Eve and ftz regulate a wide array of genes in blastoderm embryos: The selector homeoproteins directly or indirectly regulate most genes in Drosophila

Development

Volumn 125, Issue 22, 1998, Pages 4471-4482

  Liang, Zicai ^a   Biggin, Mark D ^a  

^a YALE UNIVERSITY   (United States)

Author keywords

Drosophila melanogaster; Homeoproteins; Homeotic genes; Pair rule genes; Positional information

Indexed keywords

HOMEODOMAIN PROTEIN;

ARTICLE; BLASTODERM; DEVELOPMENTAL GENETICS; DROSOPHILA MELANOGASTER; EMBRYO DEVELOPMENT; HOMEOBOX; NONHUMAN; PRIORITY JOURNAL;

ACTINS; ALCOHOL DEHYDROGENASE; ANIMALS; BACTERIAL PROTEINS; BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTORS; BLASTODERM; BODY PATTERNING; DNA-BINDING PROTEINS; DROSOPHILA; DROSOPHILA PROTEINS; FUSHI TARAZU TRANSCRIPTION FACTORS; GENE EXPRESSION REGULATION, DEVELOPMENTAL; HOMEODOMAIN PROTEINS; HSP70 HEAT-SHOCK PROTEINS; INSECT PROTEINS; MEMBRANE GLYCOPROTEINS; PROTEOGLYCANS; REPRESSOR PROTEINS; TRANSCRIPTION FACTORS;

ARACHNIDA; DROSOPHILA MELANOGASTER; EUMETAZOA; HEXAPODA; MELANOGASTER;

EID: 0031675549     PISSN: 09501991     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (58)

1. A nderson, K. V. and Lengyel, J. A. (1981). Changing rates of DNA and RNA synthesis in Drosophila embryos. Dev. Biol. 82, 127-138.
2. Ashburner, M. (1989). Drosophila a laboratory handbook. Cold Spring Harbor, New York, USA: Cold Spring Harbor Laboratory Press.
3. Bellen, H. J., O'Kane, C. J., Wilson, C., Grossniklaus, U., Pearson, R. K. and Gehring, W. (1989) P-element-mediated enhancer detection: a versatile method to study develoment in Drosophila. Genes Dev 3, 1288-1300.
4. Bienz, M. and Hart, K. (1996). A test for cell autonomy, based on di-cistronic messenger translation. Development 122, 747-751.
5. Biggin, M. D. and Tjian, R. (1989). A purified Drosophila homeodomain protein represses transcription in vitro. Cell 58, 433-440.
6. Biggin, M. D. and McGinnis, W. (1997). Regulation of segmentation and segmental identity by Dromophila homeoproteins: the role of DNA binding in functional activity and specificity. Development 124, 4425-4433.
7. Biggin, M. D. (1998). A UV crosslinking assay that measures sequence specific DNA binding in vivo. Methods in Enzymology, (in press).
8. Botas, J. and Auwers, L. (1996). Chromosomal binding sites of Ultrabithorax homeotic proteins. Mech. Dev. 56, 129-138.
9. Brennen S., Dove, W., Herskowitz, I. and Thomas, R. (1990). Genes and development: molecular and logical themes. Genetics 126, 479-486.
10. Brown, N. H. and Kafatos, F. C. (1988). Functional cDNA libraries from Drosophila embryos. J. Mol Biol. 203, 425-437.
11. Bulfield, G. (1972). Gentic control of metabolism: enzyme studies of the obese and adipose mutants in the mouse. Genet. Res., Camb. 20, 51-64.
12. Burn, T. C., Vigoreaux, J. O. and Tobin, S. L. (1989). Alternative 5C actin transcripts are localized in different patterns during drosophila embryogenesis. Dev. Biol. 131, 345-355.
13. Burglin, T. R. (1994). A comprehensive classification of homeobox genes. In Guidebook to the Homeobox Genes, pp. 27-269. Oxford, England: Oxford University Press.
14. Campos-Ortega, J. A. and Hartenstein, V. (1997). The Embryonic Development of Drosophila melanogaster. Second edition. Berlin. Germany: Springer-Verlag.
15. Carroll, S. B. (1995). Homeotic genes and the evolution of the arthropods and chordutes. Nature 376, 479-485.
16. Castelli-Gair, J., Greig, S., Micklem, G. and Akam, M. (1994). Dissecting the temporal requirements for homeotic gene function. Development 120, 1983-1995.
17. Chan, S. K., Ryoo, H. D., Gould, A., Krumlauf, R. and Mann, R. S. (1997). Switching the in vivo specificity of a minimal Hox-responsive element. Development 124, 2007-2014.
18. Fell, D. (1997). Understanding the Control of Metabolism. Frontiers in metabolism 2. Series Ed. Keith Snell, London, England: Portland Press.
19. Frasch, M., Warrior, R., Tugwood, J. and Levine, M. (1988). Molecular analysis of even-skipped mutants in Drosophila development. Genes Dev. 2, 1825-1838.
20. Fyrberg, E. A., Kindle, K. K. and Davidson, N. (1980). The actin genes of Drosophila: a dispersed multigene family. Cell 19, 365-378.
21. Garcia-Bellido, A. G. (1975). Genetic control of wing disk development in Drosophila. In Cell Patterning. Ciba Found. Symp. 29, 161-178.
22. Goldberg, D. A., Posakony, J. W. and Maniatis, T. (1983). Correct developmental expression of a cloned alcohol dehydrogenase gene transduced into the Drosophila germ line. Cell 34, 59-73.
23. Golzalez-Gratain, M., Capdevila, M. P. and Garcia-Bellido, A. (1994). Cell proliferation patterns in the wing imaginai disc of Drosophila. Mech. Dev. 40, 183-200.
24. Gonzalez-Reyes, A. and Morata, G. (1990). The developmental effect of overexpressing a Ubx product in Drosophila embryos is depedent on its interaction with other homeotic products. Cell 61, 515-522.
25. Graba, Y., Arugnol, D. and Pradel, J. (1997). Drosophila Hox complex downstream genes and the function of homeolic genes. BioEssays 19, 379-388.
26. Heberline, U., England, B. and Tjian, R. (1985). Charecterization of Drosophila transcription factors that activate the tandem promoters of the alcohol dehydrogenaase gene. Cell 41, 965-977.
27. Hiromi, Y. and Gehring, W. J. (1987). Regulation and function of the Drosophila segmentation gene fushi tarazu. Cell 50, 963-974.
28. Jiang, J., Hoey, T. and Levine, M. (1991). Autoregulution of a segmentation gene in Drosophila: combinitorial interaction of the even-skipped homeo box protein with a distal enhancer element. Genes Dev. 5, 265-277.
29. Karr, T. L., Weir, M. P. Ali, Z. Kornberg, T. (1989). Patterns of engrailed protein in early Drosophila embryos. Development 105, 605-612.
30. Kacser, H., Burns, J. A. and Fell, D. (1995). The control of flux: 21 years on. Biochem. Soc. Trans. 23, 341-366.
31. Kuhn, K., Streit, B. and Schierwater, B. (1996). Homeobox genes in the Cnidarian Eleutheria dichotoma: Evolutionary implications of the origin of Antennapedia-Class (HOM/Hox) genes. Mol. Phylogen. Evol. 6, 30-38.
32. Luney, J. D. and Biggin, M. D. (1996). Redundant control of Ultrabithorax by zeste involves functional levels of zeste protein binding at the Ultrabithorax promoter. Development 122, 2303-2311.
33. Lawrence, P. A. (1992). The Making of a Fly. England: Blackwell Scientific Publications.
34. Lidsley, D. L. et. al. (1972). Segmental aneuploidy and the genetic gross structure of the Drosophila genome. Genetics 71, 157-184.
35. Lis, J. T., Simon, J. A. and Sutton, C. A. (1983). New heat shock puffs and β-galactosidase activity resulting from transformation of Drosophila with an hsp70-lacZ hybrid gene. Cell 35, 403-410.
36. Mann, R. S. and Chan, S.-K. (1996). Extra specificity from extradenticle: the partnership between HOX and PBX/EXD homeodomain proteins. Trends Genet. 12, 258-262.
37. Manoukian, A. S. and Krause, H. M. (1992). Concentration dependent activities of the even-skipped protein in Drosophila embryos. Genes Dev. 6, 1740-1751.
38. Martinez-Arias, A. and White, R. A. W. (1988). Ultrabithorax and engrailed expression in Drosophila embryos mutant for segmentation genes of the pair-rule class. Development 102, 325-338.
39. Mastick, G. S., McKay, R., Oligino, T., Donovan, K. and Lopez, A. J. (1995). Identification of target genes regulated by homeotic proteins in Drosophila melanogaster through genetic selection of Ultrabithorax protein-binding sites in yeast. Genetics 139, 349-363.
40. Miklos, G. L. and Ruhin, G. M. (1996). The role of the genome project in determining gene function: insights from model organisms. Cell 86, 521-529.
41. Perrimon, N., Lanjuin, A., Arnold, C. and Noll, E. (1996). Zygotic lethal mutations with maternal effect phenotypes in Drosophila melanogaster. II. Loci on the second and third chromosomes identified by P-element-induced mutations. Genetics 144, 1681-1692.
42. Postlethwait, J. H. (1978). Clonal analysis of Drosophila cuticular patterns. in The Genetics and Biology of Drosophila vol. 2c (ed. M. Ashburner, and T. R. F. Wright), pp. 359-441. London. UK: Academic Press.
43. Raff, R. A. (1996). The Shape of Life: Genes, Development and the Evolution of Animal Form. Chicago, USA: The University of Chicago Press.
44. Rougvie, A. E. and Lis, J. T. (1988). The RNA polymerase molecule at the 5′ end of the uninduced hsp70 gene of D. melanogaster is transcriptionally engaged. Cell 54, 795-804.
45. Ryan, A. K. and Rosenfeld, M. G. (1997). POU domain family values: flexibility, partnerships, and developmental codes. Genes Dev. 11, 1207-1225.
46. Saenz-Robles, M. T., Maschat, F., Tabata, T., Scott, M. P. and Kornberg, T. B. (1995). Selection and charecterization of sequences with high affinity for the engrailed protein of Drosophila. Mech. Dev. 53, 185-195.
47. Savakis, C., Ashburner, M. and Willis, J. H. (1986). The expression of the gene encoding alcohol dehydogenase during the development of Drosophila melanogaster. Dev. Biol. 114, 194-207.
48. Schmid, K. J. and Tautz, D. (1997). A screen for fast evolving genes from Drusophila. Proc. Natl. Acad. Sci. USA 94, 9746-9750.
49. Serrano, N., Brock, H. W., Demeret, C., Dura, J. -M., Randsholt, N. B., Kornberg, T. B. and Muschat, F. (1995). polyhomeotic appears to be a target of engrailed regulation in Drosophila. Development 121, 1691-1703.
50. Simon, M. A., Bowtell, D. D., Dodson, G. S., Laverty, T. K. and Rubin, G. M. (1991). Ras1 and a putative guanine nucleotide exchange factor perform crucial steps in signaling by the sevenless protein tyrosine kinase. Cell 67, 701-716.
51. Tautz, D. and Pfeifle, C. (1989). A non-radioactive in situ hybridization method for the localization of specific RNAs in Drosophila embryos reveals translational control of the segmentation gene hunchback. Chromosoma 98, 81-85.
52. Tautz, D. (1992). Redundancies, development and the flow of information. BioEssays 14, 263-266.
53. TenHarmsel, A., Austin, R. J., Savenelli, N. and Biggin, M. D. (1993). Cooperative binding at a distance by even-skipped protein correlates with repression and suggests a mechanism of silencing. Mol. Cell Biol. 13, 2742-2752.
54. Wagner-Bernholz, J. T., Wilson, C., Gibson, G., Schuh, R. and Gehring, W. J. (1991). Identification of target genes of the homeotic gene Antennapedia by enhancer detection. Genes Dev. 5, 2467-2480.
55. Walter, J., Dever, C. and Biggin, M. D. (1994). Two homeodomain proteins bind with similar specificity to a wide range of DNA sites in Drosophila embryos. Genes Dev. 8, 1678-1692
56. Walter, J. and Biggin, M. D. (1996). DNA binding specificity of two homeodomain proteins in vitro and in Drosophila embryos. Proc. Natl. Acad. Sci. USA 93, 6680-2685.
57. Weintraub, H. (1993). The MyoD family and myogenesis: redundancy, networks and thresholds. Cell 75, 1241-1244.
58. Wolpert, L. (1991). The Triumph of the Embryo. Oxford, England: Oxford University Press.