Cloning of a new human gene with short consensus repeats using the EST database

Immunogenetics

Volumn 46, Issue 2, 1997, Pages 99-103

  Nangaku, Masaomi ^a,c   Shankland, Stuart J ^a   Kurokawa, Kiyoshi ^b   Bomsztyk, Karol ^a   Johnson, Richard J ^a   Couser, William G ^a  

^a UNIVERSITY OF WASHINGTON SCHOOL OF MEDICINE   (United States)

^b TOKAI UNIVERSITY   (Japan)

^c UNIVERSITY OF TOKYO   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; CYSTEINE;

ARTICLE; COMPLEMENT SYSTEM; CONSENSUS SEQUENCE; DATA BASE; GENE SEQUENCE; HUMAN; HUMAN CELL; MOLECULAR CLONING; NORTHERN BLOTTING; OPEN READING FRAME; PRIORITY JOURNAL; PROTEIN STRUCTURE;

AMINO ACID SEQUENCE; BASE SEQUENCE; CLONING, MOLECULAR; COMPLEMENT INACTIVATOR PROTEINS; DATABASES, FACTUAL; GENES; GENOME, HUMAN; HUMANS; MOLECULAR SEQUENCE DATA; ORGAN SPECIFICITY; REPETITIVE SEQUENCES, NUCLEIC ACID;

EID: 0031007669     PISSN: 00937711     EISSN: None     Source Type: Journal    
DOI: 10.1007/s002510050247     Document Type: Article

References (55)

1. Adams, E. M., Brown, M. C., Nunge, M., Krych, M., and Atkinson, J. P. Contribution of the repeating domains of membrane cofactor protein (CD46) of the complement system to ligand binding and cofactor activity. J Immunol 147: 3005-3011, 1991
2. Adams, M. D., Dubnick, M. Kerlavage, A. R., Moreno, R., Kelley, J. M., Utterback, T. R., Nagle, J. W., Fields, C., and Venter, J. C. Sequence identification of 2375 human brain genes. Nature 355: 632-634, 1992
3. Adams, M. D., Kelley, J. M., Gocayne, J. D., Dubnick, M., Polymeropoulos, M. H., Xiao, H., Merril, C. R., Wu, A., Olde, B., Moreno, R. F., Kerlavage, A. R., McCombie, W. R., and Venter, J. C. Complementary DNA sequencing: expressed sequence tags and human genome project. Science 252: 1651-1656, 1991
4. Altschul, S. F., Gish, W., Miller, W., Myers, E. W., and Lipman, D. J. Basic local alignment search tool. J Mol Biol 215: 403-410, 1990
5. Asghar, S. S. Biology of disease. membrane regulators of complement activation and their aberrant expression in disease. Lab Invest 72: 254-271, 1995
6. Banfi, S., Borsani, G., Rossi, E., Bernard, L., Guffanti, A., Rubboli, F., Marchitiello, A., Giglio, S., Coluccia, E., Zollo, M., Zuffardi, O., and Ballabio, A. Identification and mapping of human cDNAs homologous to Drosophila mutant genes through EST database searching. Nat Genet 13: 167-173, 1996
7. Barlow, P. N., Baron, M., Norman, D. G., Day, A. J., Willis, A. C., Sim, R. B., and Campbell, I. D. Secondary structure of a complement control protein module by two-dimensional 1H NMR. Biochemistry 30: 997-1004, 1991
8. Barlow, P. N., Norman, D. G., Steinkasserer, A., Home, T. J., Pearce, J., Driscoll, P. C., Sim, R. B., and Campbell, I. D. Solution structure of the fifth repeat of factor H: a second example of the complement control protein module. Biochemistry 31: 3626-3634, 1992
9. Barlow, P. N., Steinkasserer, A., Norman, D. G., Kieffer, B., Wiles, A. P., Sim, R. B., and Campbell, I. D. Solution structure of a pair of complement modules by nuclear magnetic resonance. J Mol Biol 232: 268-284, 1993
10. Bevilacqua, M.P., Stengelin, S., Gimbrone Jr., M.A., and Sneed, B. Endothelial leukocyte adhesion molecule 1: an inducible receptor for neutrophils related to complement regulatory proteins and lectins. Science 243: 1160-1165, 1989
11. Bevilacqua, M. P. and Nelson, R. M. Selectins. J Clin Invest 91: 379-387, 1993
12. Boguski, M. S., Lowe, T. M. J., and Tolstoshev, C. M. dbHST - database for "expressed sequence tags". Nat Genet 4: 332-333, 1993
13. Boguski, M. S., Tolstoshev, C. M., and Bassett Jr. , D. E. Gene discovery in dbEST, Science 265: 1993-1994, 1994
14. Brodbeck, W. G., Liu, D., Sperry, J., Mold, C., and Medof, M. E. Localization of classical and alternative pathway regulatory activity within the decay-accelerating factor. J Immunol 156: 2528-2533, 1996
15. Coyne, K. E., Hall, S. E., Thompson, E. S., Arce, M. A., Kinoshita, T., Fujita, T., Anstee, D. J., Rosse, W., and Lublin, D. M. Mapping of epitopes. glyosylation sites, and complement regulatory domains in human decay accelerating factor. J Immunol 149: 2906-2913, 1992
16. Dianzani, U., and Malavasi, F. Lymphocyte adhesion to endothelium. Crit Rev Immunol 15: 167-200, 1995
17. Gordon, D. L., Kaufman, R. M., Blackmore, T. K., Kwong, J., and Lublin, D. M. Identification of complement regulatory domains in human factor H. J Immunol 155: 348-356, 1995
18. Graves, B. J., Crowther, R. L., Chandran, C., Rumherger, J. M., Li, S., Huang, K.-S., Presky, D. H., Familletti, P. C., Wolitzky, B. A., and Burns, D. K. Insight into E-selectin/ligand interaction from the crystal structure and mutagenesis of the lec/EGF domains. Nature 367: 532-538, 1994
19. Higgins, D. G., and Sharp, P. M. CLUSTAL: a package for performing multiple sequence alignment on a microcomputer. Gene 73: 237-244, 1988
20. Holers, V. M., Kinoshita, T., and Molina, H. The evolution of mouse and human complement C3-hinding proteins: divergence of form but conservation of function, Immunol Today 13: 231-236, 1992
21. Hourcade, D., Holers, V. M., and Atkinson, J. P. The regulators of complement activation (RCA) gene cluster. Adv Immunol 45: 381-416, 1989
22. Hourcade, D. E., Wagner, L. M., and Ogleshy, T. J. Analysis of the short consensus repeats of human complement factor B by site-directed mutagenesis. J Biol Chem 270: 19716-19722, 1995
23. Iwata, K., Seya, T., Yanagi, Y., Pesando, J. M., Johnson, P. M., Okabe, M., Ueda, S., Ariga, H., and Nagasawa, S. Diversity of sites for measles virus binding and for inactivation of complement C3b and C4b on membrane cofactor protein CD46. J Biol Chem 270: 15148-15152, 1995
24. Johnston, G.I., Cook, R.G., and McEver, R.P. Cloning of GMP-140, a granule membrane protein of platelets and endothelium: sequence similarity to proteins involved in cell adhesion and inflammation. Cell 56: 1033-1044, 1989
25. Jutila, M. A., Watts, G., Walcheck, B., and Kansas, G. S. Characterization of a functionally important and evolutionary well-conserved epitope mapped to the short consensus repeats of E-selectin and L-selectin. J Exp Med 175: 1565-1573, 1992
26. Kalli, K. R., Hsu, P. H., Bartow, T. J., Ahearn, J. M., Matsumoto, A. K., Klickstein, L. B., and Fearon, D. T. Mapping of the C3b-binding site of CR1 and construction of a (CR1)2-F(ab′)2 chimeric complement inhibitor. J Exp Med 174: 1451-1460, 1991
27. Klickstein, L. B., Bartow, T. J., Miletic, V., Rabson, L. D., Smith, J. A., and Fearon, D. T. Identification of distinct C3b and C4b recognition sites in the human C3b/C4b receptor (CR1. CD35) by deletion mutagenesis. J Exp Med 168: 1699-1717, 1988
28. Kozak, M. The scanning model for translation: an update. J Cell Biol 108: 229-241, 1989
29. Kozak, M. Structural features in eukaryotic mRNAs that modulate the initiation of translation. J Biol Chem 266: 19867-19870, 1991
30. Krych, M., Clemenza, L., Howdeshell, D., Hauhart, R., Hourcade, D., and Atkinson, J. P. Analysis of the functional domains of complement receptor type I (C3b/C4b receptor: CD35) by substitution mutagenesis. J Biol Chem 269: 13273-13278, 1994
31. Krych, M., Hourcade, D., and Atkinson, J. P. Sites within the complement C3b/C4b receptor important for the specificity of ligand binding. Proc Natl Acad Sci USA 88: 4353-4357, 1991
32. Kuhn, S., Skerka, C., and Zipfel, P. F. Mapping of the complement regulatory domains in the human factor H-like protein 1 and in factor H. J Immunol 155: 5663-5670, 1995
33. Lasky, L. A. Selectin-carbohydrate interactions and the initiation of the inflammatory response. Annu Rev Biochem 64: 113-139, 1995
34. Lasky, L. A. Selectins: interpreters of cell-specific carbohydrate information during inflammation. Science 258: 964-969, 1992
35. Lesage, F., Guillemare, E., Fink, M., Duprat, F., Lazdunski, M., Romey, G., and Barhanin, J. TWIK-1. a ubiquitous human weakly inward rectifying K+ channel with a novel structure. EMBO J 15: 1004-1011, 1996
36. Liszewski, M. K., Post, T. W., and Atkinson, J. P. Membrane cofactor protein (MCP or CD46): newest member of the regulators of complement activation gene cluster. Annu Rev Immunol 9: 431-455, 1991
37. Makrides, S. C., Scesney, S. M., Ford, P. J., Evans, K. S., Carson, G. R., and Marsh, J., H.C. Cell surface expression of the C3b/C4b receptor (CR1) protects Chinese hamster ovary cells from lysis by human complement. J Biol Chem 267: 24754-24761, 1992
38. Mohana-Rao, J. K. and Argos, P. A conformational preference parameter to predict helices in integral membrane proteins. Biochim Biophys Acta 869: 197-214, 1986
39. Morgan, B. P. Physiology and pathophysiology of complement: progress and trends. Crit Rev Clin Lab Sci 32: 265-298, 1995
40. Morgan, B. P. and Meri, S. Membrane proteins that protect against complement lysis. Spring Semin Immunopathol 15: 369-396, 1994
41. Nangaku, M., Sato-Yoshitake, R., Okada, Y., Noda, Y., Takemura, R., Yamazaki, H., and Hirokawa, N. KIF1B. a novel microtubule plus end-directed monomeric motor protein for transport of mitochondria. Cell 79: 1209-1220, 1994
42. Norman, D. G., Barlow, P. N., Baron, M., Day, A. J., Sim, R. B., and Campbell, I. D. Three-dimensional structure of a complement control protein module in solution. J Mol Biol 219: 717-725, 1991
43. Ogata, R. T., Mathias, P., Bradt, B. M., and Cooper, N. R. Murine C4b-binding protein. Mapping of the ligand binding site and the N-terminus of the pre-protein. J Immunol 150: 2273-2280, 1993
44. Pan, J., Nakanishi, K., Yutsudo, M., Inoue, H., Li, Q., Oka, K., Yoshioka, N., and Hakura, A. Isolation of a novel gene downregulated by v-src. FEBS Lett 383: 21-25, 1996
45. Patel, K. D., Nollert, M. U., and McEver, R. P. P-selectin must extend a sufficient length from the plasma membrane to mediate rolling of neutrophils. J Cell Biol 131: 1893-1902, 1995
46. Paul, M. S., Aegerter, M., O'Brien, S. E., Kurtz, C. B., and Weis, J. H. The murine complement receptor gene family. Analysis of mCRY gene products and their homology to human CR1. J Immunol 142: 582-589, 1989
47. Perkins, S. J., Nealis, A. S., and Sim, R. B. Oligomeric structure of human complement factor H by x-ray and neutron solution scattering. Biochemistry 30: 2847-2857, 1991
48. Reid, K. B. M. and Day, A. J. Structure-function relationships of the complement components. Immunol Today 10: 177-180, 1989
49. Rosen, S. D., and Bertozzi, C. R. The selectins and their ligands. Curr Opin Cell Biol 6: 663-673, 1994
50. Sanger, F., Nicklen, S., and Coulson, A. R. DNA sequencing with chain terminating inhibitors. Proc Natl Acad Sci USA 74: 5463-5467. 1977
51. Soames, C. J., Day, A. J., and Sim, R. B. Prediction from sequence comparisons of residues of factor H involved in the interaction with complement component C3b. Biochem J 315: 523-531, 1996
52. Takano, T. and Brady, H. R. The endothelium in glomerular inflammation. Curr Opin Nephrol Hypertens 4: 277-286, 1995
53. Tedder, T. F. Isaacs, C. M., Ernst, T. J., Demetri, G. D., Adler, D. A., and Disteche, C. M. Isolation and chromosomal localization of cDNAs encoding a novel human lymphocyte cell surface molecule, LAM-1. Homology with the mouse lymphocyte homing receptor and other human adhesion proteins. J Exp Med 170: 123-133, 1989
54. Von Heijne, G. A new method for predicting signal sequence cleavage sites. Nucleic Acid Res 14: 4683-4690, 1986
55. Watson, S. R., Imai, Y., Fennie, C., Geoffrey, J., Singer, M., Rosen, S. D., and Lasky, L. A. The complement binding-like domains of the murine homing receptor facilitate lectin activity. J Cell Biol 115: 235-243, 1991