Holliday junctions accumulate in replication mutants via a RecA homolog- independent mechanism

Cell

Volumn 90, Issue 1, 1997, Pages 87-96

  Zou, Hui ^a   Rothstein, Rodney ^a  

^a Columbia University ^*  (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA FRAGMENT; DNA POLYMERASE;

ANIMAL CELL; ARTICLE; DNA DETERMINATION; DNA REPAIR; GENE EXPRESSION; GENE MUTATION; GENE REPLICATION; GENE SEGREGATION; MAMMAL; MITOSIS; NONHUMAN; PRIORITY JOURNAL; YEAST;

ANIMALIA; MAMMALIA;

EID: 0031444239     PISSN: 00928674     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0092-8674(00)80316-5     Document Type: Article

References (68)

1. Araki, H., Hamatake, R.K., Johnston, L.H., and Sugino, A. (1991). DPB2, the gene encoding DNA polymerase II subunit B, is required for chromosome replication in Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 88, 4601-4605.
2. Araki, H., Ropp, P.A., Johnson, A.L., Johnston, L.H., Morrison, A., and Sugino, A. (1992). DNA polymerase II, the probable homolog of mammalian DNA polymerase epsilon, replicates chromosomal DNA in the yeast Saccharomyces cerevisiae. EMBO J. 11, 733-740.
3. Asai, T., Bates, D.B., and Kogoma, T. (1994). DNA replication triggered by double-stranded breaks in E. coli: dependence on homologous recombination functions. Cell 78, 1051-1061.
4. Bai, Y., and Symington, L.S. (1996). A Rad52 homolog is required for RAD51-independent mitotic recombination in Saccharomyces cerevisiae. Genes Dev. 10, 2025-2037.
5. Bell, S.P., and Stillman, B. (1992). ATP-dependent recognition of eukaryotic origins of DNA replication by a multiprotein complex. Nature 357, 128-134.
6. Bishop, D.K., Park, D., Xu, L., and Kleckner, N. (1992). DMC1: a meiosis-specific yeast homolog of E. coli recA required for recombination, synaptonemal complex formation, and cell cycle progression. Cell 69, 439-456.
7. Borts, R.H., Leung, W.Y., Kramer, W., Kramer, B., Williamson, M., Fogel, S., and Haber, J.E. (1990). Mismatch repair-induced meiotic recombination requires the pms1 gene product. Genetics 124, 573-584.
8. Brewer, B.J., and Fangman, W.L. (1987). The localization of replication origins on ARS plasmids in S. cerevisiae. Cell 51, 463-471.
9. Brewer, B.J., and Fangman, W.L. (1988). A replication fork barrier at the 3′ end of yeast ribosomal RNA genes. Cell 55, 637-643.
10. Budd, M.E., and Campbell, J.L. (1993). DNA polymerases δ and ∈ are required for chromosomal replication in Saccharomyces cerevisiae. Mol. Cell. Biol. 13, 496-505.
11. Campbell, J.L. (1993). Yeast DNA replication. J. Biol. Chem. 268, 25261-25264.
12. Cao, Y., and Kogoma, T. (1995). The mechanism of recA polA lethality: suppression by RecA-independent recombination repair activated by the lexA(Def) mutation in Escherichia coli. Genetics 139, 1483-1494.
13. Dunderdale, H.J., Sharpies, G.J., Lloyd, R.G., and West, S.C. (1994). Cloning, overexpression, purification, and characterization of the Escherichia coli RuvC Holliday junction resolvase. J. Biol. Chem. 269, 5187-5194.
14. Fasullo, M.T., and Davis, R.W. (1987). Recombinational substrates designed to study recombination between unique and repetitive sequences in vivo. Proc. Natl. Acad. Sci. USA 84, 6215-6219.
15. Foiani, M., Marini, F.,Gamba, D., Lucchini,G.,and Plevani, P. (1994). The B subunit of the DNA polymerase α-primase complex in Saccharomyces cerevisiae executes an essential function at the initial stage of DNA replication. Mol. Cell. Biol. 14, 923-933.
16. Friedberg, E.G., Walker, G.C., and Siede, W. (1995). DNA Repair and Mutagenesis (Washington, D.C.: American Society for Microbiology).
17. Gangloff, S., Zou, H., and Rothstein, R. (1996). Gene conversion plays the major role in controlling the stability of large tandem repeats in yeast. EMBO J. 15, 1715-1725.
18. Garvik, B., Carson, M., and Hartwell, L. (1995). Single-stranded DNA arising at telomeres in cdc13 mutants may constitute a specific signal for the RAD9 checkpoint. Mol. Cell. Biol. 15, 6128-6138.
19. Gerring, S.L., Connelly, C., and Hieter, P. (1991). Positional mapping of genes by chromosome blotting and chromosome fragmentation. In Guide to Yeast Genetics and Molecular Biology, C. Guthrie and G.R. Fink, eds. (San Diego, CA: Academic Press Inc.), pp. 57-77.
20. Gordenin, D.A., Malkova, A.L., Peterzen, A., Kulikov, V.N., Pavlov, Y.I., Perkins, E., and Resnick, M.A. (1992).Transposon Tn5 excision in yeast: influence of DNA polymerases α, δ, and ∈ and repair genes. Proc. Natl. Acad. Sci. USA 89, 3785-3789.
21. Hall, S.D., and Kolodner, R.D. (1994). Homologous pairing and strand exchange promoted by the Escherichia coli Rec T protein. Proc.Natl. Acad. Sci. USA 91, 3205-3209.
22. Hartwell, L.H. (1967). Macromolecule synthesis in temperature-sensitive mutants of yeast. J. Bacteriol. 93, 1662-1670.
23. Higgins, N.P., Kato, K., and Strauss, B. (1976). A model for replication repair in mammalian cells. J. Mol. Biol. 101, 417-425.
24. Holliday, R. (1964). A mechanism for gene conversion in fungi. Genet. Res. 5, 282-304.
25. Jessberger, R., Podust, V., Hubscher, U., and Berg, P. (1993). A mammalian protein complex that repairs double-strand breaks and deletions by recombination. J. Biol. Chem. 268, 15070-15079.
26. Kadyk, L.C., and Hartwell, L.H. (1992). Sister chromatids are preferred over homologs as substrates for recombinational repair in Saccharomyces cerevisiae. Genetics 132, 387-402.
27. Kans, J.A., and Mortimer, R.K. (1991). Nucleotide sequence of the RAD57 gene of Saccharomyces cerevisiae. Gene 705, 139-140.
28. Kawasaki, I., Bae, Y.S., Eki, T., Kim, Y., and Ikeda, H. (1994). Homologous recombination of monkey alpha-satellite repeats in an in vitro simian virus 40 replication system: possible association of recombination with DNA replication. Mol. Cell. Biol. 74, 4173-4182.
29. Klein, H.L. (1995). Genetic control of intrachromosomal recombination. Bioessays 77, 147-159.
30. Kogoma, T. (1997). Is RecF a DNA replication protein? Proc. Natl. Acad. Sci. USA 94, 3483-3484.
31. Kowalczykowski, S.C., Dixon, D.A., Eggleston, A.K., Lauder, S.D., and Rehrauer, W.M. (1994). Biochemistry of homologous recombination in Escherichia coli. Microbiol. Rev. 58, 401-465.
32. Kreuzer, K.N., and Morrical, S.W. (1994). Initiation of DNA replication. In Molecular Biology of Bacteriophage T4, J.D. Karam, ed. (Washington, DC: ASM Press), pp. 28-42.
33. Kunz, B.A., Peters, M.G., Kohalmi, S.E., Armstrong, D., Glattke, M., and Badiani, K. (1989). Disruption of the RAD52 gene alters the spectrum of spontaneous SUP4-O mutations in Saccharomyces cerevisiae. Genetics 122, 535-542.
34. Kuzminov, A. (1995). Collapse and repair of replication forks in Escherichia coli. Mol. Microbiol. 16, 373-384.
35. Liang, C., and Gerbi, S.A. (1994). Analysis of an origin of DNA amplification in Sciara coprophila by a novel three-dimensional gel method. Mol. Cell. Biol. 14, 1520-1529.
36. Lovett, S.T. (1994). Sequence of the RAD55 gene of Saccharomyces cerevisiae: similarity of RAD55 to prokaryotic RecA and other RecA-like proteins. Gene 142, 103-106.
37. McDonald, J.P., and Rothstein, R. (1994). Unrepaired heteroduplex DNA in Saccharomyces cerevisiae is decreased in RAD1 RAD52-independent recombination. Genetics 137, 393-405.
38. Montelone, B.A., Prakash, S., and Prakash, L. (1981). Spontaneous mitotic recombination in mms8-1, an allele of the CDC9 gene of Saccharomyces cerevisiae. J. Bacteriol. 147, 517-525.
39. Morrison, A., Araki, H., Clark, A.B., Hamatake, R.K., and Sugino, A. (1990). A third essential DNA polymerase in S. cerevisiae. Cell 62, 1143-1151.
40. Mortensen, U.H., Bendixen, C., Sunjevaric, I., and Rothstein, R. (1996). DNA strand annealing is promoted by the yeast Rad52 protein. Proc. Natl. Acad. Sci. USA 93, 10729-10734.
41. Mortimer, R.K., Contopoulou, R., and Schild, D. (1981). Mitotic chromosome loss in a radiation-sensitive strain of the yeast Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 78, 5778-5782.
42. Navas, T.A., Zhou, Z., and Elledge, S.J. (1995). DNA polymerase epsilon links the DNA replication machinery to the S phase checkpoint. Cell 80, 29-39.
43. Panyutin, I.G., and Hsieh, P. (1994). The kinetics of spontaneous DNA branch migration. Proc. Natl. Acad. Sci. USA 91, 2021-2025.
44. Petes, T.D., Malone, R.E., and Symington, L.S. (1991). Recombination in yeast. In The Molecular and Cellular Biology of the Yeast Saccharomyces: Genome Dynamics, Protein Synthesis and Energetics, J.R. Broach, J.R. Pringle, and E.W. Jones, eds. (Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press), pp. 407-521.
45. Plevani, P., Badaracco, G., Augl, C., and Chang, L.M. (1984). DNA polymerase I and DNA primase complex in yeast. J. Biol. Chem. 259, 7532-7539.
46. Rattray, A.J., and Symington, L.S. (1995). Multiple pathways for homologous recombination in Saccharomyces cerevisiae. Genetics 139, 45-56.
47. Reagan, M.S., Pittenger, C., Siede, W., and Friedberg, E.G. (1995). Characterization of a mutant strain of Saccharomyces cerevisiae with a deletion of the RAD27 gene, a structural homolog of the RAD2 nucleotide excision repair gene. J. Bacteriol. 177, 364-371.
48. Rothstein, R., and Gangloff, S. (1995). Hyper-recombination and Bloom's syndrome: microbes again provide clues about cancer. Genome Res. 5, 421-426.
49. Rupp, W.D., Wilde, C.E., III, Reno, D.L., and Howard-Flanders, P. (1971). Exchanges between DNA strands in ultraviolet-irradiated Escherichia coli. J. Mol. Biol. 61, 25-44.
50. Saffer, L.D., and Miller, O.L., Jr. (1986). Electron microscopic study of Saccharomyces cerevisiae rDNA chromatin replication. Mol. Cell. Biol. 6, 1148-1157.
51. Sambrook, J., Fritsch, E.F., and Maniatis, T. (1989). Molecular Cloning: A Laboratory Manual, 2nd Ed. (Cold Spring Harbor, NY: Cold Spring Harbor Laboratory).
52. Schwacha, A., and Kleckner, N. (1995). Identification of double Holliday junctions as intermediates in meiotic recombination. Cell 83, 783-791.
53. Sethi, N., Monteagudo, M.C., Koshland, D., Hogan, E., and Burke, D.J. (1991). The CDC20 gene product of Saccharomyces cerevisiae, a β-transducin homolog, is required for a subset of microtubule-dependent cellular processes. Mol. Cell. Biol. 11, 5592-5602.
54. Sherman, F., Fink, G.R., and Hicks, J.B. (1986). Methods in Yeast Genetics (Cold Spring Harbor, NY: Cold Spring Harbor Laboratory).
55. Shinohara, A., Ogawa, H., and Ogawa, T. (1992). Rad51 protein involved in repair and recombination in S. cerevisiae is a RecA-like protein. Cell 69, 457-470.
56. Skalka, A. (1974). A replicator's view of recombination (and repair). In Mechanisms in Recombination, R.F. Grell, ed. (New York: Plenum Press), pp. 421-432.
57. Strand, M., Prolla,T.A., Liskay, R.M., and Petes, T.D. (1993). Destabilization of tracts of simple repetitive DNA in yeast by mutations affecting DNA mismatch repair. Nature 365, 274-276.
58. Sugawara, N., Ivanov, E.L., Fishman-Lobell, J., Ray, B.L., Wu, X., and Haber, J.E. (1995). DNA structure-dependent requirements for yeast RAD genes in gene conversion. Nature 373, 84-86.
59. Sugino, A. (1995). Yeast DNA polymerases and their role at the replication fork. Trends Biochem. Sci. 20, 319-323.
60. Sung, P. (1997). Yeast Rad55 and Rad57 proteins form a heterodimer that functions with replication protein A to promote DNA strand exchange by Rad51 recombinase. Genes Dev. 11, 1111-1121.
61. Sung, P., and Robberson, D.L. (1995). DNA strand exchange mediated by a RAD51 -ssDNA nucleoprotein filament with polarity opposite to that of RecA. Cell 82, 453-461.
62. Szostak, J.W., and Wu, R. (1980). Unequal crossing over in the ribosomal DNA of Saccharomyces cerevisiae. Nature 284, 426-430.
63. Szostak, J.W., Orr-Weaver, T.L., Rothstein, R.J., and Stahl, F.W. (1983). The double-strand-break repair model for recombination. Cell 33, 25-35.
64. Thomas, B.J., and Rothstein, R. (1989). Elevated recombination rates in transcriptionally active DNA. Cell 56, 619-630.
65. Walmsley, R.M., Johnston, L.H., Williamson, D.H., and Oliver, S.G. (1984). Replicon size of yeast ribosomal DNA. Mol. Gen. Genet. 195, 260-266.
66. White, C.I., and Haber, J.E. (1990). Intermediates of recombination during mating type switching in Saccharomyces cerevisiae. EMBO J. 9, 663-673.
67. Young, C.S., Cachianes, G., Munz, P., and Silverstein, S. (1984). Replication and recombination in adenovirus-infected cells are temporally and functionally related. J. Virol. 51, 571-577.
68. Zgaga, Z., Chanet, R., Radman, M., and Fabre, F. (1991). Mismatch-stimulated plasmid integration in yeast. Curr. Genet. 19, 329-332.