-
2
-
-
0027650879
-
Boltzmann's principle, knowledge-based mean fields and protein folding: An approach to the computational determination of protein structures
-
Sippl, M.J. Boltzmann's principle, knowledge-based mean fields and protein folding: An approach to the computational determination of protein structures. J. Comp.-Aided Mol. Design 7:473-501, 1993.
-
(1993)
J. Comp.-Aided Mol. Design
, vol.7
, pp. 473-501
-
-
Sippl, M.J.1
-
5
-
-
0027490731
-
Recognition of Errors in three-dimensional structures of proteins
-
Sippl, M.J. Recognition of Errors in three-dimensional structures of proteins. Proteins 17:355-362, 1993.
-
(1993)
Proteins
, vol.17
, pp. 355-362
-
-
Sippl, M.J.1
-
6
-
-
0027302043
-
Prediction of protein structure by evaluation of sequence-structure fitness: Aligning sequences to contact profiles derived from 3D structures
-
Ouzounis, C., Sander, C., Scharf, M., Schneider, R. Prediction of protein structure by evaluation of sequence-structure fitness: Aligning sequences to contact profiles derived from 3D structures. J. Mol. Biol. 232:805-825, 1993.
-
(1993)
J. Mol. Biol.
, vol.232
, pp. 805-825
-
-
Ouzounis, C.1
Sander, C.2
Scharf, M.3
Schneider, R.4
-
7
-
-
0025830469
-
A method to identify protein sequences that fold into a known three-dimensional structure
-
Bowie, J.U., Lüthy, R., Eisenberg, D. A method to identify protein sequences that fold into a known three-dimensional structure. Science 253:164-170, 1991.
-
(1991)
Science
, vol.253
, pp. 164-170
-
-
Bowie, J.U.1
Lüthy, R.2
Eisenberg, D.3
-
8
-
-
0025319917
-
Conformations of folded proteins in restricted spaces
-
Covell, D.G., Jernigan, R.L. Conformations of folded proteins in restricted spaces. Biochemistry 29:3287-3294, 1990.
-
(1990)
Biochemistry
, vol.29
, pp. 3287-3294
-
-
Covell, D.G.1
Jernigan, R.L.2
-
9
-
-
0025608908
-
Simulations of the folding of a globular protein
-
Skolnick, J., Kolinski, A. Simulations of the folding of a globular protein. Science 250:1121-1125, 1990.
-
(1990)
Science
, vol.250
, pp. 1121-1125
-
-
Skolnick, J.1
Kolinski, A.2
-
10
-
-
0027500601
-
Folding proteins: Finding a needle in a haystack
-
Dill, K.A. Folding proteins: Finding a needle in a haystack. Curr. Opin. Struct. Biol. 3:99-103, 1993.
-
(1993)
Curr. Opin. Struct. Biol.
, vol.3
, pp. 99-103
-
-
Dill, K.A.1
-
11
-
-
0028203492
-
Monte Carlo simulations of protein folding. I. Lattice model and interaction scheme
-
Kolinski, A., Skolnick, J. Monte Carlo simulations of protein folding. I. Lattice model and interaction scheme. Proteins 18:338-352 (1994).
-
(1994)
Proteins
, vol.18
, pp. 338-352
-
-
Kolinski, A.1
Skolnick, J.2
-
12
-
-
0001222580
-
Lattice representations of globular proteins: How good are they?
-
Godzik, A., Kolinski, A., Skolnick, J. Lattice representations of globular proteins: How good are they? J. Comput. Chem. 14:1194-1202, 1993.
-
(1993)
J. Comput. Chem.
, vol.14
, pp. 1194-1202
-
-
Godzik, A.1
Kolinski, A.2
Skolnick, J.3
-
13
-
-
0016610491
-
Computer simulation of protein folding
-
Levitt, M., Warshel, A. Computer simulation of protein folding. Nature 253:694-698, 1975.
-
(1975)
Nature
, vol.253
, pp. 694-698
-
-
Levitt, M.1
Warshel, A.2
-
14
-
-
0017157584
-
A simplified representation of protein conformations for rapid simulation of protein folding
-
Levitt, M. A simplified representation of protein conformations for rapid simulation of protein folding. J. Mol. Biol. 104:59-107, 1976.
-
(1976)
J. Mol. Biol.
, vol.104
, pp. 59-107
-
-
Levitt, M.1
-
15
-
-
0017021957
-
Medium- and long-range interaction parameters between amino acids for predicting three-dimensional structures of proteins
-
Tanaka, S., Scheraga, H.A. Medium- and long-range interaction parameters between amino acids for predicting three-dimensional structures of proteins. Macromolecules 9:945-950, 1976.
-
(1976)
Macromolecules
, vol.9
, pp. 945-950
-
-
Tanaka, S.1
Scheraga, H.A.2
-
16
-
-
0017106907
-
Calculation of protein tertiary structure
-
Kuntz, I.D., Crippen, G.M., Kollman, P.A., Kimelman, D. Calculation of protein tertiary structure. J. Mol. Biol. 106:983-994, 1976.
-
(1976)
J. Mol. Biol.
, vol.106
, pp. 983-994
-
-
Kuntz, I.D.1
Crippen, G.M.2
Kollman, P.A.3
Kimelman, D.4
-
17
-
-
33845377127
-
Estimation of effective interresidue contact energies from protein crystal structures: Quasi-chemical approximation
-
Miyazawa, S., Jernigan, R.L. Estimation of effective interresidue contact energies from protein crystal structures: Quasi-chemical approximation. Macromolecules 18:534-552, 1985.
-
(1985)
Macromolecules
, vol.18
, pp. 534-552
-
-
Miyazawa, S.1
Jernigan, R.L.2
-
19
-
-
0025194253
-
A 1.8 Å resolution potential function for protein folding
-
Crippen, G.M., Snow, M.E. A 1.8 Å resolution potential function for protein folding. Biopolymers 29:1479-1489, 1990.
-
(1990)
Biopolymers
, vol.29
, pp. 1479-1489
-
-
Crippen, G.M.1
Snow, M.E.2
-
20
-
-
0026785519
-
Contact potential that recognizes the correct folding of globular proteins
-
Maiorov, V.N., Crippen, G.M. Contact potential that recognizes the correct folding of globular proteins. J. Mol. Biol. 227:876-888, 1992.
-
(1992)
J. Mol. Biol.
, vol.227
, pp. 876-888
-
-
Maiorov, V.N.1
Crippen, G.M.2
-
21
-
-
33646940952
-
Numerical integration of the cartesian equations of motion of a system with constraints: Molecular dynamics of n-alkanes
-
Ryckaert, J.P., Ciccotti, G., Berendsen, H.J.C. Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes. J. Comput. Phys. 23:327-341, 1977.
-
(1977)
J. Comput. Phys.
, vol.23
, pp. 327-341
-
-
Ryckaert, J.P.1
Ciccotti, G.2
Berendsen, H.J.C.3
-
23
-
-
0028205447
-
Enlarged representative set of protein structures
-
Hobohm, U., Sander, C. Enlarged representative set of protein structures. Prot. Sci. 3:522-524, 1994.
-
(1994)
Prot. Sci.
, vol.3
, pp. 522-524
-
-
Hobohm, U.1
Sander, C.2
-
24
-
-
0025851973
-
Prediction of protein folding from amino acid sequence over discrete conformation spaces
-
Crippen, G.M. Prediction of protein folding from amino acid sequence over discrete conformation spaces. Biochemistry 30:4232-4237, 1991.
-
(1991)
Biochemistry
, vol.30
, pp. 4232-4237
-
-
Crippen, G.M.1
-
25
-
-
0002804947
-
A potential function for protein folding
-
Seetharamulu, P., Crippen, G.M. A potential function for protein folding. J. Math. Chem. 6:91-110, 1991.
-
(1991)
J. Math. Chem.
, vol.6
, pp. 91-110
-
-
Seetharamulu, P.1
Crippen, G.M.2
-
26
-
-
0025294066
-
The sampling properties of some distance geometry algorithms applied to unconstrained polypeptide chains: A study of 1830 independently computed conformations
-
Havel, T.F. The sampling properties of some distance geometry algorithms applied to unconstrained polypeptide chains: A study of 1830 independently computed conformations. Biopolymers 29:1565-1585, 1990.
-
(1990)
Biopolymers
, vol.29
, pp. 1565-1585
-
-
Havel, T.F.1
-
27
-
-
0028012138
-
Significance of root-meansquare deviation in comparing three-dimensional structures of globular proteins
-
Maiorov, V.N., Crippen, G.M. Significance of root-meansquare deviation in comparing three-dimensional structures of globular proteins. J. Mol. Biol. 235:625-634, 1994.
-
(1994)
J. Mol. Biol.
, vol.235
, pp. 625-634
-
-
Maiorov, V.N.1
Crippen, G.M.2
-
28
-
-
33750587438
-
Molecular dynamics with coupling to an external bath
-
Berendsen, H.J.C., Postma, J.P.M., van Gunsteren, W.F., DiNola, A., Haak, J.R. Molecular dynamics with coupling to an external bath. J. Chem. Phys. 81:3684-3670, 1984.
-
(1984)
J. Chem. Phys.
, vol.81
, pp. 3684-13670
-
-
Berendsen, H.J.C.1
Postma, J.P.M.2
Van Gunsteren, W.F.3
DiNola, A.4
Haak, J.R.5
-
29
-
-
0028947257
-
Funnels, pathways, and the energy landscape of protein folding: A synthesis
-
Bryngelson, J.D., Onuchic, J.N., Socci, N.D., Wolynes, P.G. Funnels, pathways, and the energy landscape of protein folding: A synthesis. Proteins 21:167-195, 1995.
-
(1995)
Proteins
, vol.21
, pp. 167-195
-
-
Bryngelson, J.D.1
Onuchic, J.N.2
Socci, N.D.3
Wolynes, P.G.4
-
30
-
-
0026610767
-
Assessment of protein models with three-dimensional profiles
-
Lüthy, R., Bowie, J.U., Eisenberg, D. Assessment of protein models with three-dimensional profiles. Nature 356:83-85, 1992.
-
(1992)
Nature
, vol.356
, pp. 83-85
-
-
Lüthy, R.1
Bowie, J.U.2
Eisenberg, D.3
-
31
-
-
0028318094
-
Factors influencing the ability of knowledge-based potentials to identify native sequence-structure matches
-
Kocher, J.-P.A., Rooman, M.J., Wodak, S.J. Factors influencing the ability of knowledge-based potentials to identify native sequence-structure matches. J. Mol. Biol. 235:1598-1613.
-
J. Mol. Biol.
, vol.235
, pp. 1598-1613
-
-
Kocher, J.-P.A.1
Rooman, M.J.2
Wodak, S.J.3
-
32
-
-
0024435638
-
A computer model to dynamically simulate protein folding: Studies with crambin
-
Wilson, C., Doniach, S. A computer model to dynamically simulate protein folding: Studies with crambin. Proteins 6:193-209, 1989.
-
(1989)
Proteins
, vol.6
, pp. 193-209
-
-
Wilson, C.1
Doniach, S.2
-
33
-
-
0028304890
-
Recognition of distantly related proteins through energy calculations
-
Abagyan, R., Frishman, D., Argos, P. Recognition of distantly related proteins through energy calculations. Proteins 19:132-140, 1994.
-
(1994)
Proteins
, vol.19
, pp. 132-140
-
-
Abagyan, R.1
Frishman, D.2
Argos, P.3
-
34
-
-
0025341237
-
Identification of protein folds: Matching hydrophobicity patterns of sequence sets with solvent accessibility patterns of known structures
-
Bowie, J.U., Clarke, N.D., Pabo, C.O., Sauer, R.T. Identification of protein folds: Matching hydrophobicity patterns of sequence sets with solvent accessibility patterns of known structures. Proteins 7:257-264, 1990.
-
(1990)
Proteins
, vol.7
, pp. 257-264
-
-
Bowie, J.U.1
Clarke, N.D.2
Pabo, C.O.3
Sauer, R.T.4
-
35
-
-
0028841399
-
A simple protein folding algorithm using a binary code and secondary structure constraints
-
Sun, S., Thomas, P.D., Dill, K.A. A simple protein folding algorithm using a binary code and secondary structure constraints. Prot. Eng. 8:769-778, 1995.
-
(1995)
Prot. Eng.
, vol.8
, pp. 769-778
-
-
Sun, S.1
Thomas, P.D.2
Dill, K.A.3
-
36
-
-
0029055313
-
LINUS: A hierarchic procedure to predict the fold of a protein
-
Srinivasan, R., Rose, G.D. LINUS: A hierarchic procedure to predict the fold of a protein. Proteins 22:81-99, 1995.
-
(1995)
Proteins
, vol.22
, pp. 81-99
-
-
Srinivasan, R.1
Rose, G.D.2
-
37
-
-
0029101826
-
Recognizing native folds by the arrangement of hydrophobic and polar residues
-
Huang, E.S., Subbiah, S., Levitt, M. Recognizing native folds by the arrangement of hydrophobic and polar residues. J. Mol. Biol. 252:709-720, 1995.
-
(1995)
J. Mol. Biol.
, vol.252
, pp. 709-720
-
-
Huang, E.S.1
Subbiah, S.2
Levitt, M.3
|