Heat shock element architecture is an important determinant in the temperature and transactivation domain requirements for heat shock transcription factor

Molecular and Cellular Biology

Volumn 18, Issue 11, 1998, Pages 6340-6352

  Santoro, Nicholas ^a   Johansson, Nina ^a,b   Thiele, Dennis J ^a  

^a UNIVERSITY OF MICHIGAN MEDICAL SCHOOL   (United States)

^b UNIVERSITY OF TURKU   (Finland)

Author keywords

[No Author keywords available]

Indexed keywords

TRANSCRIPTION FACTOR;

ARTICLE; BINDING SITE; CARBOXY TERMINAL SEQUENCE; GENE ACTIVATION; GENE STRUCTURE; HEAT SHOCK; NONHUMAN; OXIDATIVE STRESS; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN CONFORMATION; PROTEIN DNA BINDING; PROTEIN DOMAIN; SACCHAROMYCES CEREVISIAE; TEMPERATURE; TRANSACTIVATION; TRANSCRIPTION REGULATION;

SACCHAROMYCES CEREVISIAE;

EID: 0031771494     PISSN: 02707306     EISSN: None     Source Type: Journal    
DOI: 10.1128/MCB.18.11.6340     Document Type: Article

References (74)

1. Alani, E., L. Cao, and N. Kleckner. 1987. A method for gene disruption that allows repeated use of URA3 selection in the construction of multiply disrupted yeast strains. Genetics 116:541-545.
2. Amin, J., J. Ananthan, and R. Voellmy. 1988. Key features of heat shock regulatory elements. Mol. Cell. Biol. 8:3761-3769.
3. Ausubel, F. M., R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith, and K. Strahl (ed.). 1987. Current protocols in molecular biology. John Wiley & Sons, New York, N.Y.
4. Bonner, J. J., C. Ballou, and D. L. Fackenthal. 1994. Interactions between DNA-bound trimers of the yeast heat shock factor. Mol. Cell. Biol. 14:501-508.
5. Bonner, J. J., S. Heyward, and D. L. Fackenthal. 1992. Temperature-dependent regulation of a heterologous transcription activation domain fused to yeast heat shock transcription factor. Mol. Cell. Biol. 12:1021-1030.
6. Boorstein, W. R., and E. A. Craig. 1990. Structure and regulation of the SSA4 HSP70 gene of Saccharomyces cerevisiae. J. Biol. Chem. 265:18912-18921.
7. Boorstein, W. R., and E. A. Craig. 1990. Transcriptional regulation of SSA3, an HSP70 gene from Saccharomyces cerevisiae. Mol. Cell. Biol. 10:3262-3267.
8. Borkovich, K. A., F. W. Farrelly, D. B. Finkelstein, J. Taulien, and S. Lindquist. 1989. hsp82 is an essential protein that is required in higher concentrations for growth of cells at higher temperatures. Mol. Cell. Biol. 9:3919-3930.
9. Brown, J. L., H. Bussey, and R. C. Stewart. 1994. Yeast Skn7p functions in a eukaryotic two-component regulatory pathway. EMBO J. 13:5186-5194.
10. Brown, J. L., S. North, and H. Bussey. 1993. SKN7, a yeast multicopy suppressor of a mutation affecting cell wall β-glucan assembly, encodes a product with domains homologous to prokaryotic two-component regulators and to heat shock transcription factors. J. Bacteriol. 175:6908-6915.
11. Butler, G., and D. J. Thiele. 1991. ACE2, an activator of yeast metallothionein expression which is homologous to SWI5. Mol. Cell. Biol. 11:476-485.
12. Butt, T. R., E. Sternberg, J. Herd, and S. T. Crooke. 1984. Cloning and expression of a yeast copper metallothionein gene. Gene 27:23-33.
13. Cahill, C. M., W. R. Waterman, Y. Xie, P. E. Auron, and S. K. Calderwood. 1996. Transcriptional repression of the prointerleukin 1β gene by heat shock factor 1. J. Biol. Chem. 271:24874-24879.
14. Chen, Y., N. A. Barlev, O. Westergaard, and B. K. Jakobsen. 1993. Identification of the C-terminal activator domain in yeast heat shock factor: independent control of transient and sustained transcriptional activity. EMBO J. 12:5007-5018.
15. Clos, J., J. T. Westwood, P. B. Becker, S. Wilson, K. Lambert, and C. Wu. 1990. Molecular cloning and expression of a hexameric Drosophila heat shock factor subject to negative regulation. Cell 63:1085-1097.
16. Cotto, J. J., M. Kline, and R. I. Morimoto. 1996. Activation of heat shock factor 1 DNA binding precedes stress-induced serine phosphorylation. Evidence for a multistep pathway of regulation. J. Biol. Chem. 271:3355-3358.
17. Drees, B. L., E. K. Grotkop, and H. C. M. Nelson. 1997. The GCN4 leucine zipper can functionally substitute for the heat shock transcription factor's trimerization domain. J. Mol. Biol. 273:61-74.
18. Erkine, A. M., C. C. Adams, M. Gao, and D. S. Gross. 1995. Multiple protein-DNA interactions over the yeast HSC82 heat shock gene promoter. Nucleic Acids Res. 23:1822-1829.
19. Fernandes, M., H. Xiao, and J. T. Lis. 1994. Fine structure analyses of the Drosophila and Saccharomyces heat shock factor-heat shock element interactions. Nucleic Acids Res. 22:167-173.
20. Flick, K. E., L. Gonzalez, Jr., C. J. Harrison, and H. C. Nelson. 1994. Yeast heat shock transcription factor contains a flexible linker between the DNA-binding and trimerization domains. Implications for DNA binding by trimeric proteins. J. Biol. Chem. 269:12475-12481.
21. Fujita, A., Y. Kikuchi, S. Kuhara, Y. Misumi, S. Matsumoto, and H. Kobayashi. 1989. Domains of the SFL1 protein of yeasts are homologous to Myc oncoproteins of yeast heat-shock transcription factor. Gene 85:321-328.
22. Fujita, T., G. Nolan, S. Ghosh, and D. Baltimore. 1992. Independent modes of activation by the p50 and p65 subunits of NF-κB. Genes Dev. 6:775-787.
23. Gallo, G. J., H. Prentice, and R. E. Kingston. 1993. Heat shock factor is required for growth at normal temperatures in the fission yeast Schizosaccharomyces pombe. Mol. Cell. Biol. 13:749-761.
24. Giardina, C., and J. T. Lis. 1995. Dynamic protein-DNA architecture of a yeast heat shock promoter. Mol. Cell. Biol. 15:2737-2744.
25. Gross, D. S., C. C. Adams, S. Lee, and B. Stentz. 1993. A critical role for heat shock transcription factor in establishing a nucleosome-free region over the TATA-initiation site of the yeast HSP82 heat shock gene. EMBO J. 12:3931-3945.
26. Harrison, C. J., A. A. Bohm, and H. C. Nelson. 1994. Crystal structure of the DNA binding domain of the heat shock transcription factor. Science 263: 224-227.
27. Jakobsen, B. K., and H. R. Pelham. 1988. Constitutive binding of yeast heat shock factor to DNA in vivo. Mol. Cell. Biol. 8:5040-5042.
28. Jakobsen, B. K., and H. R. B. Pelham. 1991. A conserved heptapeptide restrains the activity of the yeast heat shock transcription factor. EMBO J. 10:369-375.
29. Koch, K. A., and D. J. Thiele. 1996. Autoactivation by a Candida glabrata copper metalloregulatory transcription factor requires critical minor groove interactions. Mol. Cell. Biol. 16:724-734.
30. Kroeger, P. E., and R. I. Morimoto. 1994. Selection of new HSF1 and HSF2 DNA-binding sites reveals difference in trimer cooperativity. Mol. Cell. Biol. 14:7592-7603.
31. Kroeger, P. E., K. D. Sarge, and R. I. Morimoto. 1993. Mouse heat shock transcription factors 1 and 2 prefer a trimeric binding site but interact differently with the HSP70 heat shock element. Mol. Cell. Biol. 13:3370-3383.
32. Labbe, S., Z. Zhu, and D. J. Thiele. 1997. Copper-specific transcriptional repression of yeast genes encoding critical components in the copper transport pathway. J. Biol. Chem. 272:15951-15958.
33. Leppa, S., L. Pirkkala, H. Saarento, K. D. Sarge, and L. Sistonen. 1997. Overexpression of HSF2-β inhibits hemin-induced heat shock gene expression and erythroid differentiation in K562 cells. J. Biol. Chem. 272:15293-15298.
34. Lipkin, S. M., C. A. Nelson, C. K. Glass, and M. G. Rosenfeld. 1992. A negative retinoic acid response element in the rat oxytocin promoter restricts transcriptional stimulation by heterologous transactivation domains. Proc. Natl. Acad. Sci. USA 89:1209-1213.
35. Liu, X.-D., P. C. C. Liu, N. Santoro, and D. J. Thiele. 1997. Conservation of a stress response: human heat shock transcription factors functionally substitute for yeast HSF. EMBO J. 16:6466-6477.
36. Liu, X.-D., and D. J. Thiele. 1996. Oxidative stress induces heat shock factor phosphorylation and HSF-dependent activation of yeast metallothionein gene transcription. Genes Dev. 10:592-603.
37. Morgan, B. A., G. R. Banks, W. M. Toone, D. Raitt, S. Kuge, and L. H. Johnston. 1997. The Skn7 response regulator controls gene expression in the oxidative stress response of the budding yeast Saccharomyces cerevisiae. EMBO J. 16:1035-1044.
38. Moritomo, R. I., A. Tissieres, and C. Georgopoulos (ed.). 1994. The biology of heat shock proteins and chaperones. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
39. Myers, A. M., A. Tzagoloff, D. M. Kinney, and C. J. Lusty. 1986. Yeast shuttle and integrative vectors with multiple cloning sites suitable for construction of lacZ fusions. Gene 45:299-310.
40. Nakai, A., and R. I. Morimoto. 1993. Characterization of a novel chicken heat shock transcription factor, heat shock factor 3, suggests a new regulatory pathway. Mol. Cell. Biol. 13:1983-1997.
41. Nakai, A., M. Tanabe, Y. Kawazoe, J. Inazawa, R. I. Morimoto, and K. Nagata. 1997. HSF4, a new member of the human heat shock factor family which lacks properties of a transcriptional activator. Mol. Cell. Biol. 17:469-481.
42. Nieto-Sotelo, J., G. Wiederrecht, A. Okuda, and C. S. Parker. 1990. The yeast heat shock transcription factor contains a transcriptional activation domain whose activity is repressed under nonshock conditions. Cell 62:807-817.
43. Nover, L. 1987. Expression of heat shock genes in homologous and heterologous systems. Enzyme Microb. Technol. 9:129-192.
44. Rabindran, S. K., G. Giorgi, J. Clos, and C. Wu. 1991. Molecular cloning and expression of a human heat shock factor. HSF1. Proc. Natl. Acad. Sci. USA 88:6906-6910.
45. Rabindran, S. K., R. I. Haronn, J. Clos, J. Wisniewski, and C. Wu. 1993. Regulation of heat shock factor trimer formation: role of a conserved leucine zipper. Science 259:230-234.
46. Rallu, M., M. Loones, Y. Lallemand, R. Morimoto, M. Morange, and V. Mezger. 1997. Function and regulation of heat shock factor 2 during mouse embryogenesis. Proc. Natl. Acad. Sci. USA 94:2392-2397.
47. Rhodes, D. 1989. Analysis of sequence-specific DNA binding proteins, p. 177-198. In T. E. Creighton (ed.), Protein function: a practical approach. IRL Press, New York, N.Y.
48. Sarge, K. D., S. P. Murphy, and R. I. Morimoto. 1993. Activation of heat shock gene transcription by heat shock factor 1 involves oligomerization, acquisition of DNA-binding activity, and nuclear localization and can occur in the absence of stress. Mol. Cell. Biol. 13:1392-1407.
49. Sarge, K. D., O. K. Parke-Sarge, J. D. Kirby, K. E. Mayo, and R. I. Morimoto. 1994. Expression of heat shock factor 2 in mouse testis: potential role as a regulator of heat-shock protein gene expression during spermatogenesis. Biol. Reprod. 50:1334-1343.
50. Sarge, K. D., V. Zimarino, K. Holm, C. Wu, and R. I. Morimoto. 1991. Cloning and characterization of two mouse heat shock factors with distinct inducible and constitutive DNA-binding ability. Genes Dev. 5:1902-1911.
51. Scharf, K. D., S. Rose, W. Zott, F. Schoffl, L. Nover, and F. Schott. 1990. Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF. EMBO J. 9:4495-4501.
52. Schreiber, E. P. Matthias, M. Muller, and W. Schaffner. 1988. Identification of a novel lymphoid specific octamer binding protein (OTF-2B) by proteolytic clipping bandshift assay (PCBA). EMBO J. 7:4221-4229.
53. Schuetz, T. J., G. J. Gallo, L. Sheldon, P. Tempst, and R. E. Kingston. 1991. Isolation of a cDNA for HSF2: evidence for two heat shock factor genes in humans. Proc. Natl. Acad. Sci. USA 88:6911-6915.
54. Silar, P., G. Butler, and D. J. Thiele. 1991. Heat shock transcription factor activates transcription of the yeast metallothionein gene. Mol. Cell. Biol. 11: 1232-1238.
55. Sistonen, L., K. D. Sarge, B. Phillips, K. Abravaya, and R. I. Morimoto. 1992. Activation of heat shock factor 2 during hemin-induced differentiation of human erythroleukemia cells. Mol. Cell. Biol. 12:4104-4111.
56. Sorger, P. K. 1990. Yeast heat shock factor contains separable transient and sustained response transcriptional activators. Cell 62:793-805.
57. Sorger, P. K., G. Ammerer, and D. Shore. 1989. Identification and purification of sequence-specific DNA-binding proteins, p. 199-224. In T. E. Creighton (ed.), Protein function: a practical approach. IRL Press, New York, N.Y.
58. Sorger, P. K., and H. C. M. Nelson. 1989. Trimerization of a yeast transcriptional activator via a coiled-coil motif. Cell 59:807-813.
59. Sorger, P. K., and H. R. Pelham. 1987. Purification and characterization of a heat-shock element binding protein from yeast. EMBO J. 6:3035-3041.
60. Sorger, P. K., and H. R. B. Pelham. 1988. Yeast heat shock factor is an essential DNA-binding protein that exhibits temperature-dependent phosphorylation. Cell 54:855-864.
61. Starr, D. B., W. Matsui, J. R. Thomas, and K. R. Yamamoto. 1996. Intracellular receptors use a common mechanism to interpret signaling information at response elements. Genes Dev. 10:1271-1283.
62. Stevens, S. Y., P. C. Swanson, and G. D. Glick. 1994. Application of the gel shift assay to study the affinity and specificity of anti-DNA autoantibodies. J. Immunol. Methods 177:185-190.
63. Tamai, K. T., X. Liu, P. Silar, T. Sosinowski, and D. J. Thiele. 1994. Heat shock transcription factor activates yeast metallothionein gene expression in response to heat and glucose starvation via distinct signalling pathways. Mol. Cell. Biol. 14:8155-8165.
64. Tan, S., and T. J. Richmond. 1990. DNA binding-induced conformational change of the yeast transcriptional activator PRTF. Cell 62:367-377.
65. Topol, J., D. M. Ruden, and C. S. Parker. 1985. Sequences required for in vitro transcriptional activation of a Drosophila hsp 70 gene. Cell 42:527-537.
66. Vuister, G. W., S. J. Kim, A. Orosz, J. Marquardt, C. Wu, and A. Bax. 1994. Solution structure of the DNA-binding domain of Drosophila heat shock transcription factor. Nat. Struct. Biol. 1:605-614.
67. Westwood, J. T., J. Clos, and C. Wu. 1991. Stress-induced oligomerization and chromosomal relocalization of heat-shock factor. Nature 353:822-827.
68. Westwood, J. T., and C. Wu. 1993. Activation of Drosophila heat shock factor: conformational change associated with a monomer-to-trimer transition. Mol. Cell. Biol. 13:3481-3486.
69. Wiederrecht, G., D. Seto, and C. S. Parker. 1988. Isolation of the gene encoding the S. cerevisiae heat shock transcription factor. Cell 54:841-853.
70. Wu, C. 1995. Heat shock transcription factors: structure and regulation. Annu. Rev. Cell Dev. Biol. 11:441-469.
71. Xiao, H., and J. T. Lis. 1988. Germline transformation used to define key features of heat-shock response elements. Science 239:1139-1142.
72. Xiao, H., O. Perisic, and J. T. Lis. 1991. Cooperative binding of Drosophila heat shock factor to arrays of a conserved 5 bp unit. Cell 64:585-593.
73. Young, M. R., and E. A. Craig. 1993. Saccharomyces cerevisiae HSP70 heat shock elements are functionally distinct. Mol. Cell. Biol. 13:5637-5646.
74. Zuo, J., D. Rungger, and R. Voellmy. 1995. Multiple layers of regulation of human heat shock transcription factor 1. Mol. Cell. Biol. 15:4319-4330.