Similarities between the antABC-encoded anthranilate dioxygenase and the benABC-encoded benzoate dioxygenase of Acinetobacter sp. strain ADP1

Journal of Bacteriology

Volumn 180, Issue 17, 1998, Pages 4466-4474

  Bundy, Becky M ^a   Campbell, Alan L ^a   Neidle, Ellen L ^a  

^a UNIVERSITY OF GEORGIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANTHRANILIC ACID DERIVATIVE; AROMATIC COMPOUND; BACTERIAL ENZYME; BENZOIC ACID DERIVATIVE; CARBON; CATECHOL; IRON; OXYGENASE;

ACINETOBACTER; ARTICLE; BACTERIUM MUTANT; BACTERIUM TRANSFORMATION; CATALYSIS; CHROMOSOME MAP; DRUG DEGRADATION; ENZYME INDUCTION; ENZYME SPECIFICITY; ESCHERICHIA COLI; GENE ISOLATION; GROWTH INHIBITION; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SEQUENCE HOMOLOGY; TRYPTOPHAN METABOLISM;

ACINETOBACTER; ACINETOBACTER SP.; BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; NEGIBACTERIA;

EID: 0031720708     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/jb.180.17.4466-4474.1998     Document Type: Article

References (53)

1. Altenschmidt, U., and G. Fuchs. 1992. Purification and characterization of 2-aminobenzoate-CoA ligase, localization of the gene on a 8-kbp plasmid, and cloning and sequencing of the gene from a denitrifying Pseudomonas sp. Eur. J. Biochem. 205:721-727.
2. Altenschmidt, U., M. Bokranz, and G. Fuchs. 1992. Nucleotide sequence of the plasmid carrying the gene for the flavoprotein 2-aminobenzoate-CoA monooxygenase/reductase in a denitrifying Pseudomonas sp. Eur. J. Biochem. 207:715-722.
3. Altman, E. Unpublished observation.
4. Bertini, I., M. A. Cremonini, S. Ferretti, I. Lozzi, C. Luchinat, and M. S. Viezzoli. 1996. Arene hydroxylases: metalloenzymes catalysing dioxygenation of aromatic compounds. Coordination Chem. Rev. 151:145-160.
5. Bradford, M. M. 1976. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 72:248-254.
6. Butler, C. S., and J. R. Mason. 1997. Structure-function analysis of the bacterial aromatic ring-hydroxylating dioxygenases. Adv. Microb. Physiol. 38:47-84.
7. Collier, L. S., B. M. Bundy, and E. L. Neidle. Unpublished observation.
8. Collier, L. S., G. L. Gaines III, and E. L. Neidle. 1998. Regulation of benzoate degradation in Acinetobacter sp. strain ADP1 by BenM. a LysR-type transcriptional activator. J. Bacteriol. 180:2493-2501.
9. Collier, L. S., N. N. Nichols, and E. L. Neidle. 1997. benK encodes a hydrophobic permease-like protein involved in benzoate degradation by Acinetobacter sp. strain ADP1. J. Bacteriol. 179:5943-5946.
10. Danganan, C. E., R. W. Ye, D. L. Daubaras, L. Xun, and A. M. Chakrabarty. 1994. Nucleotide sequence and functional analysis of the genes encoding 2,4,5-trichlorophenoxyacetic acid oxygenase in Pseudomonas cepacia AC1100. Appl. Environ. Microbiol. 60:4100-4106.
11. Devereaux, J., P. Haeberli, and O. Smithies. 1984. A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res. 12:387-395.
12. Dijkshoorn, L. Personal communication.
13. Eraso, J. M., and S. Kaplan. 1994. prrA, a putative response regulator involved in oxygen regulation of photosynthetic gene expression in Rhodobacter sphaeroides. J. Bacteriol. 176:32-43.
14. Fetzner, S., R. Muller, and F. Lingens. 1992. Purification and some properties of 2-halobenzoate 1,2-dioxygenase, a two-component enzyme system from Pseudomonas cepacia 2CBS. J. Bacteriol. 174:279-290.
15. Gaines, G. L., III, L. Smith, and E. L. Neidle. 1996. Novel nuclear magnetic resonance spectroscopy methods demonstrate preferential carbon source utilization by Acinetobacter calcoaceticus. J. Bacteriol. 178:6833-6841.
16. Gallegos, M. T., C. Michan, and J. L. Ramos. 1993. The XylS/AraC family of regulators. Nucleic Acids Res. 21:807-810.
17. Gralton, E. M., A. L. Campbell, and E. L. Neidle. 1997. Directed introduction of DNA cleavage sites to produce a high-resolution genetic and physical map of the Acinetobacter sp. strain ADP1 (BD413UE) chromosome. Microbiology 143:1345-1357.
18. Gregg-Jolly, L. A., and L. N. Ornston. 1990. Recovery of DNA from the Acinetobacter calcoaceticus chromosome by gap repair. J. Bacteriol. 172: 6169-6172.
19. Haak, B., S. Fetzner, and F. Lingens. 1995. Cloning, nucleotide sequence, and expression of the plasmid-encoded genes for the two-component 2-halo-benzoate 1,2-dioxygenase from Pseudomonas cepacia 2CBS. J. Bacteriol. 177:667-675.
20. Harayama, S., M. Rekik, A. Bairoch, E. L. Neidle, and L. N. Ornston. 1991. Potential DNA slippage structures acquired during evolutionary divergence of Acinetobacter calcoaceticus chromosomal benABC and Pseudomonas putida TOL pWWO plasmid xylXYZ, genes encoding benzoate dioxygenases. J. Bacteriol. 173:7540-7548.
21. Harayama, S., M. Rekik, and K. N. Timmis. 1986. Genetic analysis of a relaxed substrate specificity aromatic ring dioxygenase, toluate 1,2-dioxygenase, encoded by TOL plasmid pWWO of Pseudomonas putida. Mol. Gen. Genet. 202:226-234.
22. Harwood, C. S., and R. E. Parales. 1996. The β-ketoadipate pathway and the biology of self-identity. Annu. Rev. Microbiol. 50:553-590.
23. Hayaishi, O., and R. Y. Stanier. 1951. The bacterial oxidation of tryptophan. III. Enzymatic activity of cell-free extracts from bacteria employing the aromatic pathway. J. Bacteriol. 62:691-709.
24. Juni, E. 1972. Interspecies transformation of Acinetobacter: genetic evidence for a ubiquitous genus. J. Bacteriol. 112:917-931.
25. Juni, E., and A. Janik. 1969. Transformation of Acinetobacter calcoaceticus (Bacterium anitratum). J. Bacteriol. 98:281-288.
26. Keen, T., S. Tamaki, D. Kobayashi, and D. Trollinger. 1988. Improved broad-host-range piasmids for DNA cloning in Gram-negative bacteria. Gene 70:191-197.
27. Kobayashi, S., and O. Hayaishi. 1970. Anthranilic acid conversion to catechol. Methods Enzymol. 17A:505-510.
28. 18 studies on anthranilate hydroxylase - a novel mechanism of double hydroxylation. Biochem. Biophys. Res. Commun. 16:556-561.
29. Kokotek, W., and W. Lotz. 1989. Construction of a lacZ-kanamycin-resistance cassette, useful for site-directed mutagenesis and as a promoter probe. Gene 84:467-471.
30. Miller, J. H. 1972. Experiments in molecular genetics. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
31. Nakatsu, C. H., M. Providenti, and R. C. Wyndham. 1997. The cis-diol dehydrogenase cbaC gene of Tn5271 is required for growth on 3-chlorobenzoate but not 3,4-dichlorobenzoate. Gene 196:209-218.
32. Neidle, E. L., and L. N. Ornston. 1986. Cloning and expression of Acinetobacter calcoaceticus catechol 1,2-dioxygenase structural gene catA in Escherichia coli. J. Bacteriol. 168:815-820.
33. Neidle, E. L., C. Hartnett, and L. N. Ornston. 1989. Characterization of Acinetobacter calcoaceticus catM, a repressor gene homologous in sequence to transcriptional activator genes. J. Bacteriol. 171:5410-5421.
34. Neidle, E., C. Hartnett, L. N. Ornston, A. Bairoch, M. Rekik, and S. Harayama. 1992. Cis-diol dehydrogenases encoded by the TOL pWW0 plasmid xylL gene and the Acinetobacter calcoaceticus chromosomal benD gene are members of the short-chain alcohol dehydrogenase superfamily. Eur. J. Biochem. 204:113-120.
35. Neidle, E. L., C. Hartnett, L. N. Ornston, A. Bairoch, M. Rekik, and S. Harayama. 1991. Nucleotide sequences of the Acinetobacter calcoaceticus benABC genes for benzoate 1,2-dioxygenase reveal evolutionary relationships among multicomponent oxygenases. J. Bacteriol. 173:5385-5395.
36. Parales, J. V., R. E. Parales, S. M. Resnick, and D. T. Gibson. 1998. Enzyme specificity of 2-nitrotoluene 2,3-dioxygenase from Pseudomonas sp. strain JS42 is determined by the C-terminal region of the a subunit of the oxygenase component. J. Bacteriol. 180:1194-1199.
37. Powlowski, J. B., S. Dagley, V. Massey, and D. P. Ballon. 1987. Properties of anthranilate hydroxylase (deaminating), a flavoprotein from Trichosporon cutaneum. J. Biol. Chem. 262:69-74.
38. Prentki, P., and H. M. Krisch. 1984. In vitro insertional mutagenesis with a selectable DNA fragment. Gene 29:303-313.
39. Rosche, B., B. Tshisuaka, B. Hauer, F. Lingens, and S. Fetzner. 1997. 2-Oxo-1,2-dihydroquinoline 8-monooxygenase: phylogenetic relationship to other multicomponent nonheme iron oxygenases. J. Bacteriol. 179:3549-3554.
40. Rosenberg, S. L., and G. D. Hegeman. 1971. Genetics of the mandelate pathway in Pseudomonas aeruginosa. J. Bacteriol. 108:1270-1276.
41. Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
42. Schirmer, F., S. Ehrt, and W. Hillen. 1997. Expression, inducer spectrum, domain structure, and function of MopR. the regulator of phenol degradation in Acinetobacter calcoaceticus NC1B8250. J. Bacteriol. 179:1329-1336.
43. Schoenlein, P. V., B. B. Roa, and M. E. Winkler. 1989. Divergent transcription of pdxB and homology between the pdxB and serA gene products in Escherichia coli K-12. J. Bacteriol. 171:6084-6092.
44. Shanley, M. S., E. L. Neidle, R. E. Parales, and L. N. Ornston. 1986. Cloning and expression of Acinetobacter calcoaceticus catBCDE genes in Pseudomonas putida and Escherichia coli. J. Bacteriol. 165:557-563.
45. Simon, R., U. Priefer, and A. Puhler. 1983. A broad host range mobilization system for in vivo genetic engineering: transposon mutagenesis in gram-negative bacteria. Biotechnology 1:37-45.
46. Studier, F. W., A. H. Rosenburg, J. J. Dunn, and J. W. Dubendorff. 1990. Use of T7 RNA polymerase to direct expression of cloned genes. Methods Enzymol. 185:60-89.
47. Tabor, S., and C. C. Richardson. 1985. A bacteriophage T7 RNA polymerase/promoter system for controlled exclusive expression of specific genes. Proc. Natl. Acad. Sci. USA 82:1074-1078.
48. Taniuchi, H., M. Hatanaka, S. Kuno, O. Hayaishi, M. Nakajima, and N. Kurihara. 1964. Enzymatic formation of catechol from anthranilic acid. J. Biol. Chem. 239:2204-2211.
49. Williams, P. A., and L. Shaw. 1997. mucK, a gene in Acinetobacter calcoaceticus ADP1 (BD413), encodes the ability to grow on exogenous cis, cis-muconate as the sole carbon source. J. Bacteriol. 179:5935-5942.
50. Yamaguchi, M., and H. Fujisawa. 1980. Purification and characterization of an oxygenase component in benzoate 1,2-dioxygenase system from Pseudomonas arvilla C-1. J. Biol. Chem. 255:5058-5063.
51. Yanisch-Perron, C., J. Vieira, and J. Messing. 1985. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene 33:103-119.
52. Zhang, C., and B. W. Holloway. 1992. Physical and genetic mapping of the catA region of Pseudomonas aeruginosa. J. Gen. Microbiol. 138:1097-1107.
53. Zhang, C., M. Huang, and B. W. Holloway. 1993. Mapping of ben genes of Pseudomonas aeruginosa. FEMS Microbiol. Lett. 112:255-260.