Identification of an amplified gene cluster in glioma including two novel amplified genes isolated by exon trapping

Human Genetics

Volumn 101, Issue 2, 1997, Pages 190-197

  Mueller, Hans Werner ^a   Michel, Armin ^a   Heckel, Dirk ^a   Fischer, Ulrike ^a   Tönnes, Monika ^a   Tsui, Lap Chee ^b   Scherer, Steven ^b   Zang, Klaus D ^a   Meese, Eckart ^a  

^a SAARLAND UNIVERSITY   (Germany)

^b HOSPITAL FOR SICK CHILDREN   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

CONTIG; DNA; DNA MARKER; GROWTH FACTOR RECEPTOR; PROTEIN SUBUNIT; SCATTER FACTOR;

ARTICLE; CONTROLLED STUDY; EXON; GENE AMPLIFICATION; GENE CLUSTER; GENE EXPRESSION; GENE ISOLATION; GLIOMA; HUMAN; HUMAN CELL; MOLECULAR CLONING; OPEN READING FRAME; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PROTO ONCOGENE; RECEPTOR GENE; SOUTHERN BLOTTING; YEAST ARTIFICIAL CHROMOSOME;

ACTIN CAPPING PROTEINS; ACTIN DEPOLYMERIZING FACTORS; CAPZ ACTIN CAPPING PROTEIN; CHROMOSOMES, HUMAN, PAIR 7; COSMIDS; DESTRIN; EXONS; GENE AMPLIFICATION; GLIOMA; HUMANS; IN SITU HYBRIDIZATION, FLUORESCENCE; MICROFILAMENT PROTEINS; MOLECULAR SEQUENCE DATA; MULTIGENE FAMILY; PROTO-ONCOGENE PROTEINS C-MET;

EID: 0031468813     PISSN: 03406717     EISSN: None     Source Type: Journal    
DOI: 10.1007/s004390050612     Document Type: Article

References (42)

1. Alitalo K, Schwab M (1986) Oncogene amplification in tumor cells. Adv Cancer Res 47:235-281
2. Altschul SF, Gish W, Miller W, Myers E, Lippman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403-410
3. Anand R, Ogilvie DJ, Butler R, Riley JH, Finniear RS, Powell SJ, Smith JC, Markham AF (1991) A yeast artificial chromosome contig encompassing the cystic fibrosis locus. Genomics 9: 124-130
4. Antequera F, Bird A (1993) Number of CpG islands and genes in human and mouse. Proc Natl Acad Sci USA 90:11995-11999
5. Barron-Casella EA, Torres MA, Scherer SW, Heng HHQ, Tsui LC, Casella JF (1995) Sequence analysis and chromosomal localization of human Cap Z. J Biol Chem 270:21472-21479
6. Bishop JM (1991) Molecular themes in oncogenesis. Cell 64:235-248
7. Bliek AM van der, Baas F, Ten Houte de Lange T Ten, Kooiman PM, Velde Koerts T van der, Borst P(1987) The human mdr3 gene encodes a novel P-glycoprotein homologue and gives rise to alternatively spliced mRNAs in liver. EMBO J 6:3325-3331
8. Bottaro DB, Rubin JS, Faletto DL, Chan A-L, Kmiecik TE, Vande Woude GF, Aaronson SA (1991) Identification of the hepatocyte growth factor receptor as the c-met proto-oncogene product. Science 251:802-804
9. Brass N, Heckel D, Meese E (1998) Comparative PCR: a simple and rapid method to detect gene amplification. Biotechniques (in press)
10. Brooks-Wilson AR, Goodfellow PN, Povey S, Nevanlinna HA, De-Jong PJ, Goodfellow PJ (1990) Rapid cloning and characterization of new chromosome 10 DNA markers by Alu element-mediated PCR. Genomics 7:614-620
11. Casella JF, Maack DJ, Lin S (1986) Purification and initial characterization of a protein from skeletal muscle that caps the barbed ends of actin filaments. J Biol Chem 261:10915-10921
12. Fakharzadeh SS, Rosenblum-Vos L, Murphy M, Hoffman EK, George DL (1993) Structure and organization of amplified DNA on double minutes containing the mdm2 oncogene. Genomics 15:283-290
13. Fischer U, Mueller HW, Sattler HP, Feiden K, Zang KD, Meese E (1995) Amplification of the MET gene in glioma. Genes Chromosom Cancer 12:63-65
14. Foster K, Ferrell R, King-Underwood L, Povey S, Attwood J, Rennick R, Humphries SE, Henney AM (1993) Description of a dinucleotide repeat polymorphism in the human elastin gene and its use to confirm assignment of the gene to chromosome 7. Ann Hum Genet 57:87-96
15. Fukumoto M, Shevrin DH, Roninson IB (1988) Analysis of gene amplification in human tumor cell lines. Proc Natl Acad Sci USA 85:6846-6850
16. Fuller GN, Bigner SH (1992) Amplified cellular oncogenes in neoplasms of the human central nervous system. Mutat Res 276:299-306
17. Gracia E, Fischer U, ElKahloun A, Trent JM, Meese E, Meltzer P (1996) Isolation of genes amplified in human cancers by microdissection mediated cDNA capture. Hum Mol Gen 5:595-600
18. Guan XY, Meltzer PS, Dalton WS, Trent JM (1994) Identification of cryptic sites of DNA sequence amplification in breast cancer by chromosome microdissection. Nat Genet 8:155-161
19. Hamlin JL, Milbrandt JD, Heintz NH, Azizkhan JC (1984) DNA sequence amplification in mammalian cells. Int Rev Cytol 90: 31-82
20. Hatada I, Hayashizaki Y, Hirotsune S, Komatsubara H, Mukai T (1991) A genomic scanning method for higher organisms using restriction sites as landmarks. Proc Natl Acad Sci USA 88: 9523-9527
21. Kafatos F, Orr CW, Delidakis C (1985) Studies on the developmentally regulated expression and amplification of insect chorion genes. Trends Genet 1:301-306
22. Kallioniemi A, Kallioniemi OP, Sudar D, Rutovitz D, Gray JW, Waldman F, Pinkel D (1992) Comparative genomic hybridization for molecular cytogenetic analysis of solid tumors. Science 258:818-821
23. Kerem B, Rommens JM, Buchanan JA, Markiewicz D, Cox TK, Chakravati A, Buchwald M, Tsui LC (1989) Identification of the cystic fibrosis gene: genetic analysis. Science 245:1073-1080
24. Libermann TA, Nussbaum HR, Razon N, Kris R, Lax I, Soreg H, Whittle N, Waterfield MD, Ullrich A, Schlessinger R (1985) Amplification, enhanced expression and possible rearrangement of EGF receptor gene in primary human brain tumours of glial origin. Nature 313:144-147
25. Meltzer PS, Guan XY, Trent JM (1992) Rapid generation of region specific probes by chromosome microdissection and their application. Nat Genet 1:24-28
26. Muellenbach R, Lagoda PJ, Welter C (1989) An efficient saltchloroform extraction of DNA from blood and tissues. Trends Genet 5:391-394
27. Mueller HW, Meese EU (1997) Improved method for the construction of cosmid sublibraries from yeast artificial chromosomes. Biotechniques 22:264-268
28. Naldini L, Weidner KM, Vigna E, Gausino G, Bardelli A, Ponzetto C, Narsimhan RP, Hartmann G, Zarnegar R, Michalopoulos GA, Birchmeir W, Comoglio PM (1991) Scatter factor and hepatocyte growth factor are indistinguishable ligands for the MET receptor. EMBO J 10:2867-2878
29. Ried T, Petersen I, Holtgreve-Grez H, Speicher MR, Schröck E, Du Manoir S, Cremer T (1994) Mapping of multiple DNA gains and losses in primary small cell lung carcinomas by comparative genomic hybridization. Cancer Res 54:1801-1806
30. Riley J, Butler R, Ogilvie D, Finnear R, Jenner D, Powell S, Anand R, Smith JC, Markham AF (1990) A novel, rapid method for the isolation of terminal sequences from yeast artificial chromosome (YAC) clones. Nucleic Acids Res 18:2887-2890
31. Rommens JM, Jannuzzi MC, Kerem B, Drumm ML, Melmer G, Dean M, Rozmahel R, Cole JL, Kennedy D, Hidaka N, et al (1989) Identification of the cystic fibrosis gene: chromosome walking and jumping. Science 245:1059-1065
32. Scherer SW, Rommens JM, Soder S, Wong E, Plavsic N, Tompkins BJF, Beattie A, Kim J, Tsui L (1993) Refined localization and yeast artificial chromosome (YAC) contig-mapping of genes and DNA segments in the 7q21-q32 region. Hum Mol Genet 2:751-760
33. Seeger RC, Brodeur GM, Sather H, Dalton A, Siegel S, Wong K, Hammond D (1985) Association of multiple copies of the Nmyc oncogene with rapid progression of neuroblastomas. N Engl J Med 313:1111-1116
34. Slamon DJ, Clark GM, Wong SG, Levin WJ, Ullrich A, McGuire WL (1987) Human breast cancer: correlation of relapse and survival with amplification of the HER-2/neu oncogene. Science 235:177-182
35. Slamon DJ, Godolphin W, Jones LA, et al (1989) Studies of the HER-2/neu proto-oncogene in human breast and ovarian cancer. Science 244:707-712
36. Stark GR, Wahl GM (1984) Gene amplification. Annu Rev Biochem 53:447-491
37. Su YA, Trent JM, Guan XY, Meltzer PS (1994) Direct isolation of genes encoded within a homogeneously staining region by chromosome microdissection. Proc Natl Acad Sci USA 91:9121-9125
38. Tonini GP, Verdona G, De-Bernardi B, Sansone R, Massimo L, Cornaglia-Ferraris P (1987) N-myc oncogene amplification in a patient with IV-S neuroblastoma. Am J Pediatr Hematol Oncol 9:8-10
39. Wagner R, Maguire M, Stallings R (1993) Chromosomes: a synthesis. Wiley, New York
40. White R, Leppert M, O'Connell P, Nakamura Y, Woodward S, Hoff M, Herbst J, Dean M, Vande Woude G, Lathrop GM (1986) Further linkage data on cystic fibrosis: the Utah Study. Am J Hum Genet 39:694-698
41. Wullich B, Mueller HW, Fischer U, Zang KD, Meese E (1993) Amplified MET gene linked to double minutes in human glioblastoma. Eur J Cancer 29A:1991-1995
42. Zielenski J, Rozmahel R, Bozon D, Kerem B, Grzelczak Z, Riordan JR, Rommens J (1991) Genomic DNA sequence of the cystic fibrosis transmembrane conductance regulator (CFTR) gene. Genomics 10:214-228