-
1
-
-
0015987426
-
Prediction of protein conformation
-
Chou PY, Fasman GD. 1974. Prediction of protein conformation. Biochemistry 13:222-245.
-
(1974)
Biochemistry
, vol.13
, pp. 222-245
-
-
Chou, P.Y.1
Fasman, G.D.2
-
3
-
-
0029996682
-
Search for the most stable folds of protein chains: I. Application of a self-consistent molecular force field theory to a problem of protein three dimensional structure prediction
-
Finkelstein AV, Reva BA. 1996. Search for the most stable folds of protein chains: I. Application of a self-consistent molecular force field theory to a problem of protein three dimensional structure prediction. Protein Eng 9:387-397.
-
(1996)
Protein Eng
, vol.9
, pp. 387-397
-
-
Finkelstein, A.V.1
Reva, B.A.2
-
4
-
-
0030584681
-
Knowledge-based potentials for protein folding: What can we learn from protein structures?
-
Godzik A. 1996. Knowledge-based potentials for protein folding: What can we learn from protein structures? Curr Biol 4:363-366.
-
(1996)
Curr Biol
, vol.4
, pp. 363-366
-
-
Godzik, A.1
-
5
-
-
0028892389
-
Are proteins ideal mixtures of amino acids? Analysis of energy parameter sets
-
Godzik A, Kolinski A, Skolnick J. 1995. Are proteins ideal mixtures of amino acids? Analysis of energy parameter sets. Protein Sci 4:2107-2117.
-
(1995)
Protein Sci
, vol.4
, pp. 2107-2117
-
-
Godzik, A.1
Kolinski, A.2
Skolnick, J.3
-
8
-
-
0028318094
-
Factors influencing the ability of knowledge-based potentials to identify native sequence-structure matches
-
Kocher JPA, Rooman MJ, Wodak SJ. 1994. Factors influencing the ability of knowledge-based potentials to identify native sequence-structure matches. J Mol Biol 235:1598-1613.
-
(1994)
J Mol Biol
, vol.235
, pp. 1598-1613
-
-
Kocher, J.P.A.1
Rooman, M.J.2
Wodak, S.J.3
-
9
-
-
0000767638
-
A reduced model of short range interactions in polypeptide chains
-
Kolinski A, Milik M, Skolnick J. 1995. A reduced model of short range interactions in polypeptide chains. J Chem Phys 103:4312-4323.
-
(1995)
J Chem Phys
, vol.103
, pp. 4312-4323
-
-
Kolinski, A.1
Milik, M.2
Skolnick, J.3
-
10
-
-
0028203492
-
Monte Carlo simulations of protein folding. I. Lattice model and interaction scheme
-
Kolinski A, Skolnick J. 1994. Monte Carlo simulations of protein folding. I. Lattice model and interaction scheme. Proteins Struct Funct Genet 18:338-352.
-
(1994)
Proteins Struct Funct Genet
, vol.18
, pp. 338-352
-
-
Kolinski, A.1
Skolnick, J.2
-
12
-
-
2642626294
-
A simplified representation of protein conformation for rapid simulation of protein folding
-
Levitt M. 1976. A simplified representation of protein conformation for rapid simulation of protein folding. J Mol Biol 227:876-888.
-
(1976)
J Mol Biol
, vol.227
, pp. 876-888
-
-
Levitt, M.1
-
13
-
-
0029772552
-
Emergence of preferred structures in a simple model of protein folding
-
Li H, Heling R, Tang C, Wingreen N. 1996. Emergence of preferred structures in a simple model of protein folding. Science 273:666-669.
-
(1996)
Science
, vol.273
, pp. 666-669
-
-
Li, H.1
Heling, R.2
Tang, C.3
Wingreen, N.4
-
14
-
-
0028147533
-
The crystal structure of a mutant protein with altered but improved hydrophobic core packing
-
Lim WA, Hodel A, Sauer RT, Richards FM. 1994. The crystal structure of a mutant protein with altered but improved hydrophobic core packing. Proc Natl Acad Sci USA 91:423-427.
-
(1994)
Proc Natl Acad Sci USA
, vol.91
, pp. 423-427
-
-
Lim, W.A.1
Hodel, A.2
Sauer, R.T.3
Richards, F.M.4
-
15
-
-
0000095890
-
A united-residue force field for off lattice protein-structure simulations. II. Parameterization of short-range interactions and determination of weights of energy terms by Z-score optimization
-
Liwo A, Pincus MR, Wawak RJ, Rockovsky S, Oldziej S, Scheraga HA. 1997. A united-residue force field for off lattice protein-structure simulations. II. Parameterization of short-range interactions and determination of weights of energy terms by Z-score optimization. J Comput Chem 18:874-887.
-
(1997)
J Comput Chem
, vol.18
, pp. 874-887
-
-
Liwo, A.1
Pincus, M.R.2
Wawak, R.J.3
Rockovsky, S.4
Oldziej, S.5
Scheraga, H.A.6
-
16
-
-
0026785519
-
Contact potential that recognizes correct folding of globular proteins
-
Maiorov VN, Crippen GD. 1992. Contact potential that recognizes correct folding of globular proteins. J Mol Biol 227:867-888.
-
(1992)
J Mol Biol
, vol.227
, pp. 867-888
-
-
Maiorov, V.N.1
Crippen, G.D.2
-
17
-
-
0030443368
-
Protein fold recognition and dynamics in the space of contact maps
-
Mirny L, Domany E. 1996. Protein fold recognition and dynamics in the space of contact maps. Proteins Struct Funct Genet 26:391-410.
-
(1996)
Proteins Struct Funct Genet
, vol.26
, pp. 391-410
-
-
Mirny, L.1
Domany, E.2
-
18
-
-
0030596063
-
How to derive protein folding potential? A new approach to an old problem
-
Mirny LA, Shakhnovich EI. 1996. How to derive protein folding potential? A new approach to an old problem. J Mol Biol 264:1164-1179.
-
(1996)
J Mol Biol
, vol.264
, pp. 1164-1179
-
-
Mirny, L.A.1
Shakhnovich, E.I.2
-
19
-
-
0029919190
-
Residue-residue potentials with a favorable contact pair term and an unfavorable high packing density term, for simulation and threading
-
Miyazawa S, Jernigan RL. 1996. Residue-residue potentials with a favorable contact pair term and an unfavorable high packing density term, for simulation and threading. J Mol Biol 256:623-644.
-
(1996)
J Mol Biol
, vol.256
, pp. 623-644
-
-
Miyazawa, S.1
Jernigan, R.L.2
-
20
-
-
0026009212
-
Prediction of protein backbone conformation based on 7 structure assignments: Influence of local interactions
-
Rooman MJ, Kocher JP, Wodak SJ. 1995. Prediction of protein backbone conformation based on 7 structure assignments: Influence of local interactions. J Mol Biol 221:961-979.
-
(1995)
J Mol Biol
, vol.221
, pp. 961-979
-
-
Rooman, M.J.1
Kocher, J.P.2
Wodak, S.J.3
-
21
-
-
0027441807
-
Step-wise mutation of barnase to binase. A procedure for engineering increased stability of proteins and an experimental analysis of the evolution of protein stability
-
Serrano L, Day AG, Fersht AR. 1993. Step-wise mutation of barnase to binase. A procedure for engineering increased stability of proteins and an experimental analysis of the evolution of protein stability. J Mol Biol 233:305-312.
-
(1993)
J Mol Biol
, vol.233
, pp. 305-312
-
-
Serrano, L.1
Day, A.G.2
Fersht, A.R.3
-
22
-
-
0027650879
-
Boltzmann's principle, knowledge-based mean fields and protein folding. An approach to the computational determination of protein structures
-
Sippl MJ. 1993. Boltzmann's principle, knowledge-based mean fields and protein folding. An approach to the computational determination of protein structures. J Comput Aided Mol Des 7:473-501.
-
(1993)
J Comput Aided Mol Des
, vol.7
, pp. 473-501
-
-
Sippl, M.J.1
-
23
-
-
0029000696
-
Knowledge-based potentials for proteins
-
Sippl MJ. 1995. Knowledge-based potentials for proteins. Curr Opin Struct Biol 5:229-235.
-
(1995)
Curr Opin Struct Biol
, vol.5
, pp. 229-235
-
-
Sippl, M.J.1
-
24
-
-
0030983768
-
Derivation and testing of pair potentials for protein folding. When is the quasichemical approximation correct?
-
Skolnick J, Jaroszewski L, Kolinski A, Godzik A. 1997. Derivation and testing of pair potentials for protein folding. When is the quasichemical approximation correct? Protein Sci 6:676-688.
-
(1997)
Protein Sci
, vol.6
, pp. 676-688
-
-
Skolnick, J.1
Jaroszewski, L.2
Kolinski, A.3
Godzik, A.4
-
25
-
-
0029976427
-
Statistical potentials extracted from protein structures: How accurate are they?
-
Thomas PD, Dill KA. 1996. Statistical potentials extracted from protein structures: How accurate are they? J Mol Biol 257:457-469.
-
(1996)
J Mol Biol
, vol.257
, pp. 457-469
-
-
Thomas, P.D.1
Dill, K.A.2
-
26
-
-
0017842051
-
Studies of protein folding, unfolding and fluctuations by computer simulations. II. A three dimensional lattice model of lysozyme
-
Ueda Y, Taketomi H, Go N. 1978. Studies of protein folding, unfolding and fluctuations by computer simulations. II. A three dimensional lattice model of lysozyme. Biopolymers 17:1351-1548.
-
(1978)
Biopolymers
, vol.17
, pp. 1351-1548
-
-
Ueda, Y.1
Taketomi, H.2
Go, N.3
-
28
-
-
0024435638
-
Computer model to dynamically simulate protein folding: Studies with crambin
-
Wilson C, Doniach S. 1989. Computer model to dynamically simulate protein folding: Studies with crambin. Proteins Struct Funct Genet 6:193-209.
-
(1989)
Proteins Struct Funct Genet
, vol.6
, pp. 193-209
-
-
Wilson, C.1
Doniach, S.2
|