-
1
-
-
0030575840
-
Classification of nucleic acid junctions
-
Altona, C. (1996). Classification of nucleic acid junctions. J. Mol. Biol. 263, 568-581.
-
(1996)
J. Mol. Biol.
, vol.263
, pp. 568-581
-
-
Altona, C.1
-
2
-
-
0028999728
-
Effects of Holliday junction position on Xer-mediated recombination in vitro
-
Arciszewska, L.K., Grainge, I., and Sherratt, D.J. (1995). Effects of Holliday junction position on Xer-mediated recombination in vitro. EMBO J. 14, 2651-2660.
-
(1995)
EMBO J.
, vol.14
, pp. 2651-2660
-
-
Arciszewska, L.K.1
Grainge, I.2
Sherratt, D.J.3
-
3
-
-
0030927777
-
Action of site-specific recombinases XerC and XerD on tethered Holliday junctions
-
Arciszewska, L.K., Grainge, I., and Sherratt, D.J. (1997). Action of site-specific recombinases XerC and XerD on tethered Holliday junctions. EMBO J. 16, 3731-3743.
-
(1997)
EMBO J.
, vol.16
, pp. 3731-3743
-
-
Arciszewska, L.K.1
Grainge, I.2
Sherratt, D.J.3
-
4
-
-
0030950350
-
The isomeric preference of Holliday junctions influences resolution bias by λ integrase
-
Azaro, M.A., and Landy, A. (1997). The isomeric preference of Holliday junctions influences resolution bias by λ integrase. EMBO J. 16, 3744-3755.
-
(1997)
EMBO J.
, vol.16
, pp. 3744-3755
-
-
Azaro, M.A.1
Landy, A.2
-
5
-
-
0029087265
-
Structural analysis of the RuvC-Holliday junction complex reveals an unfolded junction
-
Bennett, R.J., and West, S.C. (1995). Structural analysis of the RuvC-Holliday junction complex reveals an unfolded junction. J. Mol. Biol. 252, 213-226.
-
(1995)
J. Mol. Biol.
, vol.252
, pp. 213-226
-
-
Bennett, R.J.1
West, S.C.2
-
6
-
-
0023710532
-
Construction and analysis of monomobile DNA junctions
-
Chen, J.-H., Churchill, M.E.A., Tullius, T.D., Kallenbach, N.R., and Seeman, N.C. (1988). Construction and analysis of monomobile DNA junctions. Biochemistry 27, 6032-6038.
-
(1988)
Biochemistry
, vol.27
, pp. 6032-6038
-
-
Chen, J.-H.1
Churchill, M.E.A.2
Tullius, T.D.3
Kallenbach, N.R.4
Seeman, N.C.5
-
7
-
-
0026651559
-
DNA cleavage in trans by the active site tyrosine during Flp recombination: Switching protein partners before exchanging strands
-
Chen, J.W., Lee, J., and Jayaram, M. (1992a). DNA cleavage in trans by the active site tyrosine during Flp recombination: switching protein partners before exchanging strands. Cell 69, 647-658.
-
(1992)
Cell
, vol.69
, pp. 647-658
-
-
Chen, J.W.1
Lee, J.2
Jayaram, M.3
-
8
-
-
0026640378
-
Bending incompetent variants of Flp recombinase mediate strand transfer in half-site recombinations: Role of DNA bending in recombination
-
Chen, J.W., Evans, B.R., Rosenfeldt, H., and Jayaram, M. (1992b). Bending incompetent variants of Flp recombinase mediate strand transfer in half-site recombinations: role of DNA bending in recombination. Gene 119, 37-48.
-
(1992)
Gene
, vol.119
, pp. 37-48
-
-
Chen, J.W.1
Evans, B.R.2
Rosenfeldt, H.3
Jayaram, M.4
-
9
-
-
0026639433
-
Fluorescence resonance energy transfer analysis of the structure of the four-way junction
-
Clegg, R.M., Murchie, A.I.H., Zechel, A., Carlberg, C., Diekmann, S., and Lilley, D.M.J. (1992). Fluorescence resonance energy transfer analysis of the structure of the four-way junction. Biochemistry 31, 4846-4856.
-
(1992)
Biochemistry
, vol.31
, pp. 4846-4856
-
-
Clegg, R.M.1
Murchie, A.I.H.2
Zechel, A.3
Carlberg, C.4
Diekmann, S.5
Lilley, D.M.J.6
-
10
-
-
0023551842
-
Gel electrophoretic analysis of the geometry of a DNA four-way junction
-
Cooper, J.P., and Hagerman, P.J. (1987). Gel electrophoretic analysis of the geometry of a DNA four-way junction. J. Mol. Biol. 198, 711-719.
-
(1987)
J. Mol. Biol.
, vol.198
, pp. 711-719
-
-
Cooper, J.P.1
Hagerman, P.J.2
-
11
-
-
0000231785
-
Geometry of a branched DNA junction in solution
-
Cooper, J.P., and Hagerman, P.J. (1989). Geometry of a branched DNA junction in solution. Proc. Natl. Acad. Sci. USA 86, 7336-7340.
-
(1989)
Proc. Natl. Acad. Sci. USA
, vol.86
, pp. 7336-7340
-
-
Cooper, J.P.1
Hagerman, P.J.2
-
12
-
-
0024236673
-
The mechanism of conservative site-specific recombination
-
Craig, N.L. (1988). The mechanism of conservative site-specific recombination. Annu. Rev. Genet. 22, 77-105.
-
(1988)
Annu. Rev. Genet.
, vol.22
, pp. 77-105
-
-
Craig, N.L.1
-
13
-
-
0027145151
-
χ structures by Flp site-specific recombinase
-
χ structures by Flp site-specific recombinase. J. Mol. Biol. 234, 522-533.
-
(1993)
J. Mol. Biol.
, vol.234
, pp. 522-533
-
-
Dixon, J.E.1
Sadowski, P.D.2
-
14
-
-
0028096839
-
χ structures by the FLP recombinase of 2 micron plasmid
-
χ structures by the FLP recombinase of 2 micron plasmid. J. Mol. Biol. 243, 199-207.
-
(1994)
J. Mol. Biol.
, vol.243
, pp. 199-207
-
-
Dixon, J.E.1
Sadowski, P.D.2
-
15
-
-
0029589247
-
The Flp recombinase cleaves Holliday junctions in trans
-
Dixon, J.E., Shaikh, A.C., and Sadowski, P.D. (1995).The Flp recombinase cleaves Holliday junctions in trans. Mol. Microbiol. 18, 449-458.
-
(1995)
Mol. Microbiol.
, vol.18
, pp. 449-458
-
-
Dixon, J.E.1
Shaikh, A.C.2
Sadowski, P.D.3
-
16
-
-
0024280885
-
The structure of the Holliday junction and its resolution
-
Duckett, D.R., Murchie, A.I.H., Diekmann, S., von Kitzing, E., Kemper, B., and Lilley, D.M.J. (1988). The structure of the Holliday junction and its resolution. Cell 55, 79-89.
-
(1988)
Cell
, vol.55
, pp. 79-89
-
-
Duckett, D.R.1
Murchie, A.I.H.2
Diekmann, S.3
Von Kitzing, E.4
Kemper, B.5
Lilley, D.M.J.6
-
17
-
-
0029654330
-
Structure of the four-way DNA junction and its interaction with proteins
-
Duckett, D.R., Murchie, A.I.H., Giraud-Panis, M-J.E., Pohler, J.R., and Lilley, D.M.J. (1995a). Structure of the four-way DNA junction and its interaction with proteins. Phil. Trans. R. Soc. (Lond.) B 347, 27-36.
-
(1995)
Phil. Trans. R. Soc. (Lond.) B
, vol.347
, pp. 27-36
-
-
Duckett, D.R.1
Murchie, A.I.H.2
Giraud-Panis, M.-J.E.3
Pohler, J.R.4
Lilley, D.M.J.5
-
18
-
-
0029562737
-
The global folding of four-way helical junctions in RNA, including that in U1 snRNA
-
Duckett, D.R., Murchie, A.I.H., and Lilley, D.M.J. (1995b). The global folding of four-way helical junctions in RNA, including that in U1 snRNA. Cell 83, 1027-1036.
-
(1995)
Cell
, vol.83
, pp. 1027-1036
-
-
Duckett, D.R.1
Murchie, A.I.H.2
Lilley, D.M.J.3
-
19
-
-
0027751968
-
Conformational distributions of a four-way DNA junction revealed by time resolved fluorescence resonance energy transfer
-
Eis, P.S., and Millar, D.P. (1993). Conformational distributions of a four-way DNA junction revealed by time resolved fluorescence resonance energy transfer. Biochemistry 32, 13852-13860.
-
(1993)
Biochemistry
, vol.32
, pp. 13852-13860
-
-
Eis, P.S.1
Millar, D.P.2
-
20
-
-
0030886293
-
Structure of Cre recombinase complexed with DNA in a site-specific recombination synapse
-
Guo, F., Gopaul, D.N., and Van Duyne, G.D. (1997). Structure of Cre recombinase complexed with DNA in a site-specific recombination synapse. Nature 389, 40-46.
-
(1997)
Nature
, vol.389
, pp. 40-46
-
-
Guo, F.1
Gopaul, D.N.2
Van Duyne, G.D.3
-
21
-
-
0023700277
-
Holliday junctions in Flp recombination: Resolution by step-arrest mutants of Flp protein
-
Jayaram, M., Crain, K.L., Parsons, R.L., and Harshey, R.M. (1988). Holliday junctions in Flp recombination: resolution by step-arrest mutants of Flp protein. Proc. Natl. Acad. Sci. USA 85, 7902-7906.
-
(1988)
Proc. Natl. Acad. Sci. USA
, vol.85
, pp. 7902-7906
-
-
Jayaram, M.1
Crain, K.L.2
Parsons, R.L.3
Harshey, R.M.4
-
22
-
-
0027435209
-
Mechanistic and structural complexity in the site-specific recombination pathways of Int and Flp
-
Landy, A. (1993). Mechanistic and structural complexity in the site-specific recombination pathways of Int and Flp. Curr. Opin. Genet. Dev. 3, 699-707.
-
(1993)
Curr. Opin. Genet. Dev.
, vol.3
, pp. 699-707
-
-
Landy, A.1
-
23
-
-
0028906487
-
Role of partner homology in DNA recombination: Complementary base pairing orients the 5′-hydroxyl for strand joining during Flp site-specific recombination
-
Lee, J., and Jayaram, M. (1995). Role of partner homology in DNA recombination: complementary base pairing orients the 5′-hydroxyl for strand joining during Flp site-specific recombination. J. Biol. Chem. 270, 4042-4052.
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 4042-4052
-
-
Lee, J.1
Jayaram, M.2
-
24
-
-
0028124969
-
Directed protein replacement in recombination full sites reveals trans-horizontal DNA cleavage by Flp recombinase
-
Lee, J., Whang, I., Lee, J., and Jayaram, M. (1994). Directed protein replacement in recombination full sites reveals trans-horizontal DNA cleavage by Flp recombinase. EMBO J. 13, 5346-5354.
-
(1994)
EMBO J.
, vol.13
, pp. 5346-5354
-
-
Lee, J.1
Whang, I.2
Lee, J.3
Jayaram, M.4
-
25
-
-
0029052633
-
Junction mobility and resolution of Holliday structures by Flp site-specific recombinase
-
Lee, J., Lee, J., and Jayaram, M. (1995). Junction mobility and resolution of Holliday structures by Flp site-specific recombinase. J. Biol. Chem. 270, 19086-19092.
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 19086-19092
-
-
Lee, J.1
Lee, J.2
Jayaram, M.3
-
26
-
-
0029993536
-
Assembly and orientation of Flp recombinase active sites on two-, three- and four-armed DNA substrates: Implications for a recombination mechanism
-
Lee, J., Whang, I., and Jayaram, M. (1996). Assembly and orientation of Flp recombinase active sites on two-, three- and four-armed DNA substrates: implications for a recombination mechanism. J. Mol. Biol. 257, 532-549.
-
(1996)
J. Mol. Biol.
, vol.257
, pp. 532-549
-
-
Lee, J.1
Whang, I.2
Jayaram, M.3
-
27
-
-
0030661988
-
Mechanism of active site exclusion in a site-specific recombinase: Role of the DNA substrate in conferring half-of-the sites activity
-
Lee, J., Tonozuka, T., and Jayaram, M. (1997). Mechanism of active site exclusion in a site-specific recombinase: role of the DNA substrate in conferring half-of-the sites activity. Genes Dev. 11, 3061-3071.
-
(1997)
Genes Dev.
, vol.11
, pp. 3061-3071
-
-
Lee, J.1
Tonozuka, T.2
Jayaram, M.3
-
28
-
-
0024804575
-
DNAse I cleavage of branched DNA molecules
-
Lu, M., Guo, Q., Seeman, N.C., and Kallenbach, N.R. (1989). DNAse I cleavage of branched DNA molecules. J. Biol. Chem. 264, 20851-20854.
-
(1989)
J. Biol. Chem.
, vol.264
, pp. 20851-20854
-
-
Lu, M.1
Guo, Q.2
Seeman, N.C.3
Kallenbach, N.R.4
-
29
-
-
0029127499
-
The role of DNA bending in Flp-mediated site-specific recombination
-
Luetke, K.H., and Sadowski, P.D. (1995). The role of DNA bending in Flp-mediated site-specific recombination. J. Mol. Biol. 251, 493-506.
-
(1995)
J. Mol. Biol.
, vol.251
, pp. 493-506
-
-
Luetke, K.H.1
Sadowski, P.D.2
-
30
-
-
0024458010
-
Fluorescence resonance energy transfer shows that the four-way DNA junction is a right-handed cross of antiparallel molecules
-
Murchie, A.I.H., Clegg, R.M., von Kitzing, E., Duckett, D.R., Diekmann, S., and Lilley, D.M.J. (1989). Fluorescence resonance energy transfer shows that the four-way DNA junction is a right-handed cross of antiparallel molecules. Nature 341, 763-765.
-
(1989)
Nature
, vol.341
, pp. 763-765
-
-
Murchie, A.I.H.1
Clegg, R.M.2
Von Kitzing, E.3
Duckett, D.R.4
Diekmann, S.5
Lilley, D.M.J.6
-
31
-
-
0029240229
-
Swapping DNA strands and sensing homology without branch migration in λ site-specific recombination
-
Nunes-Duby, S.E., Azaro, M.A., and Landy, A. (1995). Swapping DNA strands and sensing homology without branch migration in λ site-specific recombination. Curr. Biol. 5, 139-148.
-
(1995)
Curr. Biol.
, vol.5
, pp. 139-148
-
-
Nunes-Duby, S.E.1
Azaro, M.A.2
Landy, A.3
-
32
-
-
0028968305
-
Structure of a multisubunit complex that promotes branch migration
-
Parsons, C.A., Stasiak, A., Bennett, R.J., and West, S.C. (1995). Structure of a multisubunit complex that promotes branch migration. Nature 374, 375-378.
-
(1995)
Nature
, vol.374
, pp. 375-378
-
-
Parsons, C.A.1
Stasiak, A.2
Bennett, R.J.3
West, S.C.4
-
33
-
-
0029806695
-
Crystal structure of DNA recombination protein RuvA and a model for its binding to Holliday junction
-
Rafferty, J.B., Sedelnikova, S.E., Hargraves, D., Artymiuk, P.J., Baker, P.J., Sharples, G.J., Mahdi, A.A., Lloyd, R.G., and Rice, D.W. (1996). Crystal structure of DNA recombination protein RuvA and a model for its binding to Holliday junction. Science 274, 415-421.
-
(1996)
Science
, vol.274
, pp. 415-421
-
-
Rafferty, J.B.1
Sedelnikova, S.E.2
Hargraves, D.3
Artymiuk, P.J.4
Baker, P.J.5
Sharples, G.J.6
Mahdi, A.A.7
Lloyd, R.G.8
Rice, D.W.9
-
34
-
-
0027173542
-
Site-specific genetic recombination: Hops, flips, and flops
-
Sadowski, P.D. (1993). Site-specific genetic recombination: hops, flips, and flops. FASEB J. 7, 760-767
-
(1993)
FASEB J.
, vol.7
, pp. 760-767
-
-
Sadowski, P.D.1
-
35
-
-
0003903343
-
-
Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press
-
Sambrook, J., Fritsch, E.F., and Maniatis, T. (1989). Molecular Cloning: A Laboratory Manual (Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press).
-
(1989)
Molecular Cloning: A Laboratory Manual
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
-
36
-
-
0025642871
-
Flp protein of the 2μm circle plasmid of yeast induces multiple bends in the Flp recognition target site
-
Schwartz, C.J.E., and Sadowski, P.D. (1990). Flp protein of the 2μm circle plasmid of yeast induces multiple bends in the Flp recognition target site. J. Mol. Biol. 216, 289-298.
-
(1990)
J. Mol. Biol.
, vol.216
, pp. 289-298
-
-
Schwartz, C.J.E.1
Sadowski, P.D.2
-
37
-
-
0025266027
-
The stereo-chemistry of a four-way DNA junction: A theoretical study
-
von Kitzing, E., Lilley, D.M.J., and Diekman, S. (1990). The stereo-chemistry of a four-way DNA junction: a theoretical study. Nucl. Acids Res. 18, 2671-2683.
-
(1990)
Nucl. Acids Res.
, vol.18
, pp. 2671-2683
-
-
Von Kitzing, E.1
Lilley, D.M.J.2
Diekman, S.3
-
38
-
-
0031588022
-
Recognition and manipulation of branched DNA structures by junction-resolving enzymes
-
White, M.F., Giraud-Panis, M.-J.E., Pohler, R.G., and Lilley, D.M.J. (1997). Recognition and manipulation of branched DNA structures by junction-resolving enzymes. J. Mol. Biol. 269, 647-664.
-
(1997)
J. Mol. Biol.
, vol.269
, pp. 647-664
-
-
White, M.F.1
Giraud-Panis, M.-J.E.2
Pohler, R.G.3
Lilley, D.M.J.4
-
39
-
-
0029010662
-
Homology requirements for ligation and strand exchange by the Flp recombinase
-
Zhu, X.D., Pan, G., Luetke, K., and Sadowski, P.D. (1995). Homology requirements for ligation and strand exchange by the Flp recombinase. J. Biol. Chem. 270, 11646-11653.
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 11646-11653
-
-
Zhu, X.D.1
Pan, G.2
Luetke, K.3
Sadowski, P.D.4
|