Multiple developmental requirements of noisette, the Drosophila homolog of the U2 snRNP-associated polypeptide SF3a60

Molecular and Cellular Biology

Volumn 18, Issue 4, 1998, Pages 1835-1843

  Meyer, Valérie ^a   Oliver, Brian ^a,b   Pauli, Daniel ^a  

^a UNIVERSITY OF GENEVA   (Switzerland)

^b NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

SMALL NUCLEAR RIBONUCLEOPROTEIN;

ANIMAL CELL; ARTICLE; CELL FRACTIONATION; CELLULAR DISTRIBUTION; CONTROLLED STUDY; DROSOPHILA MELANOGASTER; EMBRYO DEVELOPMENT; FEMALE STERILITY; GENE EXPRESSION; GENE ISOLATION; GENE MUTATION; MOLECULAR CLONING; NONHUMAN; PRIORITY JOURNAL; PROTEIN EXPRESSION; SACCHAROMYCES CEREVISIAE; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SPLICEOSOME;

ANIMALIA; DROSOPHILA MELANOGASTER; HEXAPODA; MELANOGASTER; SACCHAROMYCES CEREVISIAE;

EID: 0031899362     PISSN: 02707306     EISSN: None     Source Type: Journal    
DOI: 10.1128/MCB.18.4.1835     Document Type: Article

References (69)

1. Adams, M. D., R. S. Tarng, and D. C. Rio. 1997. The alternative splicing factor PSI regulates P-element third intron splicing in vivo. Genes Dev. 11:129-138.
2. Albrecht, E. B., and H. K. Salz. 1993. The Drosophila sex determination gene snf is utilized for the establishment of the female-specific splicing pattern of Sex-lethal. Genetics 134:801-807.
3. Baker, B. S. 1989. Sex in flies: the splice of life. Nature (London) 340:521-524.
4. Behrens, S. E., F. Galisson, P. Legrain, and R. Lührmann. 1993. Evidence that the 60-kDa protein of 17S U2 small nuclear ribonucleoprotein is immunologically and functionally related to the yeast PRP9 splicing factor and is required for the efficient formation of prespliceosomes. Proc. Natl. Acad. Sci. USA 90:8229-8233.
5. Bender, W., P. Spierer, and D. S. Hogness. 1983. Chromosomal walking and jumping to isolate DNA from the Ace and rosy loci and the bithorax complex in Drosophila melanogaster. J. Mol. Biol. 168:17-33.
6. Bennett, M., S. Michaud, J. Kingston, and R. Reed. 1992. Protein components specifically associated with prespliceosome and spliceosome complexes. Genes Dev. 6:1986-2000.
7. Bennett, M., and R. Reed. 1993. Correspondence between a mammalian spliceosome component and an essential yeast splicing factor. Science 262: 105-108.
8. Bier, E., H. Vaessin, S. Shepherd, K. Lee, K. McCall, S. Barbel, L. Ackerman, R. Carretto, T. Uemura, E. Grell, L. Y. Jan, and Y. N. Jan. 1989. Searching for pattern and mutation in the Drosophila genome with a P-lacZ vector. Genes Dev. 3:1273-1287.
9. Brosi, R., K. Gröning, S. E. Behrens, R. Lührmann, and A. Krämer. 1993. Interaction of mammalian splicing factor SF3a with U2 snRNP and relation of its 60-kD subunit to yeast PRP9. Science 262:102-105.
10. Brosi, R., H. P. Hauri, and A. Krämer. 1993. Separation of splicing factor SF3 into two components and purification of SF3a activity. J. Biol. Chem. 268:17640-17646.
11. Brown, N. H., and F. C. Kafatos. 1988. Functional cDNA libraries from Drosophila embryos. J. Mol. Biol. 203:425-437.
12. Champlin, D. T., M. Frasch, H. Saumweber, and J. T. Lis. 1991. Characterization of a Drosophila protein associated with boundaries of transcriptionally active chromatin. Genes Dev. 5:1611-1621.
13. Chiara, M. D., P. Champion-Arnaud, M. Buvoli, B. Nadal-Ginard, and R. Reed. 1994. Specific protein-protein interactions between the essential mammalian spliceosome-associated proteins SAP 61 and SAP 114. Proc. Natl. Acad. Sci. USA 91:6403-6407.
14. Cléard, F., M. Matsarskaia, and P. Spierer. 1995. The modifier of position-effect variegation Suvar(3)7 of Drosophila: there are two alternative transcripts and seven scattered zinc fingers, each preceded by a tryptophan box. Nucleic Acids Res. 23:796-802.
15. Cline, T. W., and B. J. Meyer. 1996. Vive la difference: males vs females in flies vs worms. Annu. Rev. Genet. 30:637-702.
16. Denhez, F., and R. Lafyatis. 1994. Conservation of regulated alternative splicing and identification of functional domains in vertebrate homologs to the Drosophila splicing regulator, suppressor-of-white-apricot. J. Biol. Chem. 269:16170-16179.
17. Flickinger, T. W., and H. K. Salz. 1994. The Drosophila sex determination gene snf encodes a nuclear protein with sequence and functional similarity to the mammalian U1A snRNP protein. Genes Dev. 8:914-925.
18. Fridell, R. A., and L. L. Searles. 1994. Evidence for a role of the Drosophila melanogaster suppressor of sable gene in the pre-mRNA splicing pathway. Mol. Cell. Biol. 14:859-867.
19. Fu, X. D. 1995. The superfamily of arginine/serine-rich splicing factors. RNA 1:663-680.
20. Geyer, P. K., A. J. Chien, V. G. Corces, and M. M. Green. 1991. Mutations in the su(s) gene affect RNA processing in Drosophila melanogaster. Proc. Nail. Acad. Sci. USA 88:7116-7120.
21. Gönczy, P., S. Viswanathan, and S. DiNardo. 1992. Probing spermatogenesis in Drosophila with P-element enhancer detectors. Development 114:89-98.
22. Gozani, O., R. Feld, and R. Reed. 1996. Evidence that sequence-independent binding of highly conserved U2 snRNP proteins upstream of the branch site is required for assembly of spliceosomal complex A. Genes Dev. 10:233-243.
23. Hammond, L. E., D. Z. Rudner, R. Kanaar, and D. C. Rio. 1997. Mutations in the hrp48 gene, which encodes a Drosophila heterogeneous nuclear ribonucleoprotein particle protein, cause lethality and developmental defects and affect P-element third-intron splicing in vivo. Mol. Cell. Biol. 17:7260-7267.
24. Harper, D. S., L. D. Fresco, and J. D. Keene. 1992. RNA binding specificity of a Drosophila snRNP protein that shares sequence homology with mammalian U1-A and U2-B″ proteins. Nucleic Acids Res. 20:3645-3650.
25. Heinrichs, V., and B. S. Baker. 1995. The Drosophila SR protein RBP1 contributes to the regulation of doublesex alternative splicing by recognizing RBP1 RNA target sequences. EMBO J. 14:3987-4000.
26. Kanaar, R., S. E. Roche, E. L. Beall, M. R. Green, and D. C. Rio. 1993. The conserved pre-mRNA splicing factor U2AF from Drosophila: requirement for viability. Science 262:569-573.
27. Keyes, L. N., and A. C. Spradling. 1997. The Drosophila gene fs(2)cup interacts with otu to define a cytoplasmic pathway required for the structure and function of germ-line chromosomes. Development 124:1419-1431.
28. Kim, Y. J., P. Zuo, J. L. Manley, and B. S. Baker. 1992. The Drosophila RNA-binding protein RBP1 is localized to transcriptionally active sites of chromosomes and shows a functional similarity to human splicing factor ASF/SF2. Genes Dev. 6:2569-2579.
29. King, R. C. 1970. Ovarian development in Drosophila melanogaster. Academic Press, New York, N.Y.
30. Krämer, A. 1996. The structure and function of proteins involved in mammalian pre-mRNA splicing. Annu. Rev. Biochem. 65:367-409.
31. Krämer, A., and V. Utans. 1991. Three protein factors (SF1, SF3 and U2AF) function in pre-splicing complex formation in addition to snRNPs. EMBO J. 10:1503-1509.
32. Krämer, A., P. Legrain, F. Mulhauser, K. Gröning, R. Brosi, and G. Bilbe. 1994. Splicing factor SF3a60 is the mammalian homologue of PRP9 of S. cerevisiae: the conserved zinc finger-like motif is functionally exchangeable in vivo. Nucleic Acids Res. 22:5223-5228.
33. Krämer, A., F. Mulhauser, C. Wersig, K. Gröning, and G. Bilbe. 1995. Mammalian splicing factor SF3a120 represents a new member of the SURP family of proteins and is homologous to the essential splicing factor PRP21p of Saccharomyces cerevisiae. RNA 1:260-272.
34. Kraus, M. E., and J. T. Lis. 1994. The concentration of B52, an essential splicing factor and regulator of splice site choice in vitro, is critical for Drosophila development. Mol. Cell. Biol. 14:5360-5370.
35. Lasko, P. F., and M. Ashburner. 1990. Posterior localization of vasa protein correlates with, but is not sufficient for, pole cell development. Genes Dev. 4:905-921.
36. Legrain, P., and C. Chapon. 1993. Interaction between PRP11 and SPP91 yeast splicing factors and characterization of a PRP9-PRP11-SPP91 complex. Science 262:108-110.
37. Legrain, P., and A. Choulika. 1990. The molecular characterization of PRP6 and PRP9 yeast genes reveals a new cysteine/histidine motif common to several splicing factors. EMBO J. 9:2775-2781.
38. Legrain, P., C. Chapon, and F. Galisson. 1993. Interactions between PRP9 and SPP91 splicing factors identify a protein complex required in prespliceosome assembly. Genes Dev. 7:1390-1399.
39. Mancebo, R., P. C. H. Lo, and S. M. Mount. 1990. Structure and expression of the Drosophila melanogaster gene for the U1 small nuclear ribonucleoprotein particle 70K protein. Mol. Cell. Biol. 10:2492-2502.
40. Maniatis, T., R. C. Hardison, E. Lacy, J. Lauer, C. O'Connell, D. Quon, G. K. Sim, and A. Efstratiadis. 1978. The isolation of structural genes from libraries of eucaryotic DNA. Cell 15:687-701.
41. Murray, M. V., M. A. Turnage, K. J. Williamson, W. R. Steinhauer, and L. L. Searles. 1997. The Drosophila Suppressor of sable protein binds to RNA and associates with a subset of polytene chromosome bands. Mol. Cell. Biol. 17:2291-2300.
42. Oliver, B., N. Perrimon, and A. P. Mahowald. 1988. Genetic evidence that the sans fille locus is involved in Drosophila sex determination. Genetics 120:159-171.
43. Pascolo, E., and B. Séraphin. 1997. The branchpoint residue is recognized during commitment complex formation before being bulged out of the U2 snRNA-pre-mRNA duplex. Mol. Cell. Biol. 17:3469-3476.
44. Pauli, D., C.-H. Tonka, A. Tissières, and A.-P. Arrigo. 1990. Tissue-specific expression of the heat shock protein HSP27 during Drosophila melanogaster development. J. Cell Biol. 111:817-828.
45. Peng, X., and S. M. Mount. 1995. Genetic enhancement of RNA-processing defects by a dominant mutation in B52, the Drosophila gene for an SR protein splicing factor. Mol. Cell. Biol. 15:6273-6282.
46. Pennetta, G., and D. Pauli. 1997. stand still, a Drosophila gene involved in the female germline for proper survival, sex determination and differentiation. Genetics 145:975-987.
47. Pirrotta, V. 1988. Vectors for P-mediated transformation in Drosophila, p. 437-456. In R. L. Rodriguez and D. T. Denhardt (ed.), Vectors: a survey of molecular cloning vectors and their uses. Butterworths, Boston, Mass.
48. Polycarpou-Schwarz, M., S. I. Gunderson, S. Kandels-Lewis, B. Seraphin, and I. W. Mattaj. 1996. Drosophila SNF/D25 combines the functions of the two snRNP proteins U1A and U2B″ that are encoded separately in human, potato, and yeast. RNA 2:11-23.
49. Ring, H. Z., and J. T. Lis. 1994. The SR protein B52/SRp55 is essential for Drosophila development. Mol. Cell. Biol. 14:7499-7506.
50. Robertson, H. M., C. R. Preston, R. W. Phillis, D. M. Johnson-Schlitz, W. K. Benz, and W. R. Engels. 1988. A stable genomic source of P element transposase in Drosophila melanogaster. Genetics 118:461-470.
51. Roth, M. B., A. M. Zahler, and J. A. Stolk. 1991. A conserved family of nuclear phosphoproteins localized to sites of polymerase II transcription. J. Cell Biol. 115:587-596.
52. Rubin, G. M., and A. C. Spradling. 1983. Vectors for P element-mediated gene transfer in Drosophila. Nucleic Acids Res. 11:6341-6351.
53. Ruby, S. W., T. H. Chang, and J. Abelson. 1993. Four yeast spliceosomal proteins (PRP5, PRP9, PRP11, and PRP21) interact to promote U2 snRNP binding to pre-mRNA. Genes Dev. 7:1909-1925.
54. Rudner, D. Z., R. Kanaar, K. S. Breger, and D. C. Rio. 1996. Mutations in the small subunit of the Drosophila U2AF splicing factor cause lethality and developmental defects. Proc. Natl. Acad. Sci. USA 93:10333-10337.
55. Salz, H. K. 1992. The genetic analysis of snf: a Drosophila sex determination gene required for activation of Sex-lethal in both the germline and the soma. Genetics 130:547-554.
56. Salz, H. K., and T. W. Flickinger. 1996. Both loss-of-function and gain-of-function mutations in snf define a role for snRNP proteins in regulating Sex-lethal pre-mRNA splicing in Drosophila development. Genetics 144:95-108.
57. Sarkissian, M., A. Winne, and R. Lafyatis. 1996. The mammalian homolog of suppressor-of-white-apricot regulates alternative mRNA splicing of CD45 exon 4 and fibronectin IIICS. J. Biol. Chem. 271:31106-31114.
58. Schmidt, E. E., and U. Schibler. 1995. High accumulation of components of the RNA polymerase II transcription machinery in rodent spermatids. Development 121:2373-2383.
59. Schmidt, E. E., and U. Schibler. 1997. Developmental testis-specific regulation of mRNA levels and mRNA translational efficiencies for TATA-binding protein mRNA isoforms. Dev. Biol. 184:138-149.
60. Siebel, C. W., A. Admon, and D. C. Rio. 1995. Soma-specific expression and cloning of PSI, a negative regulator of P element pre-mRNA splicing. Genes Dev. 9:269-283.
61. Smith, J. L., J. E. Wilson, and P. M. Macdonald. 1992. Overexpression of oskar directs ectopic activation of nanos and presumptive pole cell formation in Drosophila embryos. Cell 70:849-859.
62. Staknis, D., and R. Reed. 1994. Direct interactions between pre-mRNA and six U2 small nuclear ribonucleoproteins during spliceosome assembly. Mol. Cell. Biol. 14:2994-3005.
63. Steinmann-Zwicky, M. 1988. Sex determination in Drosophila: the X-chromosomal gene liz is required for Sxl activity. EMBO J. 7:3889-3898.
64. Stroumbakis, N. D., Z. Li, and P. P. Tolias. 1994. RNA- and single-stranded DNA-binding (SSB) proteins expressed during Drosophila melanogaster oogenesis: a homolog of bacterial and eukaryotic mitochondrial SSBs. Gene 143:171-177.
65. Sun, J. S., and J. L. Manley. 1995. A novel U2-U6 snRNA structure is necessary for mammalian mRNA splicing. Genes Dev. 9:843-854.
66. Valcárcel, J., and M. R. Green. 1996. The SR protein family: pleiotropic functions in pre-mRNA splicing. Trends Biochem. Sci. 21:296-301.
67. Wells, S. E., and M. Ares, Jr. 1994. Interactions between highly conserved U2 small nuclear RNA structures and Prp5p, Prp9p, Prp11p, and Prp21p proteins are required to ensure integrity of the U2 small nuclear ribonucleoprotein in Saccharomyces cerevisiae. Mol. Cell. Biol. 14:6337-6349.
68. Yan, D., and M. Ares, Jr. 1996. Invariant U2 RNA sequences bordering the branchpoint recognition region are essential for interaction with yeast SF3a and SF3b subunits. Mol. Cell. Biol. 16:818-828.
69. Zachar, Z., T. B. Chou, J. Kramer, I. P. Mims, and P. M. Bingham. 1994. Analysis of autoregulation at the level of pre-mRNA splicing of the suppressor-of-white-apricot gene in Drosophila. Genetics 137:139-150.