Water molecule binding and lifetimes on the DNA duplex d(CGCGAATTCGCG)2

Journal of Biomolecular NMR

Volumn 8, Issue 1, 1996, Pages 77-86

  Zhou, Dawei ^a   Bryant, Robert G ^a  

^a UNIVERSITY OF VIRGINIA   (United States)

Author keywords

d(CGCGAATTCGCG)2; DNA binding; DNA dodecamer; Water; Water DNA lifetimes

Indexed keywords

DNA; WATER;

ARTICLE; BINDING SITE; DNA SEQUENCE; METABOLISM; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY;

BINDING SITES; DNA; MAGNETIC RESONANCE SPECTROSCOPY; SEQUENCE ANALYSIS, DNA; WATER;

EID: 0030183170     PISSN: 09252738     EISSN: None     Source Type: Journal    
DOI: 10.1007/BF00198141     Document Type: Article

References (62)

1. Cole, K.S. and Cole, R.H. (1941) J. Chem. Phys., 9, 341-351.
2. Dickerson, R.E. and Drew, H.R. (1981) J. Mol. Biol., 149, 761-786.
3. Drew, H.R., Wing, R.M., Takano, T., Broka, C., Tanaka, S., Itakura, K. and Dickerson, R.E. (1981) Proc. Natl. Acad. Sci. USA, 18, 2179-2183.
4. Drew, H.R., Samson, S. and Dickerson, R.E. (1982) Proc. Natl. Acad. Sci. USA, 79, 4040-4044.
5. Edwards, K.J., Brown, D.J., Spink, N., Skelly, J.V. and Neidle, S. (1992) J. Mol. Biol., 226, 1161-1173.
6. Edzes, H.T. and Samulski, E.T. (1977) Nature, 265, 521-523.
7. Edzes, H.T. and Samulski, E.T. (1978) J. Magn. Reson., 31, 207-229.
8. Eimer, W., Williamson, J.R., Boxer, S.G. and Pecora, R. (1990) Biochemistry, 29, 799-811.
9. Eisenstadt, M. (1980) J. Magn. Reson., 38, 507-527.
10. Eisenstadt, M. (1985) Biochemistry, 24, 3407-3421.
11. Fetler, B.K., Simplaceanu, V., Vander Ven, N.S., Lowe, I.J. and Ho, C. (1993) J. Magn. Reson., B101, 17-27.
12. Fratini, A.V., Kopka, M.L., Drew, H.R. and Dickerson, R.E. (1982) J. Biol. Chem., 257, 14686-14707.
13. Fung, B.M. and McGaughy, T.W. (1980) J. Magn. Reson., 39, 413-420.
14. Gerothanassis, J.P. (1994) Prog. NMR Spectrosc., 26, 171-237.
15. Goldammer, E.V. and Zeidler, M.D. (1969) Ber. Buns. Phys. Chem., 73, 4-15.
16. Haber-Pohlmeier, S. and Eimer, W. (1993) J. Phys. Chem., 97, 3095-3097.
17. Hare, D.R., Wemmer, D.E., Chou, S. and Drobny, G. (1983) J. Mol. Biol., 171, 319-336.
18. Hernandez, G., Tweedle, M.F., Brittain, H. and Bryant, R.G. (1990) Inorg. Chem., 29, 985-988.
19. Herz, H.G. (1967) Prog. NMR Spectrosc., 3, 159-230.
20. Kalk, A. and Berendsen, H.J.C. (1976) J. Magn. Reson., 24, 343-346.
21. Kimmich, R. and Doster, W. (1976) J. Polym. Sci. Polym. Phys., 14, 1671-1682.
22. Kimmich, R. and Winter, F. (1985) Prog. Colloid Polym. Sci., 71, 66-70.
23. Kimmich, R., Winter, F., Nusser, W. and Spohn, K.H. (1986) J. Magn. Reson., 68, 263-282.
24. Kimmich, R. (1990) Prog. Colloid Polym., 83, 211-215.
25. Kimmich, R., Gneiting, T., Kotitschke, K. and Schnur, G. (1990) Biophys. J., 58, 1183-1197.
26. Koenig, S.H. and Schillinger, W.E. (1969) J. Biol. Chem., 12, 3283-3289.
27. Koenig, S.H. and Hallenga, K. (1976) Biochemistry, 15, 4255-4263.
28. Koenig, S.H., Bryant, R.G., Hallenga, K. and Jacobs, G.S. (1978) Biochemistry, 17, 4348-4358.
29. Kopka, M.L., Fratini, A.V., Drew, H.R. and Dickerson, R.E. (1983) J. Mol. Biol., 163, 129-146.
30. Kotitschke, K., Kimmich, R., Rommel, E. and Parak, F. (1990) Prog. Colloid Polym. Sci., 83, 211-215.
31. Krynicki, K. (1966) Physica, 32, 167-180.
32. Kubinec, M.G. and Wemmer, D. (1992) J. Am. Chem. Soc., 114, 8739-8740.
33. Liepinsh, E., Otting, G. and Wüthrich, K. (1992) Nucleic Acids Res., 20, 6549-6553.
34. Marshall, A.G. (1970) J. Chem. Phys., 52, 2527-2534.
35. Marshall, A.G., Schmidt, P.G. and Sykes, B.D. (1972) Biochemistry, 11, 3875-3879.
36. Nuutero, S., Fujimoto, B.S., Flynn, P.F., Reid, B.R., Ribeiro, N.S. and Schurr, J.M. (1994) Biopolymers, 34, 463-480.
37. Ott, J. and Eckstein, F. (1985) Biochemistry, 24, 2530-2535.
38. Otting, G. and Wüthrich, K. (1989) J. Am. Chem. Soc., 111, 1871-1875.
39. Otting, G., Liepinsh, E. and Wüthrich, K. (1991a) Science, 254, 974-980.
40. Otting, G., Liepinsh, E. and Wüthrich, K. (1991b) J. Am. Chem. Soc., 113, 4363-4369.
41. Otting, G., Liepinsh, E., Farmer II, B.T. and Wüthrich, K. (1991c) J. Biol. Nucl. Magn. Reson., 1, 209-215.
42. Pardi, A., Morden, K.M., Patel, D.J. and Tinoco Jr., I. (1982) Biochemistry, 24, 6568-6574.
43. Patel, D.J. (1982) Proc. Natl. Acad. Sci. USA, 79, 6424-6428.
44. Patel, D.J., Kozlowski, S.A., Marky, L.A., Broka, C., Rice, J.A., Itakura, K. and Breslauer, K.J. (1982) Biochemistry, 21, 428-436.
45. Patel, D.J., Kozlowski, S.A. and Bhatt, R. (1983) Proc. Natl. Acad. Sci. USA, 80, 3908-3912.
46. Polnaszek, C.F. and Bryant, R.G. (1984a) J. Am. Chem. Soc., 106, 428-429.
47. Polnaszek, C.F. and Bryant, R.G. (1984b) J. Chem. Phys., 81, 4038-4045.
48. Polnaszek, C.F., Hanggi, D., Carr, P.W. and Bryant, R.G. (1987) Anal. Chim. Acta, 194, 311-316.
49. Quintana, J.R., Lipanov, A.A. and Dickerson, R.E. (1991) Biochemistry, 30, 10394-10396.
50. Rajagopal, P., Gilbert, D.E., Van der Marel, G.A., Van Boom, K.H. and Feigon, J. (1988) J. Magn. Reson., 78, 526-537.
51. Redfield, A.G., Fite, W. and Bleich, H.E. (1968) Rev. Sci. Instrum., 39, 710-715.
52. Schauer, G., Kimmich, R. and Nusser, W. (1988) Biophys. J., 53, 397-404.
53. Shirley, W.M. and Bryant, R.G. (1982) J. Am. Chem. Soc., 104, 2910-2918.
54. Sklenář, B., Brooks, B.R., Zon, G. and Bax, A. (1987) FEBS Lett., 216, 249-252.
55. Smallcombe, S. (1993) J. Am. Chem. Soc., 115, 4776-4785.
56. Solomon, I. (1956) Phys. Rev., 99, 559-565.
57. States, D.J., Haberkorn, R.A. and Ruben, D.J. (1982) J. Magn. Reson., 48, 286-292.
58. Thomas, G.A., Kubasek, W.L. and Peticolas, W.L. (1989) Biochemistry, 28, 2001-2009.
59. Turner, D.L. (1985) Prog. NMR Spectrosc., 17, 281-358.
60. Whaley, M., Polnaszek, C.F., Cafiso, D.S. and Bryant, R.G., in preparation.
61. Wing, R., Drew, H., Takano, T., Broka, C., Tanka, S., Itakura, K. and Dickerson, R.E. (1985) Nature, 287, 755-758.
62. Zhou, D. and Bryant, R.G. (1994) Magn. Reson. Med., 32, 725-732.