Complete genomic sequence of border disease virus, a Pestivirus from sheep

Journal of Virology

Volumn 72, Issue 6, 1998, Pages 5165-5173

  Becher, Paul ^a   Orlich, Michaela ^a   Thiel, Heinz Jürgen ^a  

^a JUSTUS LIEBIG UNIVERSITY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

SERINE PROTEINASE;

AMINO ACID SEQUENCE; ARTICLE; CATTLE DISEASE; FLAVIVIRUS; GENETIC ANALYSIS; GENOME; IMMUNOBLOTTING; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PESTIVIRUS; PRIORITY JOURNAL; PROTEIN DEGRADATION; SEQUENCE ANALYSIS; SHEEP;

EID: 0031925352     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/jvi.72.6.5165-5173.1998     Document Type: Article

References (57)

1. Barlow, R. M., A. C. Gardiner, and P. F. Nettleton. 1983. The pathology of a spontaneous and experimental mucosal disease in sheep recovered from clinical border disease. J. Comp. Pathol. 93:451-461.
2. Becher, P., M. König, D. Paton, and H.-J. Thiel. 1995. Further characterization of border disease virus isolates: evidence for the presence of more than three species within the genus pestivirus. Virology 209:200-206.
3. Becher, P., G. Meyers, A. D. Shannon, and H.-J. Thiel. 1996. Cytopathogenicity of border disease virus is correlated with integration of cellular sequences into the viral genome. J. Virol. 70:2992-2998.
4. Becher, P., M. Orlich, A. D. Shannon, G. Horner, M. Konig, and H.-J. Thiel. 1997. Phylogenetic analysis of pestiviruses from domestic and wild ruminants. J. Gen. Virol. 78:1357-1366.
5. Becher, P., A. D. Shannon, N. Tautz, and H.-J. Thiel. 1994. Molecular characterization of border disease virus, a pestivirus from sheep. Virology 198:542-551.
6. Becher, P., and H.-J. Thiel. Unpublished data.
7. Blackwell, J. L., and M. A. Brinton. 1997. Translation elongation factor-1 alpha interacts with the 3′ stem-loop region of West Nile virus genomic RNA. J. Virol. 71:6433-6444.
8. Blackwell, J. L., and M. A. Brinton. 1995. BHK cell proteins bind to the 3′ stem-loop structure of the West Nile virus genome RNA. J. Virol. 69:5650-5658.
9. Blight, K. J., and C. M. Rice. 1997. Secondary structure determination of the conserved 98-base sequence at the 3′ terminus of hepatitis C virus genome RNA. J. Virol. 71:7345-7352.
10. Brockman, S., L. Wood, S. Edwards, and J. W. Harkness. 1988. Selection of an appropriate pestivirus strain for border disease serodiagnosis. Vet. Rec. 122:586-587.
11. Buck, K. W. 1996. Comparison of the replication of positive-stranded RNA viruses of plants and animals. Adv. Virus Res. 47:159-251.
12. Collett, M. S., R. Larson, S. Belzer, and E. Retzel. 1988. Proteins encoded by bovine viral diarrhea virus: the genome organization of a pestivirus. Virology 165:200-208.
13. Collett, M. S., R. Larson, C. Gold, D. Strick, D. K. Anderson, and A. F. Purchio. 1988. Molecular cloning and nucleotide sequence of the pestivirus bovine viral diarrhea virus. Virology 165:191-199.
14. de Moerlooze, L., C. Lecomte, S. Brown-Shimmer, D. Schmetz, C. Guiot, D. Vandenbergh, D. Allaer, M. Rossius, G. Chappuis, D. Dina, A. Renard, and J. A. Martial. 1993. Nucleotide sequence of the bovine viral diarrhoea virus Osloss strain: comparison with related viruses and identification of specific DNA probes in the 5′ untranslated region. J. Gen. Virol. 74:1433-1438.
15. Deng, R., and K. V. Brock. 1993. 5′ and 3′ untranslated regions of pestivirus genome: primary and secondary structure analyses. Nucleic Acids Res. 21: 1949-1957.
16. Deng, R., and K. V. Brock. 1992. Molecular cloning and nucleotide sequence of a pestivirus genome, noncytopathogenic bovine viral diarrhea virus strain SD-1. Virology 191:867-879.
17. Devereux, J., P. Haeberli, and O. A. Smithies. 1984. A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res. 12:387-395.
18. Elbers, K., N. Tautz, P. Becher, T. Rümenapf, and H.-J. Thiel. 1996. Processing in the pestivirus E2-NS2 region: identification of the nonstructural proteins p7 and E2p7. J. Virol. 70:4131-4135.
19. Felsenstein, J. 1993. PHYLIP (Phylogeny Inference Package), 3.5c ed. Department of Genetics, University of Washington, Seattle.
20. Ito, T., and M. M. C. Lai. 1997. Determination of the secondary structure of and cellular protein binding to the 3′ untranslated region of the hepatitis C virus RNA genome. J. Virol. 71:8698-8706.
21. Kolykhalov, A. A., S. M. Feinstone, and C. M. Rice. 1996. Identification of a highly conserved sequence element at the 3′ terminus of hepatitis C virus genome RNA. J. Virol. 70:3363-3371.
22. Mandl, C. W., C. Kunz, and F. X. Heinz. 1991. Presence of (poly)A in a flavivirus: significant differences between the 3′ noncoding regions of the genomic RNAs of tick-borne encephalitis virus strains. J. Virol. 65:4070-4077.
23. Meyers, G., T. Rümenapf, and H.-J. Thiel. 1989. Molecular cloning and nucleotide sequence of the genome of hog cholera virus. Virology 171:555-567.
24. Meyers, G., N. Tautz, P. Becher, H.-J. Thiel, and B. Kümmerer. 1996. Recovery of cytopathogenic and noncytopathogenic bovine viral diarrhea viruses from cDNA constructs. J. Virol. 70:8606-8613.
25. Meyers, G., and H.-J. Thiel. 1996. Molecular characterization of pestiviruses. Adv. Virus Res. 47:53-118.
26. Meyers, G., H.-J. Thiel, and T. Rümenapf. 1996. Classical swine fever virus: recovery of infectious viruses from cDNA constructs and generation of recombinant cytopathogenic defective interfering particles. J. Virol. 70: 1588-1595.
27. Moormann, R. J. M., H. G. P. van Gennip, G. K. W. Miedema, M. M. Hulst, and P. A. van Rijn. 1996. Infectious RNA transcribed from an engineered full-length cDNA template of the genome of a pestivirus. J. Virol. 70:763-770.
28. Moormann, R. J. M., P. A. M. Warmerdam, B. Van der Meer, W. M. M. Schaaper, G. Wensvoort, and M. M. Hulst. 1990. Molecular cloning and nucleotide sequence of hog cholera virus strain brescia and mapping of the genomic region encoding envelope glycoprotein E1. Virology 177:184-198.
29. Nettleton, P. F. 1990. Pestivirus infections in ruminants other than cattle. Rev. Sci. Tech. Off. Int. Epizoot. 9:131-150.
30. Nettleton, P. F., J. S. Gilmour, J. A. Herring, and J. A. Sinclair. 1992. The production and survival of lambs persistently infected with border disease virus. Comp. Immunol. Microbiol. Infect. Dis. 15:179-188.
31. Paton, D. J. 1995. Pestivirus diversity. J. Comp. Pathol. 112:215-236.
32. Poole, T. L., C. Wang, R. A. Popp, L. N. D. Potgieter, A. Siddiqui, and M. S. Collett. 1995. Pestivirus translation occurs by internal ribosome entry. Virology 206:750-754.
33. Rice, C. M. 1996. Flaviviridae: the viruses and their replication, p. 931-959. In B. N. Fields, D. M. Knipe, and P. M. Howley (ed.), Fields virology, 3rd ed, vol. 1. Lippincott-Raven Publishers, Philadelphia, Pa.
34. Ridpath, J. F., and S. R. Bolin. 1995. The genomic sequence of a virulent bovine viral diarrhea virus (BVDV) from the type 2 genotype: detection of a large genomic insertion in a noncytopathic BVDV. Virology 212:39-46.
35. Rijnbrand, R., T. van der Straaten, P. A. van Rijn, W. J. M. Spaan, and P. J. Bredenbeek. 1997. Internal entry of ribosomes is directed by the 5′ noncoding region of classical swine fever virus and is dependent on the presence of an RNA pseudoknot upstream of the initiation codon. J. Virol. 71:451-457.
36. Ruggli, N., J.-D. Tratschin, C. Mittelholzer, and M. A. Hofmann. 1996. Nucleotide sequence of classical swine fever virus strain Alfort/187 and transcription of infectious RNA from stably cloned full-length cDNA. J. Virol. 70:3478-3487.
37. Rümenapf, T., G. Unger, J. H. Strauss, and H.-J. Thiel. 1993. Processing of the envelope glycoproteins of pestiviruses. J. Virol. 67:3288-3295.
38. Sanger, F., S. Nicklen, and A. R. Coulson. 1977. DNA sequencing with chain-terminating inhibitors. Proc. Natl. Acad. Sci. USA 74:5463-5467.
39. Schägger, H., and G. von Jagow. 1987. Tricine-sodium dodecyl sulfate-polyacrylamide gel electrophoresis for the separation of proteins in the range from 1 to 100 kDa. Anal. Biochem. 166:368-379.
40. Snowdon, W. A. 1973. Mucosal disease: its incidence and diagnosis in Australia. Bull. Off. Int. Epizoot. 79:529-542.
41. Stark, R., G. Meyers, T. Rümenapf, and H.-J. Thiel. 1993. Processing of pestivirus polyprotein: cleavage site between autoprotease and nucleocapsid protein of classical swine fever virus. J. Virol. 67:7088-7095.
42. Strauss, J. H., and E. G. Strauss. 1994. The alphaviruses: gene expression, replication, and evolution. Microbiol. Rev. 58:491-562.
43. Sutter, G., M. Ohlmann, and V. Erfle. 1995. Non-replicating vaccinia vector efficiently expresses bacteriophage T7 RNA polymerase. FEBS Lett. 371:9-12.
44. Tanaka, T., N. Kato, M.-J. Cho, K. Sugiyama, and K. Shimotono. 1996. Structure of the 3′ terminus of the hepatitis C virus genome. J. Virol. 70:3307-3312.
45. Tautz, N., K. Elbers, D. Stoll, G. Meyers, and H.-J. Thiel. 1997. Serine protease of pestiviruses: determination of cleavage sites. J. Virol. 71:5415-5422.
46. Terpstra, C. 1981. Border disease: virus persistence, antibody response and transmission studies. Res. Vet. Sci. 30:185-191.
47. Tijssen, P., C. Pellerin, J. Lecomte, and J. Van Den Hurk. 1996. Immunodominant E2 (gp53): sequences of highly virulent bovine viral diarrhea group II viruses indicate a close relationship to a subgroup of border disease viruses. Virology 217:356-361.
48. Vantsis, J. T., R. M. Barlow, J. Fraser, J. C. Rennie, and D. L. Mould. 1976. Experiments in border disease. VIII. Propagation and properties of a cytopathic virus. J. Comp. Pathol. 86:111-120.
49. Wallner, G., C. W. Mandl, C. Kunz, and F. X. Heinz. 1995. The flavivirus 3′-noncoding region: extensive size heterogeneity independent of evolutionary relationships among tick-borne encephalitis virus. Virology 213:169-178.
50. Wang, C., P. Sarnow, and A. Siddique. 1993. Translation of human hepatitis C virus RNA in cultured cells is mediated by an internal ribosome binding mechanism. J. Virol. 67:3338-3344.
51. Wengler, G., D. W. Bradley, M. S. Collett, F. X. Heinz, R. W. Schlesinger, and J. H. Strauss. 1995. Flaviviridae. In F. A. Murphy, C. M. Fauquet, D. H. L. Bishop, S. A. Ghabrial, A. W. Jarvis, G. P. Martelli, M. A. Mayo, and M. D. Summers (ed.), Virus taxonomy. Sixth Report of the International Committee on Taxonomy of Viruses. Springer-Verlag, Vienna, Austria.
52. Wensvoort, G., H. de Smith, and C. Terpstra. 1994. A non-CSFV pestivirus is currently circulating among a number of Dutch pig herds and causing false-positive CSFV-serology. Report on Meeting of the National Swine Fever Laboratories. Commission of the European Communities, Brussels, Belgium.
53. Wimmer, E., C. U. Hellen, and X. Cao. 1993. Genetics of poliovirus. Annu. Rev. Genet. 27:353-436.
54. Wiskerchen, M., S. K. Belzer, and M. S. Collett. 1991. Pestivirus gene expression: the first protein product of the bovine viral diarrhea virus large open reading frame, P20, possesses proteolytic activity. J. Virol. 65:4508-4514.
55. Wiskerchen, M. A., and M. S. Collett. 1991. Pestivirus gene expression: protein p80 of bovine viral diarrhea virus is a proteinase involved in polyprotein processing. Virology 184:341-350.
56. Xu, J., E. Mendez, P. R. Caron, C. Lin, M. A. Murcko, M. S. Collett, and C. M. Rice. 1997. Bovine viral diarrhea NS3 serine proteinase: polyprotem cleavage sites, cofactor requirements, and molecular model of an enzyme essential for pestivirus replication. J. Virol. 71:5312-5322.
57. Yamada, N., K. Tanihara, A. Takada, T. Yorihuzi, M. Tsutsumi, T. Shimomura, T. Tsuji, and T. Date. 1996. Genetic organization and diversity of the 3′ noncoding region of the hepatitis C virus genome. Virology 223:255-261.