Genomic mismatch scanning identifies human genomic DNA shared identical by descent

Genomics

Volumn 47, Issue 1, 1998, Pages 1-6

  Cheung, Vivian G ^a   Nelson, Stanley F ^b  

^a UNIVERSITY OF PENNSYLVANIA   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; HETERODUPLEX;

ARTICLE; BASE MISPAIRING; GENE MAPPING; GENOME; GENOMIC MISMATCH SCANNING; GENOTYPE; HUMAN; PRIORITY JOURNAL; RESTRICTION FRAGMENT; SEQUENCE HOMOLOGY;

ESCHERICHIA COLI;

EID: 0031913116     PISSN: 08887543     EISSN: None     Source Type: Journal    
DOI: 10.1006/geno.1997.5082     Document Type: Article

References (21)

1. Au K. G., Welsh K., Modrich P. Initiation of methyl-directed mismatch repair. J. Biol. Chem. 267:1992;12142-12148.
2. Bowcock A., Cavalli-Sforza L. The study of variation in the human genome. Genomics. 11:1991;491-498.
3. Casna N., Novack D., Hsu M., Ford D. Genomic analysis II, isolation of high molecular weight heteroduplex DNA following differential methylase protection and formamide PERT hybridization. Nucleic Acids Res. 14:1986;7285-7303.
4. Cheung V. G., Nelson S. F. Whole genome amplification using a degenerate oligonucleotide primer allows hundreds of genotypes to be performed on less than one nanogram of genomic DNA. Proc. Natl. Acad. Sci. USA. 93:1996a;14676-14679.
5. Cheung V. G., Nelson S. F. Genomic mismatch scanning: An identity-by-descent physical mapping technique in human. Am. J. Hum. Genet. 59:1996b;A1740.
6. Cooper D. N., Smith B. A., Cooke H. J., Niemann S., Schmidte J. An estimate of unique DNA sequence heterozygosity in the human genome. Hum. Genet. 69:1985;201-205.
7. Henikoff S. Unidirectional digestion with exonuclease III creates targeted breakpoints for DNA sequencing. Gene. 28:1984;351-360.
8. Kallioniemi A. Comparative genomic hybridization for molecular cytogenetic analysis of solid tumors. Science. 258:1992;818-821.
9. Learn, B. A. Grafstrom, R. H. 1989, Methyl-directed repair of frameshift heteroduplexes in cell extracts fromEscherichia coli. J. Bacteriol., 171, 6473, 6481.
10. Li W. H., Sadler L. A. Low nucleotide diversity in man. Genetics. 129:1991;513-523.
11. McAllister L., Penland L., DeRisi J., Brown P. O. Application of genomic mismatch scanning to mammalian genomes. Am. J. Hum. Genet. 59:1996;A303.
12. Mirzayans F., Mears A. J., Guo S. W., Pearce W. G., Walter M. A. Identification of the human chromosomal region containing the iridogoniodysgenesis anomaly locus by genomic-mismatch scanning. Am. J. Hum. Genet. 61:1997;111-119.
13. Nelson D. L., Ledbetter S. A., Corbo L., Victoria M. F., Ramirez-Solis R., Webster T. D., Ledbetter D. H., Caskey C. T. Alu polymerase chain reaction: A method for rapid isolation of human-specific sequences from complex DNA sources. Proc. Natl. Acad. Sci. USA. 86:1989;6686-6690.
14. Nelson S. F., McCusker J. H., Sander M. A., Kee Y., Modrich P., Brown P. O. Genomic mismatch scanning, a new approach to genetic linkage mapping. Nat. Genet. 4:1993;11-18.
15. Pertl B. Rapid detection of trisomies 21 and 18 and sexing by quantitative fluorescent multiplex PCR. Hum. Genet. 98:1996;55-59.
16. Risch N., Merikangas K. The future of genetic studies of complex human diseases. Science. 273:1996;1516-1517.
17. Sedat J. W., Kelly R. B., Sinsheimer R. L. Fractionation of nucleic acid on benzoylated-naphthoylated DEAE cellulose. J. Mol. Biol. 26:1967;537-540.
18. Shalon D., Smith S. J., Brown P. O. A DNA microarray system for analyzing complex DNA samples using two-color fluorescent probe hybridization. Genome Res. 6:1996;639-645.
19. Smith J., Modrich P. Mutation detection with MutH, MutL, and MutS mismatch repair proteins. Proc. Natl. Acad. Sci. USA. 93:1996;4374-4379.
20. Su S., Lahue R. S., Au K. G., Modrich P. Mispair specificity of methyl-directed DNA mismatch correction in vitro. J. Biol. Chem. 263:1988;6829-6835.
21. Su S. S., Modrich P. E. coli. Proc. Natl. Acad. Sci. USA. 83:1986;5057-5061.