Genotype of GB virus C/hepatitis G virus by molecular evolutionary analysis

Virus Research

Volumn 52, Issue 2, 1997, Pages 221-230

  Kondo, Yutaka ^a   Mizokami, Masashi ^a   Nakano, Tatsunori ^a   Kato, Takanobu ^a   Ohba, Ken Ichi ^a   Orito, Etsuro ^a   Ueda, Ryuzo ^a   Mukaide, Motokazu ^b   Hikiji, Kazumasa ^b   Oyunsuren, Tsendsuren ^c   Cooksley, W Graham ^d  

^a NAGOYA CITY UNIV MEDICAL SCHOOL   (Japan)

^b SRL INC   (Japan)

^c Academy of Science   (Mongolia)

^d Royal Brisbane and Womens Hospital Research Foundation   (Australia)

Author keywords

5' UTR; GBV C; Genotype; HGV

Indexed keywords

ARTICLE; AUSTRALIA; BANGLADESH; CAMEROON; CHRONIC HEPATITIS; CONGO; GENOTYPE; HEPATITIS G VIRUS; HUMAN; JAPAN; MONGOLIA; NUCLEOTIDE SEQUENCE; PHYLOGENY; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RNA ANALYSIS; SERUM; VIRUS CLASSIFICATION; VIRUS ISOLATION;

BASE SEQUENCE; DNA, VIRAL; EVOLUTION, MOLECULAR; FLAVIVIRIDAE; GENOTYPE; HUMANS; MOLECULAR SEQUENCE DATA; SEQUENCE HOMOLOGY, NUCLEIC ACID;

GB VIRUS C/HEPATITIS G VIRUS; RNA VIRUSES;

EID: 0031453921     PISSN: 01681702     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0168-1702(97)00123-8     Document Type: Article

References (20)

1. Brown, J.K.M., 1994. Bootstrap hypothesis tests for evolutionary trees and other dendrograms. Proc. Natl. Acad. Sci. USA 91, 12293-12297.
2. Ercker, J.C., Simons, J.N., Muerhoff, A.S., Leary, T.P., Chalmers, M.L., Desai, S.M., Mushahwar, I.K., 1996. Molecular cloning and characterization of a GB virus C isolate from a patient with non-A-E hepatitis. J. Gen. Virol. 77, 2713-2720.
3. Felsenstein, J., 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
4. Gojobori, T., Ishii, K., Nei, M., 1982. Estimation of average number of nucleotide substitutions when the rate of substitution varies. J. Mol. Evol. 28, 414-423.
5. Ina, Y., 1994. ODEN: a program package for molecular evolutionary analysis and database search of DNA and amino acid sequences. CABIOS 10, 11-12.
6. Khudyakov, Y.E., Cong, M.E., Bonafonte, M.T., Abdulmalek, S., Nichols, B.L., Lambert, S., Alter, M.J., Fields, H.A., 1997. Sequence variation within a nonstructural region of the hepatitis G virus genome. J. Virol. 71, 6875-6880.
7. Kimura, M., 1983. The Neutral Theory of Molecular Evolution, University Press, Cambridge.
8. Leary, T.P., Muerhoff, A.S., Simons, J.N., Pilot-Matias, TJ., Erker, J.C., Chalmers, M.L., Schlauder, G.G., Dawson, G.J., Desai, S.M., Mushahwar, I.K., 1996. Sequence and genomic organization of GBV-C: A novel member of the Flaviviridae associated with human non-A-E hepatitis. J. Med. Virol. 48, 60-67.
9. Linnen, J., Wages, J., Zhang-Keck, Z.Y., Fry, K.E., Krawczynski, K.Z., Alter, H., et al., 1996. Molecular cloning and disease association of hepatitis G virus: A transfusion-transmissible agent. Science 271, 505-508.
10. Muerhoff, A.S., Simons, J.N., Leary, T.P., Ercker, J.C., Chalmers, M.L., Pilot-Matias, T.J., Dawson, G.J., Suresh, M., Mushahwar, I.K., 1996. Sequence heterogeneity within the 5′-terminal region of the hepatitis GB virus C genome and evidence for genotypes. J. Hepatol. 25, 379-384.
11. Muerhoff, A.S., Smith, D.B., Leary, T.P., Ercker, J.C., Desai, S.M., Mushaahwas, I.K., 1997. Identification of GB Virus C variants by phylogenetic analysis of 5′-untranslated and coding region sequences. J. Virol. 71, 6501-6508.
12. Mukaide, M., Mizokami, M., Orito, E., Ohba, K., Nakano, T., Ueda, R., et al., 1997. Three different GB virus C/hepatitis G virus genotypes: Phylogenetic analysis and a genotyping assay based on restriction fragment length polymorphism. FEBS 407, 51-58.
13. Okamoto, H., Nakao, H., Inoue, T., Fukuda, M., Kishimoto, J., Iizuka, H., Tsuda, F., Miyakawa, Y., Mayumi, M., 1997. The entire nucleotide sequences of two GB virus C/hepatitis G virus isolates of distinct genotypes from Japan. J. Gen. Virol. 78, 737-745.
14. Pickering, J.M., Thomas, H.C., Karayiannis, P., 1997. Genetic diversity between hepatitis G virus isolates: analysis of nucleotide variation in the NS-3 and putative "core" peptide genes. J. Gen. Virol. 78, 53-60.
15. Saito, N., Nei, M., 1987. The neighbor joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4, 406-425.
16. Shao, L., Shinzawa, H., Ishikawa, K., Zhang, X., Ishibashi, M., Misawa, H., Yamada, N., Togashi, H., Takahashi, T., 1996. Sequence of hepatitis G virus genome isolate from a Japanese patient with non-A-E-hepatitis: amplification and cloning by long reverse transcription-PCR. Biochem. Biophys. Res. Commun. 228, 785-791.
17. Simmonds, P., Mellor, J., Sakuldamrongpanich, T., Nuchaprayoon, C., Tanprasert, S., Holmes, E.C., Smith, D.B., 1996. Evolutionary analysis of variants of hepatitis C virus found in South-East Asia: comparison with classifications based upon sequence similarity. J. Gen. Virol. 77, 3013-3024.
18. Simons, J.N., Leary, T.P., Dawson, G.J., Pilot-Matias, T.J., Muerhoff, A.S., Schlauder, G.G., Desai, S.M., Mushahwar, I.K., 1995. Isolation of novel virus-like sequences associated with human hepatitis. Nature Med. 1, 564-569.
19. Zhou, Y.S., Wang, H.T., He, Y.X., Zhao, H.L., Wang, H.C., Chen, W., Xu, J.J., 1996. cDNA cloning and sequencing of HGV genome from Chinese. Bull. Acad. Mil. Med. Sci. 20, 249.
20. Zuckerman, A.J., 1996. Alphabet of hepatitis viruses. Lancet 347, 558-559.