6th International Symposium on Salt. Vol. 1, Salt Institute.
    • (1983) 6th International Symposium on Salt , vol.1
    • Javor, B.J.1
  • 18
    • 0027227725 scopus 로고
    • Partial sequence of the gene for a serine protease from a halophilic archaeum Haloferax mediterranei R4, and nucleotide sequences of 16S rRNA encoding genes from several halophilic archaea
    • Kamekura, M. & Y. Seno, 1993. Partial sequence of the gene for a serine protease from a halophilic archaeum Haloferax mediterranei R4, and nucleotide sequences of 16S rRNA encoding genes from several halophilic archaea. Experientia 49: 503-513.
    • (1993) Experientia , vol.49 , pp. 503-513
    • Kamekura, M.1    Seno, Y.2
  • 19
    • 0001300343 scopus 로고
    • Physiology of halophilic eubacteria
    • Rodríguez-Valera, F. (ed.), CRC Press, Inc. Boca Raton, Florida
    • Kushner, D. J. & M. Kamekura, 1988. Physiology of halophilic eubacteria. In: Rodríguez-Valera, F. (ed.), Halophilic Bacteria, Volume I. CRC Press, Inc. Boca Raton, Florida: 109-138.
    • (1988) Halophilic Bacteria , vol.1 , pp. 109-138
    • Kushner, D.J.1    Kamekura, M.2
  • 21
    • 0013566788 scopus 로고
    • AL
    • J. T. Staley, M. P. Bryant, N. Pfennig & J. G. Holt (eds), The Williams & Wilkins Co., Baltimore
    • AL, p. 2219. In J. T. Staley, M. P. Bryant, N. Pfennig & J. G. Holt (eds), Bergey's Manual of Systematic Bacteriology, Vol. 3. The Williams & Wilkins Co., Baltimore.
    • (1989) Bergey's Manual of Systematic Bacteriology , vol.3 , pp. 2219
    • Larsen, H.1    Grant, W.D.2
  • 22
    • 0026764237 scopus 로고
    • Occurrence of novel groups of the Domain Bacteria as revealed by analysis of genetic material isolated from an Australian Terrestrial Environment
    • Liesack, W. & E. Stackebrandt, 1992. Occurrence of novel groups of the Domain Bacteria as revealed by analysis of genetic material isolated from an Australian Terrestrial Environment. J. Bacteriol. 174: 5072-5078.
    • (1992) J. Bacteriol. , vol.174 , pp. 5072-5078
    • Liesack, W.1    Stackebrandt, E.2
  • 25
    • 0025982062 scopus 로고
    • Construction of T-vectors, a rapid and general system for direct cloning of unmodified PCR products
    • Marchuk, D., M. Drumm, A. Saulino & F. S. Collins, 1990. Construction of T-vectors, a rapid and general system for direct cloning of unmodified PCR products. Nucl. Acids. Res. 19: 1154.
    • (1990) Nucl. Acids. Res. , vol.19 , pp. 1154
    • Marchuk, D.1    Drumm, M.2    Saulino, A.3    Collins, F.S.4
  • 26
    • 0026629643 scopus 로고
    • Phylogenetic interrelationships of members of the genera Aeromonas and Plesiomonas as determined by 16S rDNA sequencing: Lack of congruence with results of DNA-DNA hybridization
    • Martínez-Murcia, A. J., S. Benlloch & M. D. Collins, 1992. Phylogenetic interrelationships of members of the genera Aeromonas and Plesiomonas as determined by 16S rDNA sequencing: lack of congruence with results of DNA-DNA hybridization. Int. J. Syst. Bact. 42: 412-421.
    • (1992) Int. J. Syst. Bact. , vol.42 , pp. 412-421
    • Martínez-Murcia, A.J.1    Benlloch, S.2    Collins, M.D.3
  • 27
    • 27044438877 scopus 로고
    • Doctoral Thesis. Department of Microbiology, University of Reading, Reading, U.K.
    • Martínez-Murcia, A. J., 1993. Doctoral Thesis. Department of Microbiology, University of Reading, Reading, U.K.
    • (1993)
    • Martínez-Murcia, A.J.1
  • 28
    • 0028252969 scopus 로고
    • The use of arbitrarily primed PCR (APPCR) to develop taxa specific DNA probes of known sequence
    • Martínez-Murcia, A. J. & F. Rodríguez-Valera, 1994. The use of arbitrarily primed PCR (APPCR) to develop taxa specific DNA probes of known sequence. FEMS Microbiol. Lett. 124: 265-270.
    • (1994) FEMS Microbiol. Lett. , vol.124 , pp. 265-270
    • Martínez-Murcia, A.J.1    Rodríguez-Valera, F.2
  • 29
    • 0028981814 scopus 로고    scopus 로고
    • Evaluation of prokaryotic diversity by restrictase digestion of 16S rDNA directly amplified from hypersaline environments
    • in press
    • Martínez-Murcia, A. J., S. G. Acinas & F. Rodríguez-Valera, 1996. Evaluation of prokaryotic diversity by restrictase digestion of 16S rDNA directly amplified from hypersaline environments. FEMS Microbiol. Ecol. (in press).
    • (1996) FEMS Microbiol. Ecol.
    • Martínez-Murcia, A.J.1    Acinas, S.G.2    Rodríguez-Valera, F.3
  • 31
    • 0028184602 scopus 로고
    • Estimation of diversity and community structure through restriction fragment length polymorphism distribution analysis of bacterial 16S rRNA genes from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii
    • Moyer, C. L., F. C. Dobbs & D. M. Karl, 1994. Estimation of diversity and community structure through restriction fragment length polymorphism distribution analysis of bacterial 16S rRNA genes from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii. Appl. Envir. Microbiol. 60: 871-879.
    • (1994) Appl. Envir. Microbiol. , vol.60 , pp. 871-879
    • Moyer, C.L.1    Dobbs, F.C.2    Karl, D.M.3
  • 32
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of Polymerase Chain Reaction-Amplified genes coding for 16S rRNA
    • Muyzer, G., E. C. De Waal & A. G. Uitterlinden, 1993. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of Polymerase Chain Reaction-Amplified genes coding for 16S rRNA. Appl. Envir. Microbiol. 59: 695-700.
    • (1993) Appl. Envir. Microbiol. , vol.59 , pp. 695-700
    • Muyzer, G.1    De Waal, E.C.2    Uitterlinden, A.G.3
  • 33
    • 0025198333 scopus 로고
    • Estimation of the contribution of halobacteria to the bacterial biomass and activity in solar salterns by the use of bile salts
    • Oren, A., 1990. Estimation of the contribution of halobacteria to the bacterial biomass and activity in solar salterns by the use of bile salts. FEMS Microbiol. Ecol. 73: 41-48.
    • (1990) FEMS Microbiol. Ecol. , vol.73 , pp. 41-48
    • Oren, A.1
  • 34
    • 0002842298 scopus 로고
    • The analysis of natural microbial populations by ribosomal RNA sequences
    • Pace, N. R., D. A. Stahl, D. J. Lane & G. J. Olsen, 1986. The analysis of natural microbial populations by ribosomal RNA sequences. Adv. Microb. Ecol. 9: 1-55.
    • (1986) Adv. Microb. Ecol. , vol.9 , pp. 1-55
    • Pace, N.R.1    Stahl, D.A.2    Lane, D.J.3    Olsen, G.J.4
  • 35
    • 0027457076 scopus 로고
    • Leptospira species categorized by arbitrarily primed polymerase chain reaction (PCR) and by mapped restriction polymorphisms in PCR-amplified rRNA genes
    • Ralph, D., M. McClelland, J. Welsh, G. Baranton & P. Perolat, 1993. Leptospira species categorized by arbitrarily primed polymerase chain reaction (PCR) and by mapped restriction polymorphisms in PCR-amplified rRNA genes. J. Bacteriol. 175: 973-981.
    • (1993) J. Bacteriol. , vol.175 , pp. 973-981
    • Ralph, D.1    McClelland, M.2    Welsh, J.3    Baranton, G.4    Perolat, P.5
  • 36
    • 0028308089 scopus 로고
    • Phylogenetic analysis of the hyperthermophilic pink filament community in Octopus Spring, Yellowstone National Park
    • Reysenbach, A-L., G. S. Wickham & N. R. Pace, 1994. Phylogenetic analysis of the hyperthermophilic pink filament community in Octopus Spring, Yellowstone National Park. Appl. Envir. Microbiol. 60: 2113-2119.
    • (1994) Appl. Envir. Microbiol. , vol.60 , pp. 2113-2119
    • Reysenbach, A.-L.1    Wickham, G.S.2    Pace, N.R.3
  • 37
    • 0019747587 scopus 로고
    • Characteristics of the heterotrophic bacterial populations in hypersaline environments of different salt concentrations
    • Rodríguez-Valera, F., F. Ruiz-Berraquero & A. Ramos-Cormenzana, 1981. Characteristics of the heterotrophic bacterial populations in hypersaline environments of different salt concentrations. Microb. Ecol. 7: 235-243.
    • (1981) Microb. Ecol. , vol.7 , pp. 235-243
    • Rodríguez-Valera, F.1    Ruiz-Berraquero, F.2    Ramos-Cormenzana, A.3
  • 38
    • 0022617055 scopus 로고
    • The ecology and taxonomy of aerobic chemoorganotrophic halophilic eubacteria
    • Rodríguez-Valera, F., 1986. The ecology and taxonomy of aerobic chemoorganotrophic halophilic eubacteria. FEMS Microbiol. Rev. 39: 17-22.
    • (1986) FEMS Microbiol. Rev. , vol.39 , pp. 17-22
    • Rodríguez-Valera, F.1
  • 39
    • 0001265751 scopus 로고
    • Variation of environmental features and microbial populations with salt concentrations in a multi-pond saltern
    • Rodríguez-Valera, F., A. Ventosa, G. Juez & J. F. Imhoff, 1985. Variation of environmental features and microbial populations with salt concentrations in a multi-pond saltern. Microb. Ecol. 11: 107-115.
    • (1985) Microb. Ecol. , vol.11 , pp. 107-115
    • Rodríguez-Valera, F.1    Ventosa, A.2    Juez, G.3    Imhoff, J.F.4
  • 41
    • 0025860931 scopus 로고
    • Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing
    • Schmidt, T. M., E. F. DeLong & N. R. Pace, 1991. Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing. J. Bacteriol. 173: 4371-4378.
    • (1991) J. Bacteriol. , vol.173 , pp. 4371-4378
    • Schmidt, T.M.1    DeLong, E.F.2    Pace, N.R.3
  • 42
    • 0027441283 scopus 로고
    • Bacterial diversity in a soil sample from a subtropical Australian environment as determined by 16S rDNA analysis
    • Stackebrandt, E., W. Liesack & B. M. Goebel, 1993. Bacterial diversity in a soil sample from a subtropical Australian environment as determined by 16S rDNA analysis. The FASEB J. 7: 232-236.
    • (1993) The FASEB J. , vol.7 , pp. 232-236
    • Stackebrandt, E.1    Liesack, W.2    Goebel, B.M.3
  • 43
    • 0025256110 scopus 로고
    • Comparison of phenotypic diversity and DNA heterogeneity in a population of soil bacteria
    • Torsvik, V, S. Käre, R. Sørheim & J. Goksøyr, 1990. Comparison of phenotypic diversity and DNA heterogeneity in a population of soil bacteria. Appl. Envir. Microbiol. 56: 776-781.
    • (1990) Appl. Envir. Microbiol. , vol.56 , pp. 776-781
    • Torsvik, V.1    Käre, S.2    Sørheim, R.3    Goksøyr, J.4
  • 44
    • 0018873836 scopus 로고
    • A square bacterium
    • Walsby, A. E., 1980. A square bacterium. Nature 283: 69.
    • (1980) Nature , vol.283 , pp. 69
    • Walsby, A.E.1
  • 45
    • 0025366456 scopus 로고
    • 16S rRNA sequences reveal numerous uncultured microorganisms in a natural community
    • Ward, D. M., R. Weller & M. M. Bateson, 1990. 16S rRNA sequences reveal numerous uncultured microorganisms in a natural community. Nature 345: 63-65.
    • (1990) Nature , vol.345 , pp. 63-65
    • Ward, D.M.1    Weller, R.2    Bateson, M.M.3
  • 46
    • 0025731189 scopus 로고
    • 16S rRNA sequences of uncultivated hot spring cyanobacterial mat inhabitants retrieved as randomly primed cDNA
    • Weller, R., J. W. Weller & D. M. Ward, 1991. 16S rRNA sequences of uncultivated hot spring cyanobacterial mat inhabitants retrieved as randomly primed cDNA. Appl. Envir. Microbiol. 57: 1146-1151.
    • (1991) Appl. Envir. Microbiol. , vol.57 , pp. 1146-1151
    • Weller, R.1    Weller, J.W.2    Ward, D.M.3


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