메뉴 건너뛰기




Volumn 1, Issue 4, 1998, Pages 483-493

Structural alterations and conformational dynamics in Holliday junctions induced by binding of a site-specific recombinase

Author keywords

[No Author keywords available]

Indexed keywords

CROSSOVER JUNCTION ENDODEOXYRIBONUCLEASE; DEOXYRIBONUCLEASE; DNA; DNA POLYMERASE; INTEGRASE; INTEGRON INTEGRASE INTI1; OUTER MEMBRANE PROTEIN; RECOMBINASE; VIRUS PROTEIN;

EID: 0032012077     PISSN: 10972765     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1097-2765(00)80049-0     Document Type: Article
Times cited : (20)

References (39)
  • 1
    • 0030575840 scopus 로고    scopus 로고
    • Classification of nucleic acid junctions
    • Altona, C. (1996). Classification of nucleic acid junctions. J. Mol. Biol. 263, 568-581.
    • (1996) J. Mol. Biol. , vol.263 , pp. 568-581
    • Altona, C.1
  • 2
    • 0028999728 scopus 로고
    • Effects of Holliday junction position on Xer-mediated recombination in vitro
    • Arciszewska, L.K., Grainge, I., and Sherratt, D.J. (1995). Effects of Holliday junction position on Xer-mediated recombination in vitro. EMBO J. 14, 2651-2660.
    • (1995) EMBO J. , vol.14 , pp. 2651-2660
    • Arciszewska, L.K.1    Grainge, I.2    Sherratt, D.J.3
  • 3
    • 0030927777 scopus 로고    scopus 로고
    • Action of site-specific recombinases XerC and XerD on tethered Holliday junctions
    • Arciszewska, L.K., Grainge, I., and Sherratt, D.J. (1997). Action of site-specific recombinases XerC and XerD on tethered Holliday junctions. EMBO J. 16, 3731-3743.
    • (1997) EMBO J. , vol.16 , pp. 3731-3743
    • Arciszewska, L.K.1    Grainge, I.2    Sherratt, D.J.3
  • 4
    • 0030950350 scopus 로고    scopus 로고
    • The isomeric preference of Holliday junctions influences resolution bias by λ integrase
    • Azaro, M.A., and Landy, A. (1997). The isomeric preference of Holliday junctions influences resolution bias by λ integrase. EMBO J. 16, 3744-3755.
    • (1997) EMBO J. , vol.16 , pp. 3744-3755
    • Azaro, M.A.1    Landy, A.2
  • 5
    • 0029087265 scopus 로고
    • Structural analysis of the RuvC-Holliday junction complex reveals an unfolded junction
    • Bennett, R.J., and West, S.C. (1995). Structural analysis of the RuvC-Holliday junction complex reveals an unfolded junction. J. Mol. Biol. 252, 213-226.
    • (1995) J. Mol. Biol. , vol.252 , pp. 213-226
    • Bennett, R.J.1    West, S.C.2
  • 7
    • 0026651559 scopus 로고
    • DNA cleavage in trans by the active site tyrosine during Flp recombination: Switching protein partners before exchanging strands
    • Chen, J.W., Lee, J., and Jayaram, M. (1992a). DNA cleavage in trans by the active site tyrosine during Flp recombination: switching protein partners before exchanging strands. Cell 69, 647-658.
    • (1992) Cell , vol.69 , pp. 647-658
    • Chen, J.W.1    Lee, J.2    Jayaram, M.3
  • 8
    • 0026640378 scopus 로고
    • Bending incompetent variants of Flp recombinase mediate strand transfer in half-site recombinations: Role of DNA bending in recombination
    • Chen, J.W., Evans, B.R., Rosenfeldt, H., and Jayaram, M. (1992b). Bending incompetent variants of Flp recombinase mediate strand transfer in half-site recombinations: role of DNA bending in recombination. Gene 119, 37-48.
    • (1992) Gene , vol.119 , pp. 37-48
    • Chen, J.W.1    Evans, B.R.2    Rosenfeldt, H.3    Jayaram, M.4
  • 9
    • 0026639433 scopus 로고
    • Fluorescence resonance energy transfer analysis of the structure of the four-way junction
    • Clegg, R.M., Murchie, A.I.H., Zechel, A., Carlberg, C., Diekmann, S., and Lilley, D.M.J. (1992). Fluorescence resonance energy transfer analysis of the structure of the four-way junction. Biochemistry 31, 4846-4856.
    • (1992) Biochemistry , vol.31 , pp. 4846-4856
    • Clegg, R.M.1    Murchie, A.I.H.2    Zechel, A.3    Carlberg, C.4    Diekmann, S.5    Lilley, D.M.J.6
  • 10
    • 0023551842 scopus 로고
    • Gel electrophoretic analysis of the geometry of a DNA four-way junction
    • Cooper, J.P., and Hagerman, P.J. (1987). Gel electrophoretic analysis of the geometry of a DNA four-way junction. J. Mol. Biol. 198, 711-719.
    • (1987) J. Mol. Biol. , vol.198 , pp. 711-719
    • Cooper, J.P.1    Hagerman, P.J.2
  • 11
    • 0000231785 scopus 로고
    • Geometry of a branched DNA junction in solution
    • Cooper, J.P., and Hagerman, P.J. (1989). Geometry of a branched DNA junction in solution. Proc. Natl. Acad. Sci. USA 86, 7336-7340.
    • (1989) Proc. Natl. Acad. Sci. USA , vol.86 , pp. 7336-7340
    • Cooper, J.P.1    Hagerman, P.J.2
  • 12
    • 0024236673 scopus 로고
    • The mechanism of conservative site-specific recombination
    • Craig, N.L. (1988). The mechanism of conservative site-specific recombination. Annu. Rev. Genet. 22, 77-105.
    • (1988) Annu. Rev. Genet. , vol.22 , pp. 77-105
    • Craig, N.L.1
  • 13
    • 0027145151 scopus 로고
    • χ structures by Flp site-specific recombinase
    • χ structures by Flp site-specific recombinase. J. Mol. Biol. 234, 522-533.
    • (1993) J. Mol. Biol. , vol.234 , pp. 522-533
    • Dixon, J.E.1    Sadowski, P.D.2
  • 14
    • 0028096839 scopus 로고
    • χ structures by the FLP recombinase of 2 micron plasmid
    • χ structures by the FLP recombinase of 2 micron plasmid. J. Mol. Biol. 243, 199-207.
    • (1994) J. Mol. Biol. , vol.243 , pp. 199-207
    • Dixon, J.E.1    Sadowski, P.D.2
  • 15
    • 0029589247 scopus 로고
    • The Flp recombinase cleaves Holliday junctions in trans
    • Dixon, J.E., Shaikh, A.C., and Sadowski, P.D. (1995).The Flp recombinase cleaves Holliday junctions in trans. Mol. Microbiol. 18, 449-458.
    • (1995) Mol. Microbiol. , vol.18 , pp. 449-458
    • Dixon, J.E.1    Shaikh, A.C.2    Sadowski, P.D.3
  • 18
    • 0029562737 scopus 로고
    • The global folding of four-way helical junctions in RNA, including that in U1 snRNA
    • Duckett, D.R., Murchie, A.I.H., and Lilley, D.M.J. (1995b). The global folding of four-way helical junctions in RNA, including that in U1 snRNA. Cell 83, 1027-1036.
    • (1995) Cell , vol.83 , pp. 1027-1036
    • Duckett, D.R.1    Murchie, A.I.H.2    Lilley, D.M.J.3
  • 19
    • 0027751968 scopus 로고
    • Conformational distributions of a four-way DNA junction revealed by time resolved fluorescence resonance energy transfer
    • Eis, P.S., and Millar, D.P. (1993). Conformational distributions of a four-way DNA junction revealed by time resolved fluorescence resonance energy transfer. Biochemistry 32, 13852-13860.
    • (1993) Biochemistry , vol.32 , pp. 13852-13860
    • Eis, P.S.1    Millar, D.P.2
  • 20
    • 0030886293 scopus 로고    scopus 로고
    • Structure of Cre recombinase complexed with DNA in a site-specific recombination synapse
    • Guo, F., Gopaul, D.N., and Van Duyne, G.D. (1997). Structure of Cre recombinase complexed with DNA in a site-specific recombination synapse. Nature 389, 40-46.
    • (1997) Nature , vol.389 , pp. 40-46
    • Guo, F.1    Gopaul, D.N.2    Van Duyne, G.D.3
  • 21
    • 0023700277 scopus 로고
    • Holliday junctions in Flp recombination: Resolution by step-arrest mutants of Flp protein
    • Jayaram, M., Crain, K.L., Parsons, R.L., and Harshey, R.M. (1988). Holliday junctions in Flp recombination: resolution by step-arrest mutants of Flp protein. Proc. Natl. Acad. Sci. USA 85, 7902-7906.
    • (1988) Proc. Natl. Acad. Sci. USA , vol.85 , pp. 7902-7906
    • Jayaram, M.1    Crain, K.L.2    Parsons, R.L.3    Harshey, R.M.4
  • 22
    • 0027435209 scopus 로고
    • Mechanistic and structural complexity in the site-specific recombination pathways of Int and Flp
    • Landy, A. (1993). Mechanistic and structural complexity in the site-specific recombination pathways of Int and Flp. Curr. Opin. Genet. Dev. 3, 699-707.
    • (1993) Curr. Opin. Genet. Dev. , vol.3 , pp. 699-707
    • Landy, A.1
  • 23
    • 0028906487 scopus 로고
    • Role of partner homology in DNA recombination: Complementary base pairing orients the 5′-hydroxyl for strand joining during Flp site-specific recombination
    • Lee, J., and Jayaram, M. (1995). Role of partner homology in DNA recombination: complementary base pairing orients the 5′-hydroxyl for strand joining during Flp site-specific recombination. J. Biol. Chem. 270, 4042-4052.
    • (1995) J. Biol. Chem. , vol.270 , pp. 4042-4052
    • Lee, J.1    Jayaram, M.2
  • 24
    • 0028124969 scopus 로고
    • Directed protein replacement in recombination full sites reveals trans-horizontal DNA cleavage by Flp recombinase
    • Lee, J., Whang, I., Lee, J., and Jayaram, M. (1994). Directed protein replacement in recombination full sites reveals trans-horizontal DNA cleavage by Flp recombinase. EMBO J. 13, 5346-5354.
    • (1994) EMBO J. , vol.13 , pp. 5346-5354
    • Lee, J.1    Whang, I.2    Lee, J.3    Jayaram, M.4
  • 25
    • 0029052633 scopus 로고
    • Junction mobility and resolution of Holliday structures by Flp site-specific recombinase
    • Lee, J., Lee, J., and Jayaram, M. (1995). Junction mobility and resolution of Holliday structures by Flp site-specific recombinase. J. Biol. Chem. 270, 19086-19092.
    • (1995) J. Biol. Chem. , vol.270 , pp. 19086-19092
    • Lee, J.1    Lee, J.2    Jayaram, M.3
  • 26
    • 0029993536 scopus 로고    scopus 로고
    • Assembly and orientation of Flp recombinase active sites on two-, three- and four-armed DNA substrates: Implications for a recombination mechanism
    • Lee, J., Whang, I., and Jayaram, M. (1996). Assembly and orientation of Flp recombinase active sites on two-, three- and four-armed DNA substrates: implications for a recombination mechanism. J. Mol. Biol. 257, 532-549.
    • (1996) J. Mol. Biol. , vol.257 , pp. 532-549
    • Lee, J.1    Whang, I.2    Jayaram, M.3
  • 27
    • 0030661988 scopus 로고    scopus 로고
    • Mechanism of active site exclusion in a site-specific recombinase: Role of the DNA substrate in conferring half-of-the sites activity
    • Lee, J., Tonozuka, T., and Jayaram, M. (1997). Mechanism of active site exclusion in a site-specific recombinase: role of the DNA substrate in conferring half-of-the sites activity. Genes Dev. 11, 3061-3071.
    • (1997) Genes Dev. , vol.11 , pp. 3061-3071
    • Lee, J.1    Tonozuka, T.2    Jayaram, M.3
  • 28
    • 0024804575 scopus 로고
    • DNAse I cleavage of branched DNA molecules
    • Lu, M., Guo, Q., Seeman, N.C., and Kallenbach, N.R. (1989). DNAse I cleavage of branched DNA molecules. J. Biol. Chem. 264, 20851-20854.
    • (1989) J. Biol. Chem. , vol.264 , pp. 20851-20854
    • Lu, M.1    Guo, Q.2    Seeman, N.C.3    Kallenbach, N.R.4
  • 29
    • 0029127499 scopus 로고
    • The role of DNA bending in Flp-mediated site-specific recombination
    • Luetke, K.H., and Sadowski, P.D. (1995). The role of DNA bending in Flp-mediated site-specific recombination. J. Mol. Biol. 251, 493-506.
    • (1995) J. Mol. Biol. , vol.251 , pp. 493-506
    • Luetke, K.H.1    Sadowski, P.D.2
  • 30
    • 0024458010 scopus 로고
    • Fluorescence resonance energy transfer shows that the four-way DNA junction is a right-handed cross of antiparallel molecules
    • Murchie, A.I.H., Clegg, R.M., von Kitzing, E., Duckett, D.R., Diekmann, S., and Lilley, D.M.J. (1989). Fluorescence resonance energy transfer shows that the four-way DNA junction is a right-handed cross of antiparallel molecules. Nature 341, 763-765.
    • (1989) Nature , vol.341 , pp. 763-765
    • Murchie, A.I.H.1    Clegg, R.M.2    Von Kitzing, E.3    Duckett, D.R.4    Diekmann, S.5    Lilley, D.M.J.6
  • 31
    • 0029240229 scopus 로고
    • Swapping DNA strands and sensing homology without branch migration in λ site-specific recombination
    • Nunes-Duby, S.E., Azaro, M.A., and Landy, A. (1995). Swapping DNA strands and sensing homology without branch migration in λ site-specific recombination. Curr. Biol. 5, 139-148.
    • (1995) Curr. Biol. , vol.5 , pp. 139-148
    • Nunes-Duby, S.E.1    Azaro, M.A.2    Landy, A.3
  • 32
    • 0028968305 scopus 로고
    • Structure of a multisubunit complex that promotes branch migration
    • Parsons, C.A., Stasiak, A., Bennett, R.J., and West, S.C. (1995). Structure of a multisubunit complex that promotes branch migration. Nature 374, 375-378.
    • (1995) Nature , vol.374 , pp. 375-378
    • Parsons, C.A.1    Stasiak, A.2    Bennett, R.J.3    West, S.C.4
  • 34
    • 0027173542 scopus 로고
    • Site-specific genetic recombination: Hops, flips, and flops
    • Sadowski, P.D. (1993). Site-specific genetic recombination: hops, flips, and flops. FASEB J. 7, 760-767
    • (1993) FASEB J. , vol.7 , pp. 760-767
    • Sadowski, P.D.1
  • 36
    • 0025642871 scopus 로고
    • Flp protein of the 2μm circle plasmid of yeast induces multiple bends in the Flp recognition target site
    • Schwartz, C.J.E., and Sadowski, P.D. (1990). Flp protein of the 2μm circle plasmid of yeast induces multiple bends in the Flp recognition target site. J. Mol. Biol. 216, 289-298.
    • (1990) J. Mol. Biol. , vol.216 , pp. 289-298
    • Schwartz, C.J.E.1    Sadowski, P.D.2
  • 37
    • 0025266027 scopus 로고
    • The stereo-chemistry of a four-way DNA junction: A theoretical study
    • von Kitzing, E., Lilley, D.M.J., and Diekman, S. (1990). The stereo-chemistry of a four-way DNA junction: a theoretical study. Nucl. Acids Res. 18, 2671-2683.
    • (1990) Nucl. Acids Res. , vol.18 , pp. 2671-2683
    • Von Kitzing, E.1    Lilley, D.M.J.2    Diekman, S.3
  • 38
    • 0031588022 scopus 로고    scopus 로고
    • Recognition and manipulation of branched DNA structures by junction-resolving enzymes
    • White, M.F., Giraud-Panis, M.-J.E., Pohler, R.G., and Lilley, D.M.J. (1997). Recognition and manipulation of branched DNA structures by junction-resolving enzymes. J. Mol. Biol. 269, 647-664.
    • (1997) J. Mol. Biol. , vol.269 , pp. 647-664
    • White, M.F.1    Giraud-Panis, M.-J.E.2    Pohler, R.G.3    Lilley, D.M.J.4
  • 39
    • 0029010662 scopus 로고
    • Homology requirements for ligation and strand exchange by the Flp recombinase
    • Zhu, X.D., Pan, G., Luetke, K., and Sadowski, P.D. (1995). Homology requirements for ligation and strand exchange by the Flp recombinase. J. Biol. Chem. 270, 11646-11653.
    • (1995) J. Biol. Chem. , vol.270 , pp. 11646-11653
    • Zhu, X.D.1    Pan, G.2    Luetke, K.3    Sadowski, P.D.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.