New structure - Novel fold?

Structure

Volumn 5, Issue 2, 1997, Pages 165-171

  Holm, Liisa ^a   Sander, Chris ^a  

^a WELLCOME TRUST SANGER INSTITUTE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMALIA;

EID: 0030935327     PISSN: 09692126     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0969-2126(97)00176-7     Document Type: Article

References (24)

1. Bernstein, F.C., et al., & Tasumi, M. (1977). The protein data bank: a computer-based archival file for macromolecular structures. J. Mol. Biol. 112, 535-542.
2. Holm, L. & Sander, C. (1996). Mapping the protein universe. Science 273, 595-602.
3. Alexandrov, N.N., Takahashi, K. & Go, N. (1994). Biological meaning, statistical significance, and classification of local spatial similarities in nonhomologous proteins. Protein Sci. 3, 866-875.
4. Sali, A. & Blundell, T.L. (1990). Definition of general topological equivalence in protein structures. J. Mol. Biol. 212, 403-428.
5. Orengo, C.A., Flores, T.P., Taylor, W.R. & Thornton, J.M. (1993). Identification and classification of protein fold families. Protein Eng. 6, 485-500.
6. Levitt, M. & Chothia, C. (1976). Structural patterns in globular proteins. Nature 261, 552-558.
7. Richardson, J.S. (1981). The anatomy and taxonomy of protein structure. Adv. Protein Chem. 34, 167-339.
8. Murzin, A.G., Brenner, S.E., Hubbard, T. & Chothia, C. (1995). SCOP: a structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol. 247, 536-540.
9. Holm, L. & Sander, C. (1995). Dali: a network tool for protein structure comparison. Trends Biochem. Sci. 20, 478-480.
10. Holm, L. & Sander, C. (1987). Enzyme HIT. Trends Biochem. Sci., in press.
11. Holm, L. & Sander, C. (1995). Evolutionary link between glycogen phosphorylase and a DNA modifying enzyme. EMBO J. 14, 1287-1293.
12. Holm, L. & Sander, C. (1995). DNA polymerase β belong to an ancient nucleotidyltransferase superfamily. Trends Biochem. Sci. 20, 345-347.
13. Holm, L. & Sander, C. (1994). Structural similarity between plant endochitinase and lysozymes from animal and phage: an evolutionary connection. FEBS Lett. 340, 129-132.
14. Jabri, E., Carr, M.B., Hausinger, R.P. & Karplus, P.A. (1995). The crystal structure of urease from Klebsiella aerogenes at 2.2 Å resolution. Science 268, 998-1004.
15. Lima, C.D., Klein, M.G., Weinstein, I.B. & Hendrickson, W.A. (1996). Three-dimensional structure of human protein kinase C interacting protein 1, a member of the H IT family of proteins. Proc. Natl. Acad. Sci. 93, 535-5362.
16. Wedekind, J.E., Frey, P.A. & Rayment, I. (1995). Three-dimensional structure of galactose-1 -phosphate uridylyltransferase from Escherichia coli at 1.8 Å resolution. Biochemistry 34, 11049-11061.
17. 6 topology. J. Biol. Chem. 264, 3685-3693.
18. Efimov, A.V. (1995). Structural similarity between two-layer α/β and β proteins. J. Mol. Biol. 245, 402-415.
19. Kraulis, P. (1991). MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures. J. Appl. Cryst. 24, 946-950.
20. Essen, L.O., Perisic, O., Cheung, R., Katan, M. & Williams, R.L. (1996). Crystal structure of a mammalian phosphoinositide-specific phospholipase Co. Nature 380, 595-602.
21. Fisher, A.J., Rauschel, F.M., Baldwin, T.O. & Rayment, I. (1995). Three-dimensional structure of bacterial luciferase from Vibrio harveyi at 2.4 Å resolution. Biochemistry 34, 6581-6586.
22. 8 fold in luciferase. Protein Sci. 3, 1914-1926.
23. Lesk, A.M., Bränden, C.I. & Chothia, C. (1989). Structural principles of α/β barrel proteins: the packing of the interior of the sheet. Proteins 5, 139-148.
24. Leesong, M., Henderson, B.S., Gillig, J.R., Schwab, J.M. & Smith, J.L. (1996). Structure of a dehydratase-isomerase from the bacterial pathway for biosynthesis of unsaturated fatty acids: two catalytic activities in one active site. Structure 4, 253-264.