Amino acid sequence differences cannot fully explain interspecific variation in thermal sensitivities of Gobiid fish A4-lactate dehydrogenases (A4-LDHS)

Journal of Experimental Biology

Volumn 200, Issue 13, 1997, Pages 1839-1850

  Fields, Peter A ^a,b   Somero, George N ^b  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b STANFORD UNIVERSITY   (United States)

Author keywords

Adaptation; Coryphopterus personatus; Coryphoterus nicholsi; Gillichthys mirabilis; Gillichthys seta; Gorby; Lactate dehydrogenase; Temperature

Indexed keywords

EID: 0030857260     PISSN: 00220949     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (57)

1. 4 apo-lactate dehydrogenase. J. molec. Biol. 198, 445-467.
2. BARLOW, G. W. (1961). Gobies of the genus Gillichthys with comments on the sensory canals as a taxonomic tool. Copeia 1961, 423-437.
3. BROOKS, S. P. J. AND SUELTER, C. H. (1986). Estimating enzyme kinetic parameters: A computer program for linear regression and nonparametric analysis. Int. J. Bio-med. Comput. 19, 89-99.
4. +]. Science 268, 880-883.
5. CHOMCZYNSKI, P. AND SACCHI, N. (1987). Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Analyt. Biochem. 162, 156-159.
6. COATES, A. G., JACKSON, J. B. C., COLLINS, L. S., CRONIN, T. M., DOWSETT, H. J., BYBEL, L. M., JUNG, P. AND OBANDO, J. A. (1993). Closure of the isthmus of Panama: The near-shore marine record of Costa Rica and western Panama. Geol. Soc. Am. Bull. 104, 814-828.
7. DAHLHOFF, E. AND SOMERO, G. N. (1993). Kinetic and structural adaptations of cytoplasmic malate dehydrogenases of Eastern Pacific abalone (genus Haliotis) from different thermal habitats: biochemical correlates of biogeographical patternins. J. exp. Biol. 185, 137-150.
8. EDMONDS, C. G. AND SMITH, R. D. (1990). Electrospray ionization mass spectrometry. In Methods in Enzymology, vol. 193, Mass Spectrometry (ed. J. A. McCloskey), pp. 412-431. New York: Academic Press.
9. EDWARDS, J. B. D. M., DELORT, J. AND MALLET, J. (1991). Oligodeoxyribonucleotide ligation to single-stranded cDNAs - a new tool for cloning 5′-ends of messenger RNAs and for constructing cDNA libraries by in vitro amplification. Nucleic Acids Res. 19, 5227-5232.
10. FIELDS, P. A., GRAHAM, J. B., ROSENBLATT, R. H. AND SOMERO, G. N. (1993). Effects of expected global climate change on marine faunas. Trends Ecol. Evol. 8, 361-365.
11. FROHMAN, M. A., DUSH, M. K. AND MARTIN, G. R. (1988). Rapid production of full-length cDNA's from rare transcripts: Amplification using a single gene-specific oligonucleotide primer. Proc. natn. Acad. Sci. U.S.A. 85, 8998-9002.
12. GOULD, S. J. (1977). Ontogeny and Phytogeny. Cambridge: Belknap Press.
13. GOULD, S. J. (1988). The uses of heterochrony. In Heterochrony in Evolution (ed. M. L. McKinney), pp. 1-13. New York: Plenum Press.
14. GRAVES, J. E. AND SOMERO, G. N. (1982). Electrophoretic and functional enzymic evolution in four species of eastern Pacific barracudas from different thermal environments. Evolution 36, 97-106.
15. HARTL, F. U. (1996). Molecular chaperones in cellular protein folding. Nature 381, 571-580.
16. HOCHACHKA, P. W. AND SOMERO, G. N. (1984). Biochemical Adaptation. Princeton: Princeton University Press.
17. HOLLAND, L. Z., MCFALL-NGAI, M. AND SOMERO, G. (1997). Evolution of lactate dehydrogenase-A homologs of barracuda fishes (Genus Sphyraena) from different thermal environments: Differences in kinetic properties and thermal stability are due to amino acid substitutions outside the active site. Biochemistry 36, 3207-3215.
18. HORNES, E. AND KORSNES, L. (1990). Magnetic DNA hybridization properties of oligonucleotide probes attached to superparamagnetic beads and their use in the isolation of poly(A) mRNA from eukaryotic cells. Genet. analyt. Tech. Appl. 7, 145-150.
19. HUBBS, C. L. (1948). Changes in the fish fauna of Western North America correlated with changes in ocean temperature. J. mar. Res. 7, 459-482.
20. IMANAKA, T., SHIBAZAKI, M. AND TAKAGI, M. (1986). A new way of enhancing the thermostability of proteases. Nature 324, 695-697.
21. JACOBSON, K. B., MURPHY, J. B. AND HARTMAN, F. C. (1970). Isoenzymes of Drosophila alcohol dehydrogenase. J. biol. Chem. 245, 1075-1083.
22. JAENICKE, R. (1991). Protein stability and molecular adaptation to extreme conditions. Eur. J. Biochem. 202, 715-728.
23. JOHNSTON, I. A. AND WALESBY, N. J. (1977). Molecular mechanisms of temperature adaptation in fish myofibrillar adenosine triphosphatases. J. comp. Physiol. 119, 195-206.
24. KING, L. AND WEBER, G. (1986a). Conformational drift of dissociated lactate dehydrogenases. Biochemistry 25, 3632-3637.
25. KING, L. AND WEBER, G. (1986b). Conformational drift and cryoinactivation of lactate dehydrogenase. Biochemistry 25, 3637-3640.
26. KNOWLTON, N., WEIGT, L. A., SOLORZANO, L. A., MILLS, D. K. AND BERMINGHAM, E. (1993). Divergence in proteins, mitochondrial DNA and reproductive compatibility across the isthmus of Panama. Science 260, 1629-1632.
27. LEVI, A. S. AND KAPLAN, N. O. (1971). Physical and chemical properties of reversibly inactivated lactate dehydrogenases. J. biol. Chem. 246, 6409-6417.
28. LINDQUIST, S. AND KIM, G. (1996). Heat-shock protein 104 expression is sufficient for thermotolerance in yeast. Proc. natn. Acad. Sci. U.S.A. 93, 5301-5306.
29. MARANGOS, P. J. AND CONSTANTINIDES, S. M. (1974). Multiple forms of flounder muscle glyceraldehyde-3-phosphate dehydrogenase. J. biol. Chem. 249, 951-958.
30. MATTHEWS, B. W., NICHOLSON, H. AND BECKTEL, W. J. (1987). Enhanced protein thermostability from site-directed mutations that decrease the entropy of unfolding. Proc. natn. Acad. Sci. U.S.A. 84, 6663-6667.
31. MCFALL-NGAI, M. AND HORWITZ, J. (1990). A comparative study of the thermal stability of the vertebrate eye lens: Antarctic fish to the desert iguana. Exp. Eye Res. 50, 703-709.
32. MILLER, D. J. AND LEA, R. N. (1972). Guide to the coastal marine fishes of California. Cal. Fish Bull. 157.
33. MULLIS, K. B. AND FALOONA, F. A. (1987). Specific synthesis of DNA in vitro via a polymerase-catalyzed chain reaction. Methods Enzymol. 155, 335-350.
34. NICKERSON, K. W. (1973). Biological functions of multistable proteins. J. theor. Biol. 40, 507-515.
35. OZERNYUK, O. D., KLYACHKO, O. S. AND POLOSUKHINA, E. S. (1994). Acclimation temperature affects the functional and structural properties of lactate dehydrogenase from fish (Misgurnus fossilis) skeletal muscles. Comp. Biochem. Physiol. 107B, 141-145.
36. PAN, K.-M., BALDWIN, M., NGUYEN, J., GASSET, M., SERBAN, A., GROTH, D., MEHLHORN, I., HUANG, Z. AND PRUSINER, S. B. (1993). Conversion of α-helices into β-sheets features in the formation of the scrapie prion proteins. Proc. natn. Acad. Sci. U.S.A. 90, 10962-10966.
37. PATINO, M. M., LIU, J.-J., GLOVER, J. R. AND LINDQUIST, S. (1996). Support for the prion hypothesis for inheritance of a phenotypic trait in yeast. Science 273, 622-626.
38. 4) allozymes of Fundulus heteroclitus. J. biol. Chem. 259, 1309-1318.
39. POWERS, D. A., SMITH, M., GONZALEZ-VILLASENOR, I., DIMICHELLE, L., CRAWFORD, D., BERNARDI, G. AND LAUERMAN, T. (1993). A multidisciplinary approach to the selectionist/neutralist controversy using the model teleost, Fundulus heteroclitus. In Oxford Surveys in Evolutionary Biology, vol. 9 (ed. D. Futuyama and J. Antonovics), pp. 43-107. Oxford: Oxford University Press.
40. PRUSINER, S. B. (1991). Molecular biology of prion diseases. Science 252, 1515-1522.
41. PRUSINER, S. B. (1994). Biology and genetics of prion diseases. A. Rev. Microbiol. 48, 655-686.
42. SMITH, L. M., KAISER, R. J., SANDERS, J. Z. AND HOOD, L. E. (1987a). The synthesis and use of fluorescent oligonucleotides in DNA sequence analysis. Methods Enzymol. 155, 260-301.
43. SMITH, L. M., SANDERS, J. Z., KAISER, R. J., HUGHES, P., DODD, C., CONNELL, C. R., HEINER, C., KENT, S. B. H. AND HOOD, L. E. (1987b). Fluorescence detection in automated DNA sequence analysis. Nature 321, 674-679.
44. SOMERO, G. N. (1969). Pyruvate kinase variants of the Alaskan kingcrab. Biochem. J. 114, 237-241.
45. SOMERO, G. N. (1981). pH-temperature interactions on proteins: principles of optimal pH and buffer system design. Mar. Biol. Lett. 2, 163-178.
46. SOMERO, G. N. (1995). Proteins and temperature. A. Rev. Physiol. 57, 43-68.
47. SUSOR, W. A. AND RUTTER, W. J. (1968). Some distinctive properties of pyruvate kinase purified from rat liver. Biochem. biophys. Res. Commun. 30, 14-20.
48. TELLING, G. C., PARCHI, P., DEARMOND, S. J., CORTELLI, P., MONTAGNA, P., GABIZON, R., MASTRIANNI, J., LUGARESI, E., GAMBETTI, P. AND PRUSINER, S. B. (1996). Evidence for the conformation of the pathologic isoform of the prion protein enciphering and propagating prion diversity. Science 274, 2079-2082.
49. +] in the yeast Saccharomyces cerevisiae. Genetics 137, 671-676.
50. TESSIER, D. C., BROUSSEAU, R. AND VERNET, T. (1986). Ligation of single-stranded oligodeoxyribonucleotides by T4 RNA ligase. Analyt. Biochem. 158, 171-178.
51. THOMSON, D. A., FINDLEY, L. T. AND KERSTITCH, A. N. (1979). Reef Fishes of the Sea of Cotiez. New York: John Wiley and Sons.
52. 10 values of the laclate dehydrogenase reaction. Can. J. Zool. 60, 1293-1299.
53. WILKINSON, G. N. (1961). Statistical estimations in enzyme kinetics. Biochem. J. 80, 323-332.
54. XUE, Q. AND YEUNG, E. S. (1995). Differences in the chemical reactivity of individual molecules of an enzyme. Nature 373, 681-683.
55. 4-lactate dehydrogenase in temperature adaptation. Biochim. biophys. Acta 924, 483-491.
56. m values of vertebrate lactate dehydrogenases. J. comp. Physiol. 125B, 129-134.
57. ZANEVELD, J. S. (1983). Caribbean Fish Life: Index to the Local and Scientific Names of the Marine Fishes and Fishlike Invertebrates of the Caribbean Area (Tropical Western Central Atlantic Ocean). Leiden: E. J. Brill.