A Strategy for Rapid, High-Confidence Protein Identification

Analytical Chemistry

Volumn 69, Issue 19, 1997, Pages 3995-4001

  Qin, Jun ^a   Fenyö, David ^a   Zhao, Yingming ^a   Hall, William W ^d   Chao, David M ^b,c   Wilson, Christopher J ^b,c   Young, Richard A ^b,c   Chait, Brian T ^a  

^a ROCKEFELLER UNIVERSITY   (United States)

^b WHITEHEAD INSTITUTE FOR BIOMEDICAL RESEARCH   (United States)

^c MASSACHUSETTS INSTITUTE OF TECHNOLOGY   (United States)

^d UNIVERSITY COLLEGE DUBLIN   (Ireland)

Author keywords

[No Author keywords available]

Indexed keywords

HUMAN T CELL LEUKEMIA VIRUS ANTIGEN; PROTEIN; VIRUS PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; FACTUAL DATABASE; HUMAN; MASS SPECTROMETRY; METHODOLOGY; MOLECULAR GENETICS;

AMINO ACID SEQUENCE; DATABASES, FACTUAL; HTLV-I ANTIGENS; HUMANS; MOLECULAR SEQUENCE DATA; PROTEINS; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; VIRAL PROTEINS;

EID: 0031242798     PISSN: 00032700     EISSN: None     Source Type: Journal    
DOI: 10.1021/ac970488v     Document Type: Article

References (46)

1. Henzel, W. J.; Billeci, T. M.; Stultz, J. T.; Wong, S. C.; Grimley, C.; Watanbe, C. Proc. Natl. Acad. Sci. U.S.A. 1993, 90, 5011-5015.
2. Pappin, D. D. J.; Hijrup, P.; Bleasby, A. J. Curr. Biol. 1993, 3, 327-332.
3. Mann, M.; Hojrup, P.; Roepstorff, P. Biol. Mass Spectrom. 1993, 22, 338-345.
4. James, P.; Quadroni, M.; Carafoli, E.; Gonnet, G. Biochem. Biophys. Res. Commun. 1993, 195, 58-64; Protein Sci. 1994, 3, 1347-1350.
5. James, P.; Quadroni, M.; Carafoli, E.; Gonnet, G. Biochem. Biophys. Res. Commun. 1993, 195, 58-64; Protein Sci. 1994, 3, 1347-1350.
6. Yates, J. R., III; Speichner, S.; Griffin, P. R.; Hunkapiller, T. Anal. Biochem. 1993, 214, 397-408.
7. Eng, J.; McCormack, A. L.; Yates, J. R., III J. Am. Soc. Mass Spectrom. 1994, 5, 976-989.
8. Mann, M.; Wilm, M. Anal. Chem. 1994, 66, 4390-4399.
9. Yates, J. R., III; Eng, J. K.; McCormack, A. L.; Schieltz, D. Anal. Chem. 1995, 67, 1426-1436.
10. Griffin, P. R.; MacCoss, M. J.; Eng, J. K.; Blevins, R. A.; Aaronson, J. S.; Yates, J. R., III Rapid Commun. Mass Spectrom. 1995, 9, 1546-1551.
11. Shevchenko, A.; Wilm, M.; Vorm, O.; Mann, M. Anal. Chem. 1996, 68, 850-858.
12. Wilm, M.; Shevchenko, A.; Houthaeve, T.; Breit, S.; Schweigerer, L.; Fotsis, T.; Mann, M. Nature 1996, 379, 466-460.
13. Patterson, S. D.; Aebersold, R. Electrophoresis 1995, 16, 1791-1814.
14. Figeys, D.; Ducret, A.; Yates, Y. R., III; Aebersold, R. Nat. Biotechnol. 1996, 14, 1579-1583.
15. Neubauer, G.; Gottschalk A.; Fabrizio, P.; Seraphin, B.; Luhrmann, R.; Mann, M. Proc. Natl. Acad. Sci. U.S.A. 1997, 94, 385-390.
16. Shevchenko, A.; Jensen, O. N.; Podtelejnikov, A. V.; Sagliocco, F.; Wilm, M.; Vorm, O.; Mortensen, P.; Shevchenko, A.; Boucherie, H.; Mann, M. Proc. Nat. Acad. Sci. U.S.A. 1996, 93, 14440-14445.
17. Hunt, D. F.; Yates, J. R., III; Shabanowitz, J.; Winston, S.; Hauer, C. R. Proc. Natt. Acad Sci U.S.A. 1986, 83, 17, 6233-6237.
18. McCormack, A. L.; Schieltz, D. M.; Goode, B.; Yang, S.; Barnes, G.; Drubin, D.; Yates, J. R., III Anal Chem. 1997, 69, 767-776.
19. Wilm, M.; Mann, M. Anal. Chem. 1996, 68, 1-8.
20. Kaufmann, R.; Spengler, B.; Lutzenkirchen, F. Rapid Commun. Mass Spectrom. 1993, 7, 902-910.
21. Griffin, P. R.; MacCoss, M. J.; Eng, J. K.; Blevins, R. A.; Aaronson, J. S.; Yates, J. R., III Rapid Commun. Mass Spectrom. 1995, 9, 1546-1551.
22. Patterson, S. D.; Thomas, D.; Bradshaw, R. A. Electrophoresis 1996, 17, 877-891.
23. O'Connell, K. L.; Stults, J. T. Electrophoresis 1997, 18, 349-359.
24. Larsson, T.; Norbeck, J.; Karlsson, H.; Karlsson, K. A.; Blomberg, A. Electrophoresis 1997, 18, 418-423.
25. Matsui, N. M.; Smith, D. M.; Clauser, K. R.; Fichmann, J.; Andrews, L. E.; Sullivan, C. M.; Burlingame, A. L.; Epstein, L. B. Electrophoresis 1997, 18, 409-417.
26. Qin, J.; Steenvoorden, R. J. J. M.; Chait, B. T. Anal. Chem. 1996, 68, 1784-1791.
27. Qin, J.; Chait, B. T. Anal. Chem. 1996, 68, 2102-2107.
28. Qin, J.; Chait, B. T. Anal. Chem. 1996, 68, 2108-2112.
29. Wilson, C. J.; Mann, M.; Imbalzano, A. N.; Schnitzler, G. R.; Kingston, R. E.; Young, R. A. Cell 1996, 84, 235-244.
30. Fenyö, D. http://chait-sgi.rockefeller.edu 1996. Fenyö, D.; Zhang, W.; Chait, B. T.; Beavis, R. C. Anal. Chem. 1996, 68, 721A-726A.
31. Fenyö, D. http://chait-sgi.rockefeller.edu 1996. Fenyö, D.; Zhang, W.; Chait, B. T.; Beavis, R. C. Anal. Chem. 1996, 68, 721A-726A.
32. Qin, J.; Chait, B. T. J. Am. Chem. Soc. 1995, 117, 5411-5412.
33. Qin, J. Ph.D. Thesis, Rockefeller University, 1996.
34. Roepstorff, P.; Fohlman, J. J. Biomed. Environ. Mass Spectrom. 1984, 11, 601.
35. Biemann, K. Appendix 5. Nomenclature for peptide fragment ions (positive ions). Methods Enzymol. 1990, 193, 886-887.
36. McCaldon, P.; Argos, P. Proteins 1988, 4, 99-122.
37. Seiki, M.; Hattori, S.; Hirayama, Y.; Yoshida, M. Proc. Natl. Acad. Sci. U.S.A. 1983, 80, 3618-3622.
38. Oroszlan, S.; Sarngadharan, M. G.; Copeland, T. D.; Kalyanaraman, V. S.; Gilden, R. V.; Gallo, R. C. Proc. Natl. Acad. Sci. U.S.A. 1982, 79, 1291-1294.
39. Copeland, T. D.; Oroszlan, S.; Kalyanaraman, V. S.; Sarngadharan, M. G.; Gallo, R. C. FEBS Lett. 1983, 162, 390-395.
40. Qin, J.; Chait, B. T. Anal. Chem. 1997, 69, 4002-4009.
41. Jiang, X.; Smith, J. B.; Abraham, E. C. J. Mass Spectrom. 1996, 31, 1309-1310.
42. Koleske, A. J.; Young, R. A. Trends Biochem. Sci. 1995, 20, 113-116.
43. Thompson, C. M.; Koleske, A. J.; Chao, D. M.; Young, R. A. Cell 1993, 73, 1361-1375.
44. Li, Y.; Bjorklund, S.; Jiang, Y. W.; Kim, Y. J.; Lane, W. S.; Stillman, D. J.; Kornberg, R. D. Proc. Natl. Acad. Sci. U.S.A 1995, 92, 10864-10868.
45. Jiang, Y. W.; Stillman, D. J. Genes Dev. 1996, 10, 604-619.
46. Keys, D. A.; Vu, L., Steffan, J. S.; Dodd, J. A.; Yamamoto, R. T.; Nogi, Y.; Nomura, M. Genes Dev. 1994, 8, 2349-62.