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Volumn 5, Issue 9, 1997, Pages 1231-1247

Solution structure and base pair opening kinetics of the i-motif dimer of d(5mCCTTTACC): A noncanonical structure with possible roles in chromosome stability22

Author keywords

Hydration; I motif; Proton exchange; Solution structure; Telomere

Indexed keywords

EUKARYOTA;

EID: 0031572186     PISSN: 09692126     EISSN: None     Source Type: Journal    
DOI: 10.1016/s0969-2126(97)00273-6     Document Type: Article
Times cited : (43)

References (53)
  • 1
    • 0026591751 scopus 로고
    • Crystal structure of four-stranded Oxytricha telomeric DNA
    • Kang, C., Zhang, X., Ratliff, R., Moyzis, R. & Rich, A. (1992). Crystal structure of four-stranded Oxytricha telomeric DNA. Nature 356, 126-131.
    • (1992) Nature , vol.356 , pp. 126-131
    • Kang, C.1    Zhang, X.2    Ratliff, R.3    Moyzis, R.4    Rich, A.5
  • 3
    • 0029645583 scopus 로고
    • Solution structures of unimolecular quadruplexes formed by oligonucleotides containing Oxytrichia telomere repeats
    • Smith, F.W., Schultze, P. & Feigon, J. (1995). Solution structures of unimolecular quadruplexes formed by oligonucleotides containing Oxytrichia telomere repeats. Structure 3, 997-1008.
    • (1995) Structure , vol.3 , pp. 997-1008
    • Smith, F.W.1    Schultze, P.2    Feigon, J.3
  • 4
    • 0025877846 scopus 로고
    • Inhibition of telomerase by G-quartet DNA structure
    • Zahler, A.M., Williamson, J.R., Cech, T.R. & Prescott, D.M. (1991). Inhibition of telomerase by G-quartet DNA structure. Nature 350, 718-720.
    • (1991) Nature , vol.350 , pp. 718-720
    • Zahler, A.M.1    Williamson, J.R.2    Cech, T.R.3    Prescott, D.M.4
  • 6
    • 0028364089 scopus 로고
    • Intramolecular folding of a fragment of the cytosine-rich strand of telomeric DNA into an i-motif
    • Leroy, J.L., Guéron, M., Mergny, J.L. & Hélène, C. (1994). Intramolecular folding of a fragment of the cytosine-rich strand of telomeric DNA into an i-motif. Nucleic Acids Res. 22, 1600-1606.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 1600-1606
    • Leroy, J.L.1    Guéron, M.2    Mergny, J.L.3    Hélène, C.4
  • 7
    • 0001404315 scopus 로고
    • Molecular structure of helical polycytidylic acid
    • Langridge, R. & Rich, A. (1963). Molecular structure of helical polycytidylic acid. Nature 198, 725-728.
    • (1963) Nature , vol.198 , pp. 725-728
    • Langridge, R.1    Rich, A.2
  • 8
    • 0000652494 scopus 로고
    • The tautomeric form of helical polyribocytidylic acid
    • Hartman, K.A., Jr. & Rich, A.J. (1965). The tautomeric form of helical polyribocytidylic acid. J. Am. Chem. Soc. 87, 2033-2039.
    • (1965) J. Am. Chem. Soc. , vol.87 , pp. 2033-2039
    • Hartman Jr., K.A.1    Rich, A.J.2
  • 9
    • 0027278767 scopus 로고
    • A tetrameric DNA structure with protonated cytidine-cytidine base pairs
    • Gehring, K., Leroy, J.L. & Guéron, M. (1993). A tetrameric DNA structure with protonated cytidine-cytidine base pairs. Nature 363, 561-565.
    • (1993) Nature , vol.363 , pp. 561-565
    • Gehring, K.1    Leroy, J.L.2    Guéron, M.3
  • 11
    • 0029001614 scopus 로고
    • Stable loop in the crystal structure of the intercalated four-stranded cytosine-rich metazoan telomer
    • Kang, C., Berger, I., Lockshin, C., Ratliff, R., Moyzis, R. & Rich, A. (1995). Stable loop in the crystal structure of the intercalated four-stranded cytosine-rich metazoan telomer. Proc. Natl. Acad. Sci. USA 92, 3874-3878.
    • (1995) Proc. Natl. Acad. Sci. USA , vol.92 , pp. 3874-3878
    • Kang, C.1    Berger, I.2    Lockshin, C.3    Ratliff, R.4    Moyzis, R.5    Rich, A.6
  • 12
    • 0029032852 scopus 로고
    • Extension of the four-stranded intercalated cytosine motif by adenine-adenine base-pairing in the crystal structure of d(CCCAAT)
    • Berger, I., Kang, C., Fredian, A., Ratliff, R., Moyziz, R. & Rich, A. (1995). Extension of the four-stranded intercalated cytosine motif by adenine-adenine base-pairing in the crystal structure of d(CCCAAT). Nat. Struct. Biol. 2, 416-425.
    • (1995) Nat. Struct. Biol. , vol.2 , pp. 416-425
    • Berger, I.1    Kang, C.2    Fredian, A.3    Ratliff, R.4    Moyziz, R.5    Rich, A.6
  • 13
    • 0029643792 scopus 로고
    • Solution structure of the i-motif tetramers of d(TCC), d(5methylCCT) and d(T5methylCC): Novel NOE connection between amino protons and sugar protons
    • Leroy, J.L. & Guéron, M. (1995). Solution structure of the i-motif tetramers of d(TCC), d(5methylCCT) and d(T5methylCC): novel NOE connection between amino protons and sugar protons. Structure 3, 101-120.
    • (1995) Structure , vol.3 , pp. 101-120
    • Leroy, J.L.1    Guéron, M.2
  • 14
    • 0027960095 scopus 로고
    • Oligocytidine regions contained in DNA hairpin loops interact via a four-stranded, parallel structure similar to the i-motif
    • Rohozinski, J., Hancock, J.M. & Keniry, M.A. (1994). Oligocytidine regions contained in DNA hairpin loops interact via a four-stranded, parallel structure similar to the i-motif. Nucleic Acids Res. 22, 4653-4659.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4653-4659
    • Rohozinski, J.1    Hancock, J.M.2    Keniry, M.A.3
  • 15
    • 0029082563 scopus 로고
    • Intramolecular folding of pyrimidine oligodeoxynucleotides into an i-motif
    • Mergny, J.L., Lacroix, L., Han, X., Leroy, J.L. & Hélène, C. (1995). Intramolecular folding of pyrimidine oligodeoxynucleotides into an i-motif. J. Am. Chem. Soc. 117, 8887-8898.
    • (1995) J. Am. Chem. Soc. , vol.117 , pp. 8887-8898
    • Mergny, J.L.1    Lacroix, L.2    Han, X.3    Leroy, J.L.4    Hélène, C.5
  • 17
    • 0027159426 scopus 로고
    • Acid multimers of oligo-cytidine strands: Stoichiometry, base-pair characterization and proton exchange properties
    • Leroy, J.L., Gehring, K., Kettani, A. & Guéron, M. (1993). Acid multimers of oligo-cytidine strands: stoichiometry, base-pair characterization and proton exchange properties. Biochemistry 3, 6019-6031.
    • (1993) Biochemistry , vol.3 , pp. 6019-6031
    • Leroy, J.L.1    Gehring, K.2    Kettani, A.3    Guéron, M.4
  • 18
    • 0028907436 scopus 로고
    • Calculation of protein structures with ambiguous distance restraints; automated assignment of ambiguous NOE cross peaks and disulphide connectivities
    • Nilges, M. (1995). Calculation of protein structures with ambiguous distance restraints; automated assignment of ambiguous NOE cross peaks and disulphide connectivities. J. Mol. Biol. 245, 645-660.
    • (1995) J. Mol. Biol. , vol.245 , pp. 645-660
    • Nilges, M.1
  • 19
    • 0026326956 scopus 로고
    • Protein hydration in aquous solution
    • Otting, G., Liepinsh, E. & Wüthrich, K. (1991). Protein hydration in aquous solution. Science 254, 974-980.
    • (1991) Science , vol.254 , pp. 974-980
    • Otting, G.1    Liepinsh, E.2    Wüthrich, K.3
  • 20
    • 0027058824 scopus 로고
    • NMR observation of individual molecules of hydration water bound to DNA duplexes: Direct evidence for a spine of hydration water present in aqueous solution
    • Liepinsh, E., Otting, G. & Wütrich, K. (1992). NMR observation of individual molecules of hydration water bound to DNA duplexes: direct evidence for a spine of hydration water present in aqueous solution. Nucleic Acids Res. 20, 6549-6553.
    • (1992) Nucleic Acids Res. , vol.20 , pp. 6549-6553
    • Liepinsh, E.1    Otting, G.2    Wütrich, K.3
  • 21
    • 0000235752 scopus 로고
    • NMR evidence for DNA bound water in solution
    • Kubinec, M.G. & Wemmer, D. (1992). NMR evidence for DNA bound water in solution. J. Am. Chem. Soc. 114, 8739-8740.
    • (1992) J. Am. Chem. Soc. , vol.114 , pp. 8739-8740
    • Kubinec, M.G.1    Wemmer, D.2
  • 23
    • 0023256126 scopus 로고
    • A single mode of DNA base-pair opening drives imino proton exchange
    • Guéron, M., Kochoyan, M. & Leroy, J.L. (1987). A single mode of DNA base-pair opening drives imino proton exchange. Nature 382, 89-92.
    • (1987) Nature , vol.382 , pp. 89-92
    • Guéron, M.1    Kochoyan, M.2    Leroy, J.L.3
  • 24
    • 0029120978 scopus 로고
    • Terminal base pair of oligodeoxynucleotides: Imino proton exchange and fraying
    • Nonin, S., Leroy, J.L. & Guéron, M. (1995). Terminal base pair of oligodeoxynucleotides: imino proton exchange and fraying. Biochemistry 34, 10652-10659.
    • (1995) Biochemistry , vol.34 , pp. 10652-10659
    • Nonin, S.1    Leroy, J.L.2    Guéron, M.3
  • 25
    • 0029585993 scopus 로고
    • Solution structure of a DNA quadruplet containing the fragile X syndrome triplet repeat
    • Kettani, A., Kumar, A. & Patel, D.J. (1995). Solution structure of a DNA quadruplet containing the fragile X syndrome triplet repeat. J. Mol. Biol. 254, 638-656.
    • (1995) J. Mol. Biol. , vol.254 , pp. 638-656
    • Kettani, A.1    Kumar, A.2    Patel, D.J.3
  • 27
    • 0025734548 scopus 로고
    • The three-dimensional structure of a DNA hairpin in solution. Two dimensional NMR studies and structural analysis of d(ATCCTATTTATAGGAT)
    • Blommers, M.J.J., van de Ven, F.J.M., van der Marel, G.A., van Boom, J.H. & Hilbers, C.W. (1991). The three-dimensional structure of a DNA hairpin in solution. Two dimensional NMR studies and structural analysis of d(ATCCTATTTATAGGAT). Eur. J. Biochem. 201, 33-51.
    • (1991) Eur. J. Biochem. , vol.201 , pp. 33-51
    • Blommers, M.J.J.1    Van De Ven, F.J.M.2    Van Der Marel, G.A.3    Van Boom, J.H.4    Hilbers, C.W.5
  • 28
    • 0028146180 scopus 로고
    • DNA sequence GCGAATGAGC containing the human centromere core sequence GAAT forms a self-complementary duplex with sheared G·A pairs in solution
    • Chou, S.H., Cheng, J-W., Fedoroff, O. & Reid, B.R. (1994). DNA sequence GCGAATGAGC containing the human centromere core sequence GAAT forms a self-complementary duplex with sheared G·A pairs in solution. J. Mol. Biol. 241, 467-479.
    • (1994) J. Mol. Biol. , vol.241 , pp. 467-479
    • Chou, S.H.1    Cheng, J.-W.2    Fedoroff, O.3    Reid, B.R.4
  • 30
    • 0023788886 scopus 로고
    • Formation of parallel four-stranded complexes by guanine-rich motifs in DNA and its implications for meiosis
    • Sen, D. & Gilbert, W. (1988). Formation of parallel four-stranded complexes by guanine-rich motifs in DNA and its implications for meiosis. Nature 334, 364-366.
    • (1988) Nature , vol.334 , pp. 364-366
    • Sen, D.1    Gilbert, W.2
  • 31
    • 0027407146 scopus 로고
    • A hot-spot of recombination coincides with an interstitial telomeric sequence in the Armenian hamster
    • Ashley, T. & Ward, D.C. (1993). A hot-spot of recombination coincides with an interstitial telomeric sequence in the Armenian hamster. Cytogenet. Cell Genet. 62, 169-171.
    • (1993) Cytogenet. Cell Genet. , vol.62 , pp. 169-171
    • Ashley, T.1    Ward, D.C.2
  • 32
    • 0026599251 scopus 로고
    • Interstitial telomers are hot spots for illegitimate recombination with DNA molecules injected into the macronucleus of Paramecium primaurelia
    • Katinka, M.D. & Bourgain, F.M. (1992). Interstitial telomers are hot spots for illegitimate recombination with DNA molecules injected into the macronucleus of Paramecium primaurelia. EMBO J. 11, 725-732.
    • (1992) EMBO J. , vol.11 , pp. 725-732
    • Katinka, M.D.1    Bourgain, F.M.2
  • 33
    • 0024959479 scopus 로고
    • Recombination occurs during telomere formation in yeast
    • Pluta, A.F. & Zakian, V.A. (1989). Recombination occurs during telomere formation in yeast. Nature 337, 429-433.
    • (1989) Nature , vol.337 , pp. 429-433
    • Pluta, A.F.1    Zakian, V.A.2
  • 34
    • 0027412191 scopus 로고
    • QUAD, a protein from hepatocyte domain chromatin that binds selectively to guanine-rich quadruplex DNA
    • Weisman-Shomer, P. & Fry, M. (1993). QUAD, a protein from hepatocyte domain chromatin that binds selectively to guanine-rich quadruplex DNA. J. Biol. Chem. 268, 3306-3312.
    • (1993) J. Biol. Chem. , vol.268 , pp. 3306-3312
    • Weisman-Shomer, P.1    Fry, M.2
  • 35
    • 0028174644 scopus 로고
    • A protein from Tetrahymena thermophila that specifically binds parallel-stranded G4-DNA
    • Schierer, T. & Henderson, E. (1994). A protein from Tetrahymena thermophila that specifically binds parallel-stranded G4-DNA. Biochemistry 33, 2240-2246.
    • (1994) Biochemistry , vol.33 , pp. 2240-2246
    • Schierer, T.1    Henderson, E.2
  • 36
    • 0030765180 scopus 로고    scopus 로고
    • The SV40 large T-antigen helicase can unwind four-stranded DNA structures linked by G-quartets
    • Baran, N., Pucshansky, L., Marco, Y., Benjamin, S. & Manor, H. (1997). The SV40 large T-antigen helicase can unwind four-stranded DNA structures linked by G-quartets. Nucleic Acids Res. 25, 297-303.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 297-303
    • Baran, N.1    Pucshansky, L.2    Marco, Y.3    Benjamin, S.4    Manor, H.5
  • 37
    • 0028246339 scopus 로고
    • The yeast telomer-binding protein RAP1 binds to and promotes the formation of DNA quadruplexes in telomeric DNA
    • Giraldo, R. & Rhodes, D. (1994). The yeast telomer-binding protein RAP1 binds to and promotes the formation of DNA quadruplexes in telomeric DNA. EMBO J. 13, 2411-2420.
    • (1994) EMBO J. , vol.13 , pp. 2411-2420
    • Giraldo, R.1    Rhodes, D.2
  • 38
    • 0028146763 scopus 로고
    • Promotion of parallel DNA quadruplexes by a yeast telomer binding protein: A circular dichroism study
    • Giraldo, R., Suzuki, M., Chapman, L. & Rhodes, D. (1994). Promotion of parallel DNA quadruplexes by a yeast telomer binding protein: a circular dichroism study. Proc. Natl. Acad. Sci. USA 41, 7658-7662.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.41 , pp. 7658-7662
    • Giraldo, R.1    Suzuki, M.2    Chapman, L.3    Rhodes, D.4
  • 39
    • 0029805197 scopus 로고    scopus 로고
    • Evidence for a HeLa nuclear protein that binds specifically to the single stranded d(CCCTAA)n telomeric motif
    • Marsich, E., Piccini, A., Xodo, L.E. & Manzini, G. (1996). Evidence for a HeLa nuclear protein that binds specifically to the single stranded d(CCCTAA)n telomeric motif. Nucleic Acids Res. 24, 4029-4033.
    • (1996) Nucleic Acids Res. , vol.24 , pp. 4029-4033
    • Marsich, E.1    Piccini, A.2    Xodo, L.E.3    Manzini, G.4
  • 40
    • 0014725117 scopus 로고
    • Oligonucleotide interactions. III. Circular dichroism studies of the conformation of deoxyoligonucleotides
    • Cantor, C.R. & Warshaw, M.M. (1970). Oligonucleotide interactions. III. Circular dichroism studies of the conformation of deoxyoligonucleotides. Biopolymers 9, 1059-1077.
    • (1970) Biopolymers , vol.9 , pp. 1059-1077
    • Cantor, C.R.1    Warshaw, M.M.2
  • 41
    • 33845555707 scopus 로고
    • Exchangeable proton NMR without base-line distortion
    • Plateau, P. & Guéron, M. (1982). Exchangeable proton NMR without base-line distortion. J. Am. Chem. Soc. 104, 7310-7311.
    • (1982) J. Am. Chem. Soc. , vol.104 , pp. 7310-7311
    • Plateau, P.1    Guéron, M.2
  • 42
    • 2642628181 scopus 로고
    • A two-dimensional nuclear Overhauser experiment with pure absorption phase in four quadrants
    • States, D.J., Haberkorn, R.A. & Reuben, D.J. (1982). A two-dimensional nuclear Overhauser experiment with pure absorption phase in four quadrants. J. Magn. Reson. 48, 286-292.
    • (1982) J. Magn. Reson. , vol.48 , pp. 286-292
    • States, D.J.1    Haberkorn, R.A.2    Reuben, D.J.3
  • 43
    • 5144233105 scopus 로고
    • MLEV-17 based two-dimensional homonuclear magnetization transfer spectroscopy
    • Bax, A. & Davis, D.G. (1985). MLEV-17 based two-dimensional homonuclear magnetization transfer spectroscopy. J. Magn. Reson. 65, 355-360.
    • (1985) J. Magn. Reson. , vol.65 , pp. 355-360
    • Bax, A.1    Davis, D.G.2
  • 44
    • 0001072647 scopus 로고
    • Selective excitation of water signal by a Q-switched selective pulse
    • Otting, G. & Liepinsh, E. (1995). Selective excitation of water signal by a Q-switched selective pulse. J. Magn. Reson. B 107, 192-196.
    • (1995) J. Magn. Reson. B , vol.107 , pp. 192-196
    • Otting, G.1    Liepinsh, E.2
  • 45
    • 0029693096 scopus 로고    scopus 로고
    • Separation of intramolecular NOE and exchange peaks in water exchange spectroscopy using spin-echo filters
    • Mori, S., Berg, J.M. & van Zijl, P.C.M. (1996). Separation of intramolecular NOE and exchange peaks in water exchange spectroscopy using spin-echo filters. J. Biomol. NMR 7, 77-82.
    • (1996) J. Biomol. NMR , vol.7 , pp. 77-82
    • Mori, S.1    Berg, J.M.2    Van Zijl, P.C.M.3
  • 46
    • 0000569181 scopus 로고
    • Separation of cross-relaxation and J cross-peaks in 2D rotating-frame NMR spectroscopy
    • Kessler, H., Greisinger, C., Kerssebaum, R., Wagner, K. & Ernst, R.R. (1987). Separation of cross-relaxation and J cross-peaks in 2D rotating-frame NMR spectroscopy. J. Am. Chem. Soc. 109, 607-609.
    • (1987) J. Am. Chem. Soc. , vol.109 , pp. 607-609
    • Kessler, H.1    Greisinger, C.2    Kerssebaum, R.3    Wagner, K.4    Ernst, R.R.5
  • 47
    • 0542406119 scopus 로고
    • Selective excitation techniques in Fourrier transform NMR
    • Morris, G.A. & Freeman, R. (1978). Selective excitation techniques in Fourrier transform NMR. J. Magn. Reson. 29, 433-462.
    • (1978) J. Magn. Reson. , vol.29 , pp. 433-462
    • Morris, G.A.1    Freeman, R.2
  • 48
    • 0026389037 scopus 로고
    • Solvent signal suppression in NMR
    • (Emsley, J.W., Feeney, J. & Sutcliffe, L.H., eds.) Pergamon Press, Oxford, UK
    • Guéron, M. Plateau, P. & Decorps, M. (1991). Solvent signal suppression in NMR. In Progress in NMR Spectroscopy. (Emsley, J.W., Feeney, J. & Sutcliffe, L.H., eds.), pp. 135-209, 23, Pergamon Press, Oxford, UK.
    • (1991) Progress in NMR Spectroscopy , vol.23 , pp. 135-209
    • Guéron, M.1    Plateau, P.2    Decorps, M.3
  • 49
    • 0000617764 scopus 로고
    • Data shift accumulation and alternate delay accumulation techniques for overcoming the dynamic range problem
    • Roth, K., Kimber, B.J. & Feeney, J. (1980). Data shift accumulation and alternate delay accumulation techniques for overcoming the dynamic range problem. J. Magn. Reson. 41, 302-309.
    • (1980) J. Magn. Reson. , vol.41 , pp. 302-309
    • Roth, K.1    Kimber, B.J.2    Feeney, J.3
  • 50
    • 0001957353 scopus 로고
    • Proton transfer, acid-base catalysis, and enzymatic hydrolysis. Part I: Elementary processes
    • Eigen, M. (1964). Proton transfer, acid-base catalysis, and enzymatic hydrolysis. Part I: elementary processes. Angew. Chem. 3, 1-19.
    • (1964) Angew. Chem. , vol.3 , pp. 1-19
    • Eigen, M.1
  • 51
    • 0028864424 scopus 로고    scopus 로고
    • Studies of base pair kinetics by NMR measurement of proton exchange
    • Guéron, M. & Leroy, J.L. (1996). Studies of base pair kinetics by NMR measurement of proton exchange. Methods Enzymol. 261, 383-413.
    • (1996) Methods Enzymol. , vol.261 , pp. 383-413
    • Guéron, M.1    Leroy, J.L.2
  • 52
    • 0029939203 scopus 로고    scopus 로고
    • The acid-catalysed imino proton exchange of G·C Watson-Crick base pairs
    • Nonin, S., Leroy, J.L. & Guéron, M. (1996). The acid-catalysed imino proton exchange of G·C Watson-Crick base pairs. Nucleic Acids Res. 24, 586-595.
    • (1996) Nucleic Acids Res. , vol.24 , pp. 586-595
    • Nonin, S.1    Leroy, J.L.2    Guéron, M.3


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