Autoactivation by a Candida glabrata copper metalloregulatory transcription factor requires critical minor groove interactions

Molecular and Cellular Biology

Volumn 16, Issue 2, 1996, Pages 724-734

  Koch, Keith A ^a   Thiele, Dennis J ^a  

^a UNIVERSITY OF MICHIGAN MEDICAL SCHOOL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE; ARGININE; COPPER; FUNGAL DNA; RECOMBINANT PROTEIN; TRANSCRIPTION FACTOR;

ARTICLE; BINDING AFFINITY; CANDIDA GLABRATA; CONTROLLED STUDY; DNA BINDING; NONHUMAN; PRIORITY JOURNAL; PROMOTER REGION; SITE DIRECTED MUTAGENESIS; TRANSCRIPTION REGULATION;

CANDIDA GLABRATA;

EID: 0030067833     PISSN: 02707306     EISSN: None     Source Type: Journal    
DOI: 10.1128/MCB.16.2.724     Document Type: Article

References (54)

1. Ansari, A. Z., M. L. Chael, and T. V. O'Halloran. 1992. Allosteric underwinding of DNA is a critical step in positive control of transcription by Hg-MerR. Nature (London) 355:87-89
2. Ashar, H. R., M. Schoenberg Fejzo, A. Tkachenko, X. Zhou, J. A. Fletcher, S. Weremowicz, C. C. Morton, and K. Chada. 1995. Disruption of the architectural factor HMGI-C: DNA-bindmg AT hook motifs fused in lipomas to distinct transcriptional regulatory domains. Cell 82:57-65.
3. Ausubel, F. M., R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith, and K. Struhl. 1987. Current protocols inmolecular biology. John Wiley & Sons, New York.
4. Baldwin, C. T., C. F. Hoth, J. A. Amos, E. O. da-Silva, and A. Milunsky. 1992. An exonic mutation in the HuP2 paired domain gene causes Waardenburg's syndrome. Nature (London) 355:637-638.
5. Balling, R., U. Deutsch, and P. Gruss. 1988. undulated, a mutation affecting the development of the mouse skeleton, has a point mutation in the paired box of Pax 1. Cell 55:531-535
6. Bencini, D. A., G. A. O'Donovan, and J. R. Wild. 1984. Rapid chemical degradation sequencing. BioTechniques 2:4
7. Bernardi, A., C. Gaillard, and G. Bernardi. 1975. The specificity of five DNAases as studied by analysis of 5′-terminal doublets Eur. J. Biochem. 52:451-457
8. Bopp, D., M. Burri, S. Baumbartner, G. Frigerio, and M. Noll. 1986. Conservation of a large protein domain in the segmentation gene paired and in functionally related genes of Drosophila. Cell 47:1033-1040.
9. Buchman, C., P. Skroch, W. Dixon, T. D. Tullius, and M. Karin. 1990. A single amino acid change in CUP2 alters its mode of DNA binding. Mol. Cell. Biol. 10:4778-4787.
10. Buchman, C., P. Skroch, J. Welch, S. Fogel, and M. Karin. 1989 The CUP2 gene product, regulator of yeast metallothionem expression, is a copper-activated DNA-bindmg protein Mol. Cell Biol 9:4091-4095.
11. Carrì, M. T., F. Galiazzo, M. R. Ciriolo, and G. Rotilio. 1991 Evidence for co-regulation of Cu,Zn superoxide dismutase and metallothionein gene expression in yeast through transcriptional control by copper via the ACE1 factor. FEBS Lett. 2278:263-266.
12. Chalepakis, G., J. Wijnholds, and P. Gruss. 1994 Pax-3-DNA interaction: flexibility in the DNA binding and induction of DNA conformational changes by paired domains. Nucleic Acids Res. 22:3131-3137.
13. Culotta, V. C., W. R. Howard, and X. Liu. 1994. CRS5 encodes a metallothioncin-like protein in Saccharomyces cerevisiae J. Biol Chem 269:25295-25302
14. Deutsch, U., G. R. Dressler, and P. Gruss. 1988. Pax I, a member of a paired box homologous murine gene family, is expressed in segmented structures during development Cell 53:617-625
15. Dobi, A., C. T. Dameron, S. Hu, D. Hamer, and D. R. Winge. 1995 Distinct regions of Cu(I)-ACE1 contact two spatially resolved DNA major groove sites. J Biol. Chem 270:10171-10178
16. Evans, C. F., D. R. Engelke, and D. J. Thiele. 1990. ACE1 transcription factor produced in Escherichia coli binds multiple regions within yeast metallothionem upstream activation sequences. Mol. Cell. Biol. 10:426-429
17. Fried, M., and D. M. Crothers. 1981. Equilibria and kinetics of lac repressor-operator interactions by polyacrylamide gel electrophoresis. Nucleic Acids Res 9:6505-6525.
18. Fürst, P., and D. Hamer. 1989 Cooperative activation of a eukaryotic transcription factor: interaction between Cu(I) and yeast ACE1 protein. Proc. Natl. Acad. Sci. USA 86:5267-5271.
19. Fürst, P., S. Hu, R. Hackett, and D. Hamer. 1988. Copper activates metallothionem gene transcription by altering the conformation of a specific DNA binding protein. Cell 55:705-717.
20. Geierstauger, B. H., B. F. Volkman, W. Kremer, and D. E. Wemmer. 1994. Short peptide fragments derived from HMG-I/Y proteins bind specifically to the minor groove of DNA. Biochemistry 33:5347-5355
21. Gralla, E. B., D. J. Thiele, P. Silar, and J. S. Valentine. 1991. ACE1, a copper-dependent transcription factor, activates expression of the yeast copper, zinc superoxide dismutase gene. Proc. Natl. Acad. Sci. USA 88:8558-8562.
22. Halliwell, B. 1994 Free radicals and antioxidants: a personal review. Nutr. Rev. 52:253-265.
23. Halliwell, B., and J. M. C. Gutteridge. 1990. Role of free radicals and catalytic metal ions in human disease: an overview. Methods Enzymol 186: 1-85
24. Hayes, J. J., and T. D. Tullius. 1989. The missing nucleoside experiment: a new technique to study recognition of DNA by protein. Biochemistry 28: 9521-9527.
25. Heuchel, R., F. Radtke, and W. Schaffner. 1995. Transcriptional regulation by heavy metals, exemplified at the metallothionein genes, p. 206-240. In P. A. Baeuerle (ed), Inducible gene expression, vol. 1 Birkhauser, Boston.
26. Hill, A. V. 1910. The possible effects of aggregation of the molecules of hemoglobin on its dissociation curves. J. Physiol. (London) 40:iv.
27. Hope, I. A., and K. Struhl. 1986. Functional dissection of a eukaryotic transcriptional activator protein, GCN4 of yeast Cell 46:885-894.
28. Hoth, C. F., A. Milunsky, N. Lipsky, R. Sheffer, S. K. Clarren, and C. T. Baldwin. 1993. Mutations in the paired domain of the human PAX3 gene cause Klein-Waardenburg syndrome (WS-III) as well as Waardenburg syndrome type I (WS-I). Am. J. Hum. Genet. 52:455-462.
29. Hu, S., P. Fürst, and D. Hamer. 1990. The DNA and Cu binding function of ACE1 are interdigitated within a single domain. New Biol. 2:544-555.
30. Huibregtse, J. M., D. R. Engelke, and D. J. Thiele. 1989. Copper-induced binding of cellular factors to yeast metallothionein upstream activation sequences Proc. Natl Acad. Sci. USA 86:65-69.
31. Ito, H., Y. Fukada, K. Murata, and A. Kimura. 1983. Transformation of intact yeast cells treated with alkali cations. J. Bacteriol. 153:163-168.
32. Jungmann, J., H.-A. Reins, J. Lee, A. Romeo, R. Hassett, D. Kosman, and S. Jentsch. 1993. MAC1, a nuclear regulatory protein related to Cu-dependent transcription factors is involved in Cu/Fe utilization and stress resistance in yeast. EMBO J. 12:5051-5056.
33. Koch, K. A., and D. J. Thiele. Unpublished data.
34. Köhrer, K., and H. Domdey. 1991. Preparation of high molecular weight RNA. Methods Enzymol. 194:398-405.
35. Linder, M. C. 1991. Biochemistry of copper. Plenum Press, New York.
36. Lund, T., K. H. Dahl, E. Mørk, J. Holtlund, and S. G. Laland. 1987. The human chromosomal protein HMG I contains two identical palindrome amino acid sequences. Biochem. Biophys. Res. Commun. 146:725-730.
37. Majumdar, A., and S. Adhya. 1989. Effect of ethylation of operator-phosphates on Gal repressor binding. J. Mol. Biol. 208:217-223.
38. O'Halloran, T. V. 1993. Transition metals in control of gene expression. Science 261:715-725
39. Predki, P. F., and B. Sarkar. 1992. Effect of replacement of "zinc finger" zinc on estrogen receptor DNA interactions. J. Biol. Chem. 267:5842-5846.
40. Saccomanno, C. F., M. Bordonaro, J. S. Chen, and J. L. Nordstrom. 1992. A faster ribonuclease protection assay. BioTechniques 13:846-850.
41. Sherman, F., G. R. Fink, and J. B. Hicks. 1986. Methods in yeast genetics. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
42. Sorger, P. K., and H. R. B. Pelham. 1988. Yeast heat shock factor is an essential DNA-binding protein that exhibits temperature-dependent phosphorylation. Cell 54:855-864.
43. Studier, F. W., A. H. Rosenberg, J. J. Dunn, and J. W. Dubendorff. 1990. Use of T7 RNA polymerase to direct expression of cloned genes. Methods Enzymol. 185:60-89.
44. Szczypka, M., and D. J. Thiele. 1989. A cysteine-rich nuclear protein activates yeast metallothionein gene transcription. Mol. Cell. Biol. 9:421-429
45. Thiele, D. J. 1988. ACE1 regulates expression of the Saccharomyces cerevisiae metallothionein gene. Mol. Cell Biol. 8:2745-2752
46. Thiele, D. J. 1992. Metal-regulated transcription in eukaryotes. Nucleic Acids Res. 20:1183-1191.
47. 2+ coordination in the DNA-binding domain of the AMT1 transcription factor from Candida glabrata. Biochemistry 33:9566-9577.
48. Xu, W., M. A. Rould, S. Jun, C. Desplan, and C. O. Pabo. 1995. Crystal structure of a paired domain-DNA complex at 2.5 Å resolution reveals structural basis for Pax developmental mutations. Cell 80:639-650.
49. Zhang, S. P., G. Zubay, and E. Goldman. 1991. Low-usage codons in Escherichia coli, yeast, fruit fly and primates. Gene 105:61-72.
50. Zhou, P., M. S. Szczypka, T. Sosinowski, and D. J. Thiele. 1992. Expression of a yeast metallothionein gene family is activated by a single metalloregulatory transcription factor. Mol. Cell. Biol. 12:3766-3775.
51. Zhou, P., M. S. Szczypka, R. Young, and D. J. Thiele. 1994. A system for gene cloning and manipulation in the yeast Candida glabrala. Gene 142:135-140.
52. Zhou, P., and D. J. Thiele. 1991. Isolation of a metal-activated transcription factor gene from Candida glabrata by complementation in Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 88:6112-6116.
53. Zhou, P., and D. J. Thiele. 1993. Rapid transcriptional autoregulation of a yeast metalloregulatory factor is essential for high-level copper detoxification. Genes Dev. 7:1824-1835.
54. Zieg, J., and M. I. Simon. 1980. Analysis of the nucleotide sequence of an invertible controlling element. Proc. Natl. Acad. Sci. USA 77:4196-4200.