메뉴 건너뛰기




Volumn 4, Issue 8, 1998, Pages 937-947

Identification by modification-interference of purine N-7 and ribose 2'- OH groups critical for catalysis by bacterial ribonuclease P

Author keywords

Nucleoside triphosphate analogues; Phosphorothioate; Ribozyme; RNA structure; tRNA processing

Indexed keywords

BACTERIAL ENZYME; NUCLEOSIDE TRIPHOSPHATE; PHOSPHOROTHIOIC ACID; RIBONUCLEASE P; RIBOZYME;

EID: 0031827292     PISSN: 13558382     EISSN: None     Source Type: Journal    
DOI: 10.1017/S1355838298980384     Document Type: Article
Times cited : (45)

References (37)
  • 2
    • 0344446244 scopus 로고
    • Improved synthesis of deoxynucleoside 5′-O-monothiophosphates and 5′-O-(1-thio) triphosphates
    • Bogachev VS. 1987. Improved synthesis of deoxynucleoside 5′-O-monothiophosphates and 5′-O-(1-thio) triphosphates. Bioorganicheskaya Khimija 13:1683-1686.
    • (1987) Bioorganicheskaya Khimija , vol.13 , pp. 1683-1686
    • Bogachev, V.S.1
  • 3
    • 0025129447 scopus 로고
    • Mapping the active site of ribonuclease P RNA using a substrate containing a photoaffinity agent
    • Burgin AB, Pace NR. 1990. Mapping the active site of ribonuclease P RNA using a substrate containing a photoaffinity agent. EMBO J 9:4111-4118.
    • (1990) EMBO J , vol.9 , pp. 4111-4118
    • Burgin, A.B.1    Pace, N.R.2
  • 4
    • 0030587890 scopus 로고    scopus 로고
    • Metal-binding sites in the major groove of a large ribozyme domain
    • Cate JH, Doudna JA. 1996. Metal-binding sites in the major groove of a large ribozyme domain. Structure 4:1221-1229.
    • (1996) Structure , vol.4 , pp. 1221-1229
    • Cate, J.H.1    Doudna, J.A.2
  • 6
    • 0030929889 scopus 로고    scopus 로고
    • Magnesium ion core at the heart of a ribozyme domain
    • Cate JH, Hanna RL, Doudna JA. 1997. Magnesium ion core at the heart of a ribozyme domain. Nature Struct Biol 4:553-558.
    • (1997) Nature Struct Biol , vol.4 , pp. 553-558
    • Cate, J.H.1    Hanna, R.L.2    Doudna, J.A.3
  • 7
    • 0032473358 scopus 로고    scopus 로고
    • Comparative photocrosslinking analysis of the tertiary structures of Escherichia coli and Bacillus subtilis RNase P RNAs
    • Forthcoming
    • Chen JL, Nolan JM, Harris ME, Pace NR. 1998. Comparative photocrosslinking analysis of the tertiary structures of Escherichia coli and Bacillus subtilis RNase P RNAs. EMBO J. Forthcoming.
    • (1998) EMBO J.
    • Chen, J.L.1    Nolan, J.M.2    Harris, M.E.3    Pace, N.R.4
  • 8
    • 0031156668 scopus 로고    scopus 로고
    • Identification of the universally conserved core of ribonuclease P RNA
    • Chen JL, Pace NR. 1997. Identification of the universally conserved core of ribonuclease P RNA. RNA 3:557-560.
    • (1997) RNA , vol.3 , pp. 557-560
    • Chen, J.L.1    Pace, N.R.2
  • 9
    • 0027049570 scopus 로고
    • Analysis of the role of phosphate oxygens in the group I intron from Tetrahymena
    • Christian EC, Yarus M. 1992. Analysis of the role of phosphate oxygens in the group I intron from Tetrahymena. J Mol Biol 228:743-758.
    • (1992) J Mol Biol , vol.228 , pp. 743-758
    • Christian, E.C.1    Yarus, M.2
  • 10
    • 0029017988 scopus 로고
    • Enzymatic synthesis of 2′-modified nucleic acids: Identification of important phosphate and ribose moieties in RNase P substrates
    • Conrad F, Hanne A, Gaur K, Krupp G. 1995. Enzymatic synthesis of 2′-modified nucleic acids: Identification of important phosphate and ribose moieties in RNase P substrates. Nucleic Acids Res 23:1845-1853.
    • (1995) Nucleic Acids Res , vol.23 , pp. 1845-1853
    • Conrad, F.1    Hanne, A.2    Gaur, K.3    Krupp, G.4
  • 11
    • 0344014931 scopus 로고
    • Modification-interference analysis of reactions using RNA substrates
    • Dahlberg JE, Abelson JN, eds. San Diego: Academic Press, Inc.
    • Conway L, Wickens M. 1989. Modification-interference analysis of reactions using RNA substrates. In: Dahlberg JE, Abelson JN, eds. RNA processing. San Diego: Academic Press, Inc. p 600.
    • (1989) RNA Processing , pp. 600
    • Conway, L.1    Wickens, M.2
  • 12
    • 0021891882 scopus 로고
    • Nucleoside phosphorothioates
    • Eckstein F. 1985. Nucleoside phosphorothioates. Annu Rev Biochem 54:367-402.
    • (1985) Annu Rev Biochem , vol.54 , pp. 367-402
    • Eckstein, F.1
  • 13
    • 0028022739 scopus 로고
    • Rational design of self-cleaving pre-tRNA ribonuclease P RNA conjugates
    • Frank DN, Harris ME, Pace NR. 1994. Rational design of self-cleaving pre-tRNA ribonuclease P RNA conjugates. Biochemistry 33:10800-10808.
    • (1994) Biochemistry , vol.33 , pp. 10800-10808
    • Frank, D.N.1    Harris, M.E.2    Pace, N.R.3
  • 14
    • 0031475158 scopus 로고    scopus 로고
    • In vitro selection for altered divalent metal specificity in the ribonuclease P ribozyme
    • Frank DN, Pace NR. 1998. In vitro selection for altered divalent metal specificity in the ribonuclease P ribozyme. Proc Natl Acad Sci USA 94:14355-14360.
    • (1998) Proc Natl Acad Sci USA , vol.94 , pp. 14355-14360
    • Frank, D.N.1    Pace, N.R.2
  • 15
    • 0027295270 scopus 로고
    • Modification-interference approach to detect ribose moieties important for the optimal activity of a ribozyme
    • Gaur RK, Krupp G. 1993. Modification-interference approach to detect ribose moieties important for the optimal activity of a ribozyme. Nucleic Acids Res 21:21-26.
    • (1993) Nucleic Acids Res , vol.21 , pp. 21-26
    • Gaur, R.K.1    Krupp, G.2
  • 16
    • 0024283277 scopus 로고
    • DNA and RNA sequence determination based on phosphorothioate chemistry
    • Gish G, Eckstein F. 1988. DNA and RNA sequence determination based on phosphorothioate chemistry. Science 24:1520-1522.
    • (1988) Science , vol.24 , pp. 1520-1522
    • Gish, G.1    Eckstein, F.2
  • 17
    • 0003893996 scopus 로고
    • RNA-protein interactions in RNase P
    • Nagai K, Mattaj IW, eds. New York: Oxford University Press
    • Gopalan V, Talbot SJ, Altman S. 1994. RNA-protein interactions in RNase P. In: Nagai K, Mattaj IW, eds. RNA-protein interactions. New York: Oxford University Press, pp 103-126.
    • (1994) RNA-protein Interactions , pp. 103-126
    • Gopalan, V.1    Talbot, S.J.2    Altman, S.3
  • 18
    • 0023665603 scopus 로고
    • Stereospecificity of nucleases towards phosphorothioate-substituted RNA: Stereochemistry of transcription by T7 RNA polymerase
    • Griffiths AD, Potter BV, Eperon IC. 1987. Stereospecificity of nucleases towards phosphorothioate-substituted RNA: Stereochemistry of transcription by T7 RNA polymerase. Nucleic Acids Res 15:4145-4162.
    • (1987) Nucleic Acids Res , vol.15 , pp. 4145-4162
    • Griffiths, A.D.1    Potter, B.V.2    Eperon, I.C.3
  • 19
    • 0021013526 scopus 로고
    • The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme
    • Guerrier-Takada C, Gardiner K, Marsh T, Pace N, Altman S. 1983. The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme. Cell 35:849-857.
    • (1983) Cell , vol.35 , pp. 849-857
    • Guerrier-Takada, C.1    Gardiner, K.2    Marsh, T.3    Pace, N.4    Altman, S.5
  • 20
    • 0022530665 scopus 로고
    • Metal ion requirements and other aspects of the reaction catalyzed by M1 RNA, the RNA subunit of ribonuclease P from Escherichia coli
    • Guerrier-Takada C, Haydock K, Allen L, Altman S. 1986. Metal ion requirements and other aspects of the reaction catalyzed by M1 RNA, the RNA subunit of ribonuclease P from Escherichia coli. Biochemistry 25:1509-1515.
    • (1986) Biochemistry , vol.25 , pp. 1509-1515
    • Guerrier-Takada, C.1    Haydock, K.2    Allen, L.3    Altman, S.4
  • 21
    • 0029905957 scopus 로고    scopus 로고
    • Rp-deoxy-phosphorothioate modification-interference experiments identify 2′-OH groups in RNase P RNA that are crucial to tRNA binding
    • Hardt WD, Erdmann VA, Hartmann RK. 1996. Rp-deoxy-phosphorothioate modification-interference experiments identify 2′-OH groups in RNase P RNA that are crucial to tRNA binding. RNA 2:1189-1198.
    • (1996) RNA , vol.2 , pp. 1189-1198
    • Hardt, W.D.1    Erdmann, V.A.2    Hartmann, R.K.3
  • 22
    • 0029018021 scopus 로고
    • Rp-phosphorothioate modifications in RNase P RNA that interfere with tRNA binding
    • Hardt WD, Warnecke JM, Erdmann VA, Hartmann RK. 1995. Rp-phosphorothioate modifications in RNase P RNA that interfere with tRNA binding. EMBO J 14:2935-2944.
    • (1995) EMBO J , vol.14 , pp. 2935-2944
    • Hardt, W.D.1    Warnecke, J.M.2    Erdmann, V.A.3    Hartmann, R.K.4
  • 23
    • 0004194908 scopus 로고    scopus 로고
    • Structure and catalytic function of the bacterial ribonuclease P ribozyme
    • Simons RW, Grunberg-Manago M, eds. Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press
    • Harris ME, Frank DN, Pace NR. 1998. Structure and catalytic function of the bacterial ribonuclease P ribozyme. In: Simons RW, Grunberg-Manago M, eds. RNA structure and function. Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press, pp 309-337.
    • (1998) RNA Structure and Function , pp. 309-337
    • Harris, M.E.1    Frank, D.N.2    Pace, N.R.3
  • 24
    • 0031010235 scopus 로고    scopus 로고
    • Analysis of the tertiary structure of the ribonuclease P ribozyme-substrate complex by site-specific photoaffinity crosslinking
    • Harris ME, Kazantsev AV, Chen JL, Pace NR. 1997. Analysis of the tertiary structure of the ribonuclease P ribozyme-substrate complex by site-specific photoaffinity crosslinking. RNA 3:561-576.
    • (1997) RNA , vol.3 , pp. 561-576
    • Harris, M.E.1    Kazantsev, A.V.2    Chen, J.L.3    Pace, N.R.4
  • 25
    • 0027990605 scopus 로고
    • Use of photoaffinity crosslinking and molecular modeling to analyze the global architecture of ribonuclease P RNA
    • Harris ME, Nolan JM, Malhotra A, Brown JW, Harvey SC, Pace NR. 1994. Use of photoaffinity crosslinking and molecular modeling to analyze the global architecture of ribonuclease P RNA. EMBO J 13:3953-3963.
    • (1994) EMBO J , vol.13 , pp. 3953-3963
    • Harris, M.E.1    Nolan, J.M.2    Malhotra, A.3    Brown, J.W.4    Harvey, S.C.5    Pace, N.R.6
  • 26
    • 0029286551 scopus 로고
    • Identification of phosphates involved in catalysis by the ribozyme RNase P RNA
    • Harris ME, Pace NR. 1995. Identification of phosphates involved in catalysis by the ribozyme RNase P RNA. RNA 1:210-218.
    • (1995) RNA , vol.1 , pp. 210-218
    • Harris, M.E.1    Pace, N.R.2
  • 27
    • 0017361887 scopus 로고
    • A crystallographic study of metal-binding to yeast phenylalanine transfer RNA
    • Jack A, Ladner JE, Rhodes D, Brown RS, Klug A. 1977. A crystallographic study of metal-binding to yeast phenylalanine transfer RNA. J Mol Biol 111:315-328.
    • (1977) J Mol Biol , vol.111 , pp. 315-328
    • Jack, A.1    Ladner, J.E.2    Rhodes, D.3    Brown, R.S.4    Klug, A.5
  • 28
    • 0029283999 scopus 로고
    • GNRA tetraloops make a U-turn
    • Jucker FM, Pardi A. 1995. GNRA tetraloops make a U-turn. RNA 1:219-222.
    • (1995) RNA , vol.1 , pp. 219-222
    • Jucker, F.M.1    Pardi, A.2
  • 29
    • 0024589767 scopus 로고
    • Rapid and efficient synthesis of nucleoside 5′-O-(1-thiotriphosphates), 5′-triphosphates and 2′,3′-cyclophosphorothioates using 2-chloro-4H-1,2,3-benzodioxaphosphorin-4-one
    • Ludwig J, Eckstein F. 1989. Rapid and efficient synthesis of nucleoside 5′-O-(1-thiotriphosphates), 5′-triphosphates and 2′,3′-cyclophosphorothioates using 2-chloro-4H-1,2,3-benzodioxaphosphorin-4-one. J Org Chem 54:631-635.
    • (1989) J Org Chem , vol.54 , pp. 631-635
    • Ludwig, J.1    Eckstein, F.2
  • 31
    • 0028962136 scopus 로고
    • Evolutionary perspective on the structure and function of ribonuclease P, a ribozyme
    • Pace NR, Brown JW. 1995. Evolutionary perspective on the structure and function of ribonuclease P, a ribozyme. J Bacteriol 177:1919-1928.
    • (1995) J Bacteriol , vol.177 , pp. 1919-1928
    • Pace, N.R.1    Brown, J.W.2
  • 32
    • 0017182937 scopus 로고
    • Structural domains of transfer RNA molecules
    • Quigley GJ, Rich A. 1976. Structural domains of transfer RNA molecules. Science 194:796-806.
    • (1976) Science , vol.194 , pp. 796-806
    • Quigley, G.J.1    Rich, A.2
  • 33
    • 0029073091 scopus 로고
    • The crystal structure of an all-RNA hammerhead ribozyme: A proposed mechanism for RNA catalytic cleavage
    • Scott WG, Finch JT, Klug A. 1995. The crystal structure of an all-RNA hammerhead ribozyme: A proposed mechanism for RNA catalytic cleavage. Cell 81:991-1002.
    • (1995) Cell , vol.81 , pp. 991-1002
    • Scott, W.G.1    Finch, J.T.2    Klug, A.3
  • 34
    • 0025114769 scopus 로고
    • 2,4-Disubstituted pyrrolo[2,3-d]pyrimidine α-D- And β-D-ribofuranosides related to 7-deazaguanosine
    • Seela F, Soulimane T, Mersmann K, Jürgens T. 1990. 2,4-Disubstituted pyrrolo[2,3-d]pyrimidine α-D- and β-D-ribofuranosides related to 7-deazaguanosine. Helv Chim Acta 73:1879-1887.
    • (1990) Helv Chim Acta , vol.73 , pp. 1879-1887
    • Seela, F.1    Soulimane, T.2    Mersmann, K.3    Jürgens, T.4
  • 35
    • 0027256149 scopus 로고
    • Multiple magnesium ions in the ribonuclease P reaction mechanism
    • Smith D, Pace NR. 1993. Multiple magnesium ions in the ribonuclease P reaction mechanism. Biochemistry 32:5273-5281.
    • (1993) Biochemistry , vol.32 , pp. 5273-5281
    • Smith, D.1    Pace, N.R.2
  • 36
    • 0030965811 scopus 로고    scopus 로고
    • Defining the chemical groups essential for Tetrahymena group I intron function by nucleotide analog interference mapping
    • Strobel SA, Shetty K. 1997. Defining the chemical groups essential for Tetrahymena group I intron function by nucleotide analog interference mapping. Proc Natl Acad Sci USA 94:2903-2908.
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 2903-2908
    • Strobel, S.A.1    Shetty, K.2
  • 37
    • 0028362214 scopus 로고
    • Three-dimensional working model of M1 RNA, the catalytic RNA subunit of ribonuclease P from Escherichia coli
    • Westhof E, Altman S. 1994. Three-dimensional working model of M1 RNA, the catalytic RNA subunit of ribonuclease P from Escherichia coli. Proc Natl Acad Sci USA 91:5133-5137.
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 5133-5137
    • Westhof, E.1    Altman, S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.