-
1
-
-
0030824122
-
Sisyphus and prediction of protein structure
-
Rost, B., O'Donoghue, S.I. Sisyphus and prediction of protein structure. CABIOS 13:345-356, 1997.
-
(1997)
CABIOS
, vol.13
, pp. 345-356
-
-
Rost, B.1
O'Donoghue, S.I.2
-
2
-
-
0029902780
-
Bridging the protein sequence-structure gap by structure predictions
-
Rost, B., Sander, C. Bridging the protein sequence-structure gap by structure predictions. Annu. Rev. Biophys. Biomol. Struct. 25:113-136, 1996.
-
(1996)
Annu. Rev. Biophys. Biomol. Struct.
, vol.25
, pp. 113-136
-
-
Rost, B.1
Sander, C.2
-
3
-
-
0021097529
-
How good are predictions of protein secondary structure?
-
Kabsch, W., Sander, C. How good are predictions of protein secondary structure? FEBS Lett. 155:179-182, 1983.
-
(1983)
FEBS Lett.
, vol.155
, pp. 179-182
-
-
Kabsch, W.1
Sander, C.2
-
5
-
-
0018796254
-
Improvements in the prediction of protein topography by reduction of statistical errors
-
Maxfield, F.R., Scheraga, H.A. Improvements in the prediction of protein topography by reduction of statistical errors. Biochemistry 18:697-704, 1979.
-
(1979)
Biochemistry
, vol.18
, pp. 697-704
-
-
Maxfield, F.R.1
Scheraga, H.A.2
-
6
-
-
0023660653
-
Prediction of protein secondary structure and active sites using alignment of homologous sequences
-
Zvelebil, M.J., Barton, G.J., Taylor, W.R., Sternberg, M.J.E. Prediction of protein secondary structure and active sites using alignment of homologous sequences. J. Mol. Biol. 195:957-961, 1987.
-
(1987)
J. Mol. Biol.
, vol.195
, pp. 957-961
-
-
Zvelebil, M.J.1
Barton, G.J.2
Taylor, W.R.3
Sternberg, M.J.E.4
-
7
-
-
0024059423
-
A simple method for predicting the secondary structure of globular proteins: Implications and accuracy
-
Gascuel, O., Golmard, J.L. A simple method for predicting the secondary structure of globular proteins: Implications and accuracy. CABIOS 4:357-365, 1988.
-
(1988)
CABIOS
, vol.4
, pp. 357-365
-
-
Gascuel, O.1
Golmard, J.L.2
-
9
-
-
0027402899
-
The nitrogenase MoFe protein
-
Gerloff, D.L., Jenny, T.F., Knecht, L.J., Gonnet, G.H., Benner, S.A. The nitrogenase MoFe protein. FEBS Lett. 318:118-124, 1993.
-
(1993)
FEBS Lett.
, vol.318
, pp. 118-124
-
-
Gerloff, D.L.1
Jenny, T.F.2
Knecht, L.J.3
Gonnet, G.H.4
Benner, S.A.5
-
10
-
-
0027291015
-
Prediction of protein secondary structure at better than 70% accuracy
-
Rost, B., Sander, C. Prediction of protein secondary structure at better than 70% accuracy. J. Mol. Biol. 232:584-599, 1993.
-
(1993)
J. Mol. Biol.
, vol.232
, pp. 584-599
-
-
Rost, B.1
Sander, C.2
-
11
-
-
0028180367
-
Bona fide prediction of aspects of protein conformation
-
Benner, S.A., Badcoe, I., Cohen, M.A., Gerloff, D.L. Bona fide prediction of aspects of protein conformation. J. Mol. Biol. 235:926-958, 1994.
-
(1994)
J. Mol. Biol.
, vol.235
, pp. 926-958
-
-
Benner, S.A.1
Badcoe, I.2
Cohen, M.A.3
Gerloff, D.L.4
-
12
-
-
0028300741
-
Combining evolutionary information and neural networks to predict protein secondary structure
-
Rost, B., Sander, C. Combining evolutionary information and neural networks to predict protein secondary structure. Proteins 19:55-72, 1994.
-
(1994)
Proteins
, vol.19
, pp. 55-72
-
-
Rost, B.1
Sander, C.2
-
13
-
-
0028109886
-
Conservation and prediction of solvent accessibility in protein families
-
Rost, B., Sander, C. Conservation and prediction of solvent accessibility in protein families. Proteins 20:216-226, 1994.
-
(1994)
Proteins
, vol.20
, pp. 216-226
-
-
Rost, B.1
Sander, C.2
-
14
-
-
0028239337
-
Use of amino acid environment-dependent substitution tables and conformational propensities in structure prediction from aligned sequences of homologous proteins. I. Solvent accessibility classes
-
Wako, H., Blundell, T.L. Use of amino acid environment-dependent substitution tables and conformational propensities in structure prediction from aligned sequences of homologous proteins. I. Solvent accessibility classes. J. Mol. Biol. 238:682-692, 1994.
-
(1994)
J. Mol. Biol.
, vol.238
, pp. 682-692
-
-
Wako, H.1
Blundell, T.L.2
-
15
-
-
0028304961
-
Use of amino acid environment-dependent substitution tables and conformational propensities in structure prediction from aligned sequences of homologous proteins. II. Secondary structures
-
Wako, H., Blundell, T.L. Use of amino acid environment-dependent substitution tables and conformational propensities in structure prediction from aligned sequences of homologous proteins. II. Secondary structures. J. Mol. Biol. 238:693-708, 1994.
-
(1994)
J. Mol. Biol.
, vol.238
, pp. 693-708
-
-
Wako, H.1
Blundell, T.L.2
-
16
-
-
0029149907
-
Protein secondary structure prediction
-
Barton, G.J. Protein secondary structure prediction. Curr. Opin. Struct. Biol. 5:372-376, 1995.
-
(1995)
Curr. Opin. Struct. Biol.
, vol.5
, pp. 372-376
-
-
Barton, G.J.1
-
17
-
-
0029161593
-
A predicted consensus structure for the protein-kinase c2 homology (c2h) domain, the repeating unit of synaptotagmin
-
Gerloff, D.L., Chelvanayagam, G., Benner, S.A. A predicted consensus structure for the protein-kinase c2 homology (c2h) domain, the repeating unit of synaptotagmin. Proteins 22:299-310, 1995.
-
(1995)
Proteins
, vol.22
, pp. 299-310
-
-
Gerloff, D.L.1
Chelvanayagam, G.2
Benner, S.A.3
-
18
-
-
0028965118
-
Prediction of protein secondary structure by combining nearest-neighbor algorithms and multiple sequence alignment
-
Salamov, A.A., Solovyev, V.V. Prediction of protein secondary structure by combining nearest-neighbor algorithms and multiple sequence alignment. J. Mol. Biol. 247:11-15, 1995.
-
(1995)
J. Mol. Biol.
, vol.247
, pp. 11-15
-
-
Salamov, A.A.1
Solovyev, V.V.2
-
19
-
-
0030054216
-
Improving protein secondary structure prediction with aligned homologous sequences
-
Di Francesco, V., Garnier, J., Munson, P.J. Improving protein secondary structure prediction with aligned homologous sequences. Protein Sci. 5:106-113, 1996.
-
(1996)
Protein Sci.
, vol.5
, pp. 106-113
-
-
Di Francesco, V.1
Garnier, J.2
Munson, P.J.3
-
20
-
-
0029889988
-
PHD: Predicting one-dimensional protein structure by profile based neural networks
-
Rost, B. PHD: Predicting one-dimensional protein structure by profile based neural networks. Methods Enzymol. 266:525-539, 1996.
-
(1996)
Methods Enzymol.
, vol.266
, pp. 525-539
-
-
Rost, B.1
-
21
-
-
0029885547
-
Predicting solvent accessibility: Higher accuracy using Bayesian statistics and optimized residue substitution classes
-
Thompson, M.J., Goldstein, R.A. Predicting solvent accessibility: Higher accuracy using Bayesian statistics and optimized residue substitution classes. Proteins 25:38-47, 1996.
-
(1996)
Proteins
, vol.25
, pp. 38-47
-
-
Thompson, M.J.1
Goldstein, R.A.2
-
22
-
-
0021760092
-
GCG package
-
Devereux, J., Haeberli, P., Smithies, O. GCG package. Nucleic Acids Res. 12:387-395, 1984.
-
(1984)
Nucleic Acids Res.
, vol.12
, pp. 387-395
-
-
Devereux, J.1
Haeberli, P.2
Smithies, O.3
-
23
-
-
0029889221
-
Local alignment statistics
-
Altschul, S.F., Gish, W. Local alignment statistics. Methods Enzymol. 266:460-480, 1996.
-
(1996)
Methods Enzymol.
, vol.266
, pp. 460-480
-
-
Altschul, S.F.1
Gish, W.2
-
25
-
-
0022706389
-
The relation between the divergence of sequence and structure in proteins
-
Chothia, C., Lesk, A.M. The relation between the divergence of sequence and structure in proteins. EMBO J. 5:823-826, 1986.
-
(1986)
EMBO J.
, vol.5
, pp. 823-826
-
-
Chothia, C.1
Lesk, A.M.2
-
26
-
-
0026030641
-
Database of homology-derived structures and the structural meaning of sequence alignment
-
Sander, C., Schneider, R. Database of homology-derived structures and the structural meaning of sequence alignment. Proteins 9:56-68, 1991.
-
(1991)
Proteins
, vol.9
, pp. 56-68
-
-
Sander, C.1
Schneider, R.2
-
28
-
-
0017411710
-
The Protein Data Bank: A computer-based archival file for macromolecular structures
-
Bernstein, F.C., Koetzle, T.F., Williams, G.J.B., et al. The Protein Data Bank: A computer-based archival file for macromolecular structures. J. Mol. Biol. 112:535-542, 1977.
-
(1977)
J. Mol. Biol.
, vol.112
, pp. 535-542
-
-
Bernstein, F.C.1
Koetzle, T.F.2
Williams, G.J.B.3
-
29
-
-
0017309766
-
Structural patterns in globular proteins
-
Levitt, M., Chothia, C. Structural patterns in globular proteins. Nature 261:552-558, 1976.
-
(1976)
Nature
, vol.261
, pp. 552-558
-
-
Levitt, M.1
Chothia, C.2
-
32
-
-
0030342768
-
Update on protein structure prediction: Results of the 1995 IRBM workshop
-
Hubbard, T., Tramontano, A., Barton, G., et al. Update on protein structure prediction: Results of the 1995 IRBM workshop. Folding Design 1:R55-R63, 1996.
-
(1996)
Folding Design
, vol.1
-
-
Hubbard, T.1
Tramontano, A.2
Barton, G.3
-
33
-
-
2642588937
-
-
WWW document EMBL Heidelberg, Germany
-
Rost, B. Expected prediction accuracy of PHD. WWW document (http://www.embl-heidelberg.de/∼rost/Res/96D-ExpAccuracyPHD.html): EMBL Heidelberg, Germany, 1996.
-
(1996)
Expected Prediction Accuracy of PHD
-
-
Rost, B.1
-
34
-
-
2642662418
-
-
The Scripps Research Institute, 10666 N. Torrey Pines Road, La Jolla, CA 92037, USA
-
Rychlewski, L., Godzik, A. Secondary structure predictions: In quest of forces that shape the local protein structure. The Scripps Research Institute, 10666 N. Torrey Pines Road, La Jolla, CA 92037, USA, 1996.
-
(1996)
Secondary Structure Predictions: In Quest of Forces That Shape the Local Protein Structure
-
-
Rychlewski, L.1
Godzik, A.2
-
35
-
-
0029186289
-
TOPITS: Threading one-dimensional predictions into three-dimensional structures
-
Rawlings, C., Clark, D., Altman, R., Hunter, L., Lengauer, T. and Wodak, S. (eds.). Cambridge, England. Menlo Park, CA: AAAI Press
-
Rost, B. TOPITS: Threading one-dimensional predictions into three-dimensional structures. In: Rawlings, C., Clark, D., Altman, R., Hunter, L., Lengauer, T. and Wodak, S. (eds.). Third International Conference on Intelligent Systems for Molecular Biology, Cambridge, England. Menlo Park, CA: AAAI Press, 1995:314-321.
-
(1995)
Third International Conference on Intelligent Systems for Molecular Biology
, pp. 314-321
-
-
Rost, B.1
-
36
-
-
0031577260
-
Protein fold recognition by prediction-based threading
-
Rost, B., Schneider, R., Sander, C. Protein fold recognition by prediction-based threading. J. Mol. Biol. 270:471-480, 1997.
-
(1997)
J. Mol. Biol.
, vol.270
, pp. 471-480
-
-
Rost, B.1
Schneider, R.2
Sander, C.3
-
37
-
-
0028064006
-
Redefining the goals of protein secondary structure prediction
-
Rost, B., Sander, C., Schneider, R. Redefining the goals of protein secondary structure prediction. J. Mol. Biol. 235:13-26, 1994.
-
(1994)
J. Mol. Biol.
, vol.235
, pp. 13-26
-
-
Rost, B.1
Sander, C.2
Schneider, R.3
-
38
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
-
Kabsch, W., Sander, C. Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features. Biopolymers 22:2577-2637, 1983.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
|